This describes the raw data files used in the analysis. These are processed to
clean data (files in data/) using the script R/process_raw_data.R
All checksums are 32-byte MD5 hashes generated with tools::md5sum() in R.
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forest_area_zip_files: Folder containing 47 zip files, each with SHP files containing the distribution of forest areas in Japan (one per prefecture) downloaded from https://nlftp.mlit.go.jp/ksj/gml/datalist/KsjTmplt-A45.html. Downloaded using scriptR/download_forest_shape.R. For MD5 checksums, see forest_area_zip_files_checksums.txt -
world-clim: Folder containing data downloaded from the WorldClim database at 2.5 minute resolution using the following R command on 2021-04-23.raster::getData("worldclim", download = TRUE, var = "bio", res = 2.5, path = "data_raw/world_clim"). For MD5 checksums, see world_clim_checksums.txt -
doi_10.5061_dryad.4362p32__v4.zip: data files from Ebihara and Nitta 2019 downloaded from https://datadryad.org/stash/dataset/doi:10.5061/dryad.4362p32. MD5 checksum: 4ae5355c524ab47336d3fe56bf7aa440 -
gm-jpn-all_u_2_2.zip: Political map of Japan downloaded from https://www.gsi.go.jp/kankyochiri/gm_japan_e.html. MD5 checksum: d296fa71a08346c4c0a172cbf235e266 -
JP_pterid_excl_hyb200620.xlsx: Raw occurrence points for pteridophytes in Japan excluding hybrids. MD5 checksum: 8ddc1cd9efd11ae72cfa7106003fea15 -
Lucid20210807.xlsx: Trait data for pteridophytes in Japan exported from Lucid (https://www.lucidcentral.org/). For more information on data formatting, see https://help.lucidcentral.org/lucid/scoring-the-key/. MD5 checksum: 4d3b891bd5eca15b0e0ce2e47ae7481e -
map14-1.zip: Shape and tiff files of Japanese deer distribution in Japan downloaded from https://www.biodic.go.jp/biodiversity/activity/policy/map/files/map14-1.zip on 2021-09-01. Provided by Japan Ministry of the Environment. For more information, see https://www.biodic.go.jp/biodiversity/activity/policy/map/map14/index.html (in Japanese). MD5 checksum: 112300bf61659c96605ac25d97653785 -
map17.zip: Shape files of protected areas in Japan downloaded from https://www.biodic.go.jp/biodiversity/activity/policy/map/map17/index.html on 2020-07-15. Provided by Japan Ministry of the Environment. MD5 checksum: 512db536dff2eb825fa9c1ca2c72a157 -
mesh2.zip: Zipped shp file of second-degree mesh codes for Japan. Downloaded from http://gis.biodic.go.jp/BiodicWebGIS/Questionnaires?kind=mesh2&filename=mesh2.zip on 2020-07-07. MD5 checksum: 8d429db0b1a36c9132bc171094419d4c