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I am using teflon_prep_custom.py to annotate the reference genome. In the TE database -l I am using, I found some letters rather than ATGC in the fasta file. I guess they are IUPAC code for some ambiguous bases.
I am wondering if teflon works with IUPAC code. Currently, it didn't raise any errors or warnings when I run teflon_prep_custom.py with IUPAC.
Thanks,
The text was updated successfully, but these errors were encountered:
Hi,
I am using
teflon_prep_custom.py
to annotate the reference genome. In the TE database-l
I am using, I found some letters rather thanATGC
in the fasta file. I guess they are IUPAC code for some ambiguous bases.I am wondering if teflon works with IUPAC code. Currently, it didn't raise any errors or warnings when I run
teflon_prep_custom.py
with IUPAC.Thanks,
The text was updated successfully, but these errors were encountered: