From ceab48617b95ff527776c045d4f1ee3c07018132 Mon Sep 17 00:00:00 2001 From: Jeffrey Shi Date: Mon, 10 Jun 2019 14:43:58 -0400 Subject: [PATCH] Clone --- .DS_Store | Bin 0 -> 6148 bytes Mock.Rcheck/00_pkg_src/Mock/DESCRIPTION | 13 +++++ Mock.Rcheck/00_pkg_src/Mock/NAMESPACE | 2 + Mock.Rcheck/00_pkg_src/Mock/R/hello.R | 6 +++ Mock.Rcheck/00_pkg_src/Mock/europe.csv | 62 +++++++++++++++++++++++ Mock.Rcheck/00_pkg_src/Mock/man/hello.Rd | 12 +++++ Mock.Rcheck/00check.log | 16 ++++++ Mock/.DS_Store | Bin 0 -> 6148 bytes Mock/.Rbuildignore | 2 + Mock/.gitignore | 4 ++ Mock/DESCRIPTION | 13 +++++ Mock/Mock.Rproj | 20 ++++++++ Mock/NAMESPACE | 2 + Mock/R/hello.R | 3 ++ Mock/man/hello.Rd | 12 +++++ Mock_0.1.0.tar.gz | Bin 0 -> 2631 bytes 16 files changed, 167 insertions(+) create mode 100644 .DS_Store create mode 100644 Mock.Rcheck/00_pkg_src/Mock/DESCRIPTION create mode 100644 Mock.Rcheck/00_pkg_src/Mock/NAMESPACE create mode 100644 Mock.Rcheck/00_pkg_src/Mock/R/hello.R create mode 100644 Mock.Rcheck/00_pkg_src/Mock/europe.csv create mode 100644 Mock.Rcheck/00_pkg_src/Mock/man/hello.Rd create mode 100644 Mock.Rcheck/00check.log create mode 100644 Mock/.DS_Store create mode 100644 Mock/.Rbuildignore create mode 100644 Mock/.gitignore create mode 100644 Mock/DESCRIPTION create mode 100644 Mock/Mock.Rproj create mode 100644 Mock/NAMESPACE create mode 100644 Mock/R/hello.R create mode 100644 Mock/man/hello.Rd create mode 100644 Mock_0.1.0.tar.gz diff --git a/.DS_Store b/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..90d452b9123dfcc557a4f386a5d5bb4f17f66807 GIT binary patch literal 6148 zcmeHKJ5R$f5WXuJin?@yj$T-iD*iyI!UhW+SWzEpD;m-PcKO;%Z75|k1*}H-+ zX+t}D$@lN}>eyB{RkheR3+NCN&z~ROu5~u~Y{nkx3!ymk}`H~;$v}0a51I|ES7|>gohNHeL$k*WvI0L`NfZPuO zMX)rCis|Y=l~Mp;0d*3zC6|zxU|1SPMOYxLp+F5~OEFl(p%3O)8b(D8C${8+ZDh6# zh12NhKO}eJQqgN?z!}IHIML6sy#F`d`F|edU(SFt&?^SGsOHrSOR~4MwK#ce1Ii +Maintainer: Jeffrey Shi +Description: Description +License: LGPL-2 +Encoding: UTF-8 +LazyData: true +Imports: GenomeInfoDb +NeedsCompilation: no +Packaged: 2019-06-10 18:00:12 UTC; junpingshi diff --git a/Mock.Rcheck/00_pkg_src/Mock/NAMESPACE b/Mock.Rcheck/00_pkg_src/Mock/NAMESPACE new file mode 100644 index 0000000..9cd5ac0 --- /dev/null +++ b/Mock.Rcheck/00_pkg_src/Mock/NAMESPACE @@ -0,0 +1,2 @@ +export('myFun', 'myFun2') +import('GenomeInfoDb') diff --git a/Mock.Rcheck/00_pkg_src/Mock/R/hello.R b/Mock.Rcheck/00_pkg_src/Mock/R/hello.R new file mode 100644 index 0000000..88c7d9c --- /dev/null +++ b/Mock.Rcheck/00_pkg_src/Mock/R/hello.R @@ -0,0 +1,6 @@ +myFun <- function(arg1){ + 5*arg1+1 +} +myFun2 <- function(){ + names(genomeStyles()) +} diff --git a/Mock.Rcheck/00_pkg_src/Mock/europe.csv b/Mock.Rcheck/00_pkg_src/Mock/europe.csv new file mode 100644 index 0000000..7c79517 --- /dev/null +++ b/Mock.Rcheck/00_pkg_src/Mock/europe.csv @@ -0,0 +1,62 @@ +SNo,Country,"July 1, 2013",% of,Rank,Average,Average,Estimated,Alternative,Date +,(or dependent territory),projection,pop.,,relative,absolute,doubling,figure, +,,,,,annual,annual,time,, +,,,,,growth,growth,(Years),, +,,,,,(%),,,, +1,Russia,"14,34,55,000",19.44,1,0.15,"2,21,000",450,"14,34,00,000","April 1, 2013" +2,Germany,"8,06,40,000",10.93,2,0.24,"1,96,000",285,"8,04,93,000","September 30, 2012" +3,France,"6,66,16,416",9.03,3,0.49,"3,09,000",143,"6,58,34,000","January 1, 2014" +4,United Kingdom,"6,42,31,000",8.71,4,0.73,"4,65,000",95,"6,31,81,775","March 27, 2011" +5,Italy,"5,97,89,000",8.1,5,0.35,"2,06,000",201,"5,97,04,082","January 31, 2013" +6,Spain,"4,69,58,000",6.36,6,-0.43,"-2,05,000",-,"4,70,59,533","January 1, 2013" +7,Ukraine,"4,54,61,000",6.16,7,-0.52,"-2,36,000",-,"4,54,80,315","June 1, 2013" +8,Poland,"3,85,48,000",5.22,8,0.08,"29,000",921,"3,85,33,299","December 31, 2012" +9,Romania,"1,98,58,000",2.69,9,-0.77,"-1,55,000",-,"2,01,21,641","October 20, 2011" +10,Netherlands,"1,67,95,000",2.28,10,0.33,"55,000",211,"1,68,14,300","January 18, 2014" +11,Belgium,"1,11,62,000",1.51,11,0.66,"73,000",106,"1,11,56,136","June 1, 2013" +12,Greece,"1,07,58,000",1.46,12,-0.13,"-14,000",-,"1,08,15,197","May 24, 2011" +13,Portugal,"1,06,09,000",1.44,13,0.19,"20,000",367,"1,05,62,178","March 21, 2011" +14,Czech Republic,"1,05,19,000",1.43,14,0.23,"24,000",303,"1,05,12,800","March 31, 2013" +15,Hungary,"98,94,000",1.34,15,-0.25,"-25,000",-,"99,06,000","January 1, 2013" +16,Sweden,"95,95,000",1.3,16,0.76,"72,000",92,"95,88,569","May 31, 2013" +17,Belarus,"94,60,000",1.28,17,-0.04,"-4,000",-,"94,59,800","July 1, 2013" +18,Austria,"84,77,000",1.15,18,0.61,"51,000",115,"84,64,554","April 1, 2013" +19,Switzerland,"80,75,000",1.09,19,0.82,"66,000",84,"80,58,100","March 31, 2013" +20,Bulgaria,"72,61,000",0.98,20,-0.59,"-43,000",-,"72,82,041","December 31, 2012" +21,Serbia,"72,03,000",0.98,21,-0.35,"-25,000",-,"72,41,295","January 1, 2012" +22,Denmark,"56,12,000",0.76,22,0.45,"25,000",155,"56,05,836","April 1, 2013" +23,Finland,"54,36,000",0.74,23,0.44,"24,000",157,"54,34,357","May 31, 2013" +24,Slovakia,"54,13,000",0.73,24,0.15,"8,000",469,"54,10,728","March 31, 2013" +25,Norway,"50,77,000",0.69,25,1.03,"52,000",67,"50,63,709","March 31, 2013" +26,Ireland,"46,62,000",0.63,26,1.35,"62,000",52,"45,85,400",Apr-12 +27,Croatia,"42,58,000",0.58,27,-0.35,"-15,000",-,"42,90,612","March 31, 2011" +28,Bosnia and Herzegovina,"38,47,000",0.52,28,0.08,"3,000",888,"38,39,737","June 30, 2011" +29,Moldova,"34,86,000",0.47,29,-1.39,"-49,000",-,"35,59,500","January 1, 2012" +30,Lithuania,"29,56,000",0.4,30,-1.3,"-39,000",-,"29,55,986","July 1, 2013" +31,Albania,"27,83,000",0.38,31,-0.78,"-22,000",-,"28,21,977","October 1, 2011" +32,Macedonia,"20,66,000",0.28,32,0.19,"4,000",358,"20,59,794","December 31, 2011" +33,Slovenia,"20,62,000",0.28,33,0.24,"5,000",286,"20,61,877","January 18, 2014" +34,Latvia,"20,11,000",0.27,34,-1.23,"-25,000",-,"20,13,400","June 1, 2013" +35,Kosovo,"18,26,000",0.25,35,1.16,"21,000",60,"18,15,606","December 31, 2012" +36,Estonia,"12,83,000",0.17,36,-0.62,"-8,000",-,"12,86,540","January 1, 2013" +37,Montenegro,"6,20,000",0.08,37,0,0,-,"6,20,029","April 1, 2011" +38,Luxembourg,"5,42,000",0.07,38,1.88,"10,000",37,"5,37,000","December 31, 2012" +39,Malta,"4,19,000",0.06,39,0.48,"2,000",145,"4,16,055","November 20, 2011" +40,Iceland,"3,24,000",0.04,40,1.25,"4,000",56,"3,23,810","July 1, 2013" +41,Jersey (UK),"1,00,000",0.01,41,1.01,"1,000",69,"97,857","March 27, 2011" +42,Isle of Man (UK),"87,000",0.01,42,1.16,"1,000",60,"84,497","March 27, 2011" +43,Andorra,"75,000",0.01,43,-1.32,"-1,000",-,"76,246",2012 +44,Guernsey (UK),"63,000",0.01,44,0,0,-,"62,431","March 31, 2010" +45,Faroe Islands (Denmark),"48,000",0.01,45,0,0,-,"48,244","April 1, 2013" +46,Liechtenstein,"37,000",0.01,46,0,0,-,"36,842","December 31, 2012" +47,Monaco,"36,000",0,47,0,0,-,"36,136","December 31, 2012" +48,San Marino,"32,000",0,48,0,0,-,"32,382","May 31, 2013" +49,Gibraltar (UK),"30,000",0,49,0,0,-,"29,752",2011 +50,Aland Islands (Finland),"29,000",0,50,3.57,"1,000",20,"28,502","December 31, 2012" +51,Svalbard and Jan Mayen (Norway),"3,000",0,51,0,0,-,"2,655","September 1, 2012" +52,Vatican City,800,0,52,0,0,-,800,2012 +,Total,"73,77,91,800",100,,0.16,"11,44,000",447,, +,,,,,,,,, +For other more formats kindly visit www.downloadexcelfiles.com,,,,,,,,, +,,,,,,,,, +Original source : en.wikipedia.org/wiki/List_of_European_countries_by_population,,,,,,,,, diff --git a/Mock.Rcheck/00_pkg_src/Mock/man/hello.Rd b/Mock.Rcheck/00_pkg_src/Mock/man/hello.Rd new file mode 100644 index 0000000..2e77eb9 --- /dev/null +++ b/Mock.Rcheck/00_pkg_src/Mock/man/hello.Rd @@ -0,0 +1,12 @@ +\name{myFun} +\alias{myFun} +\title{myFunction} +\usage{ +myFun() +} +\description{ +Prints +} +\examples{ +myFun(10) +} diff --git a/Mock.Rcheck/00check.log