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similarity_GO semantic similarity methods #111

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drkgil opened this issue Oct 10, 2024 · 0 comments
Open

similarity_GO semantic similarity methods #111

drkgil opened this issue Oct 10, 2024 · 0 comments

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@drkgil
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drkgil commented Oct 10, 2024

When attempting to alter the default semantic similarity method while running the GO_similarity code, I found that the listed options were incorrect:

combined_mat <- GO_similarity(go_id, ont = "BP", measure = "Sim_GOGO_2018")
Error in match.arg(method) :
'arg' should be one of “Wang”, “Resnik”, “Rel”, “Jiang”, “Lin”, “TCSS”

I am unsure what method the Jiang and TCSS are referring to as the others match the listed options listed:
#' - "Sim_Lin_1998"
#' - "Sim_Resnik_1999"
#' - "Sim_Relevance_2006"
#' - "Sim_SimIC_2010"
#' - "Sim_XGraSM_2013"
#' - "Sim_EISI_2015"
#' - "Sim_AIC_2014"
#' - "Sim_Wang_2007"
#' - "Sim_GOGO_2018"

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