_site.yml

name: "Shortcourse on multiplex imaging data"
output_dir: "."
navbar:
  title: "Analysis of multiplex single-cell imaging data in R"
  left:
    - text: "Home"
      href: index.html
    - text: "Short Course"
      menu:
        - text: "Data Download"
          href: MI_Data.html
        - text: "Background on multiplex single-cell imaging"
          href: MI_intro.html
        - text: "VectraPolarisData package"
          href: MI_VectraPolarisData.html
        - text: "Segmentation, normalization, and phenotyping"
          href: MI_normalization.html
        - text: "Extracting spatial summary statistics"
          href: MI_spatialAnalysis.html
        - text: "Modeling patient-level outcomes"
          href: MI_fda.html
  right:
    - text: "About"
      href: about.html
    - icon: fa-github fa-lg
      href: https://github.com/julia-wrobel/MI_tutorial
output:
  html_document:
    theme: flatly