b/Mock.Rcheck/00check.log new file mode 100644 index 0000000..cb8d69b --- /dev/null +++ b/Mock.Rcheck/00check.log @@ -0,0 +1,16 @@ +* using log directory ‘/Users/junpingshi/Documents/Summer19/Mock.Rcheck’ +* using R version 3.5.1 (2018-07-02) +* using platform: x86_64-apple-darwin15.6.0 (64-bit) +* using session charset: UTF-8 +* checking for file ‘Mock/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘Mock’ version ‘0.1.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘GenomeInfoDb’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR diff --git a/Mock/.DS_Store b/Mock/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..8a2efa148cb6e433892a011598a95975bc3fb558 GIT binary patch literal 6148 zcmeHKOHKko5UmCl7#6ZH#$}(tgd2=xT)7e!Ch9@~gBXS(DEm2v2hf9fGhcO;GCh3U z86#Cm_v@)oSM{4uPZN>rE=L`rHW4+^7;6XUHVE6ftw~Ka9PD_G>A2G$=GlDB(-eP| z0ls$)I;Am9=q0{?7t69O%hPl)%?HpmuV3G9Mpqwav3<1DK7TAd8+ckEE#&RdoEDVR z6UIw=rUzQYRU95~_bk^0uUoBY%e+~>s_hw_*~(I>=V&4vXicipjK<{|~OcV=2Xdw0@5NNQ@82D8NJ^`^3aoqp_ literal 0 HcmV?d00001 diff --git a/Mock/.Rbuildignore b/Mock/.Rbuildignore new file mode 100644 index 0000000..91114bf --- /dev/null +++ b/Mock/.Rbuildignore @@ -0,0 +1,2 @@ +^.*\.Rproj$ +^\.Rproj\.user$ diff --git a/Mock/.gitignore b/Mock/.gitignore new file mode 100644 index 0000000..5b6a065 --- /dev/null +++ b/Mock/.gitignore @@ -0,0 +1,4 @@ +.Rproj.user +.Rhistory +.RData +.Ruserdata diff --git a/Mock/DESCRIPTION b/Mock/DESCRIPTION new file mode 100644 index 0000000..bc2bb84 --- /dev/null +++ b/Mock/DESCRIPTION @@ -0,0 +1,13 @@ +Package: Mock +Type: Package +Title: Mock R package +Version: 0.1.0 +Author: Jeffrey Shi +Maintainer: Jeffrey Shi +Description: Description +License: LGPL-2 +Encoding: UTF-8 +LazyData: true +Suggests: knitr +VignetteBuilder: knitr + diff --git a/Mock/Mock.Rproj b/Mock/Mock.Rproj new file mode 100644 index 0000000..497f8bf --- /dev/null +++ b/Mock/Mock.Rproj @@ -0,0 +1,20 @@ +Version: 1.0 + +RestoreWorkspace: Default +SaveWorkspace: Default +AlwaysSaveHistory: Default + +EnableCodeIndexing: Yes +UseSpacesForTab: Yes +NumSpacesForTab: 2 +Encoding: UTF-8 + +RnwWeave: Sweave +LaTeX: pdfLaTeX + +AutoAppendNewline: Yes +StripTrailingWhitespace: Yes + +BuildType: Package +PackageUseDevtools: Yes +PackageInstallArgs: --no-multiarch --with-keep.source diff --git a/Mock/NAMESPACE b/Mock/NAMESPACE new file mode 100644 index 0000000..16633e7 --- /dev/null +++ b/Mock/NAMESPACE @@ -0,0 +1,2 @@ +export('myFun') + diff --git a/Mock/R/hello.R b/Mock/R/hello.R new file mode 100644 index 0000000..8ba3cf9 --- /dev/null +++ b/Mock/R/hello.R @@ -0,0 +1,3 @@ +myFun <- function(arg1){ + 5*arg1+1 +} diff --git a/Mock/man/hello.Rd b/Mock/man/hello.Rd new file mode 100644 index 0000000..2e77eb9 --- /dev/null +++ b/Mock/man/hello.Rd @@ -0,0 +1,12 @@ +\name{myFun} +\alias{myFun} +\title{myFunction} +\usage{ +myFun() +} +\description{ +Prints +} +\examples{ +myFun(10) +} diff --git a/Mock_0.1.0.tar.gz b/Mock_0.1.0.tar.gz new file mode 100644 index 0000000000000000000000000000000000000000..fb9a357ef50db9e6c6962c70a6e200355f2b6f6e GIT binary patch literal 2631 zcmV-N3b^$jiwFP!000001MOOEPuofs=5wU}2P@Lmh26pR%y|65Uagh_?S%rZNPDG~ zDpe*Kf{SBEV;h=Q_rLFR#xDtwYIi@B?p7JKa_l+tWX?Iyd6}5AVtn)b@Mv^!as2k( z@tgCl?=U=!!1wJn43xckqPeHxhhmFMKMWODLg6`=Dh#$9Z|ez0T~>*~RzB7FJk6)& zb-G>-VpmsNKiznnjBk>u-gC}Cgu%PT93R_fgLi3_wKL9zGjE^%p-q_<`JUss-1P?g zb#+~sJ?BJUT^YS_M%StH+ow-ue0lYc+tf_cJWX6ZssBDWOVYf;fBhdxAL?>!(s^aS zYUO5dnvQi|Vqd4P-k$D?!BIXgCh**z^Zwn--Dq%{d|4bORkG()rq+Yw*}O1Sx#zsn zc`?(+`BiavIXKsPQXUkud7357SLDT@)qAq%2#?3RUa-qOhevy!x5ow05B}yXSu*%J z{7=q(e!hQpGG_-Ze~O_$Q+RCuI$OM~^Iw_Md=S6x z4ANOMvl=&eytNrW)3EV>@%+1fhmCusz8(Lbw~T)tApV62!YxN_;{U1qf335ua4&vL z{^ufC@xQYDAD5f_{}jWfd*`=Z=c>-f)Cp}TX3BTI4jf1Qg+Bh35B?l9Md6;970HvC zF1M$)LX4_KhMS!o$ZzuM|5g0!+7xr`j?3F05dYi@grxWnxbG_^1mfTK!cG78Bx7`5 zu!Ew`E3;t3lR8^CoYC<|4%shGam6l@{D$q{YJ-DOe?2Ozbe2?l!uGRDn;b`|Tg`Cj z($5BLyD-i~&vic0dF5c*q*Y-SJ8W)>PueCAHZSHbV@7Aq%H*;vvbxf2Qq-3jyuhx~ zX>BwE9E~K;>m=(g_-@U*si`UMs_X8u{ZE~ka;Kl&{$+aF$hUD45{Qb6ISn4kW4o%R5Y% zHY7|XET#-rFd-OuP@dF2sdK#o7_qlSmgEz11AOYYdsMCv44+*ug4(SqVlb)^li)-g z1MN_cTc7jZ=P|n|KqX617Dv6_!i5oH+G7}EkGv=DuC**D!UjGE>YH&@5UB8a=Wvgm z>*`t?+H6V4K}b$*kwpZml9yo74pwk(E-)B?Q(+NT^bT&=v842Sq5G@&9W$!%~ z#2tpR3y7eVQ=qd99$S=*zW)l(U^nsLJ>iiu8-qBs@4!5v>x4Q zq+bZC-r<0wTmmMMYeYv+D-(fnLEPGLb!QFoAw*)M z=e=qItcdNS*c#$^gqRIGEOH`+O+e|PjZIGJ7*YYHYJW}gh1ExQY4xQcH)K5)_KL#U z5J0kn$1Jv3lfJ3n$p2&S#0afuU?%w0Q8SpnBs|zU{1lkR~ZGFR~%` zsC=Q$qJ-@B5ZB+Zn zX;uh66VX~;Z#ltO8E8rhHtBMJ$z1hcUchv7<%TN+Xdc9x9wq-YR57WA9LLMhrj-z8%eSs`c} z#{Qb1wUE+MS@(!y6;ZZrT~{w*UMqwq$!>8?wS*H+lj^pG<9%9z{+NRKguI^xNJ=*R zdsryps@FwX+!iP*5wW+!LVrPl!D%~Pf8$vpa5C_MZ)7M$J(~H(dQ_l#e;~U{+iwNb z8%4{qD~M6bUtf7-2=3*T&NUixY96}+YblIb+!9JNA>s#V$(lc6r}bxSw5ZLL?CkgU zM`M6l?otHsu5wfKTV!jlwK^golB}Z0?TaZXrL8!X0Z!Lp=S;Ae zI_x(2K4`;XqvJBuIIuZqN!}tx;VPbJ*|9XoBd(pmX z!JU3!8+@cnl#N$44uwnA0=bId_as2Ell)hSB zXqo1;Ui9muemxE!k$7BIk)&UxmxkDDT4PGDUmkbMk#IvLtOGdCWFB%X)s^0QZJpm) z9!rn|akz0+*b@RAr(CPNZNJNQzB1|wX^5w+`UV0(z%|biCdWIbGmzenwHha;_Bm({fRBfKaTB>EvYU) zUM@b)i+SC=fL?)q`rrR>^8B7}fc}g3KT0T%-v0#B-@N~MQvbJafF?iU{f`Qk{`W)r z{a47%-~T+x_&~34zS{RYe-1t*S(=pnT}6NY)7;sgZSklsld1mNybs!@H$5LF%RkNe pI(Ul`SC#Zwe@