#Getting started
##Requirements
-
compilers
- C/C++
- Fortran
-
libraries and development headers
- bzip2 (Perl, R, Python)
- openssl (Python, )
- gdbm (Python)
- sqlite3 (Python)
- tk (Python)
- png (Python)
- Xwindows (R)
- PCRE (Python, R)
Note: gcc 8 through 14 work well for this. LLVM tends to be able to compile most of these packages though there are occassional compatibility issues. If you would like to adjust which compiler is used, options for the compilation, paths to the compiler, make a (backup) copy of
config/compiler.config.$OS
where $OS is the lower case version of the output of uname for the system you are
building this on. Right now linux and darwin (mac OSX) are supported. We have supported SmartOS
and FreeBSD in the past, but this support has been removed.
##Building
TL;DR version: cd scripts sudo ./prep_$OS.sh
where $OS is debian1{1,2}, ubuntu2{2,4}.04, rocky8, or mac. Then cd .. make
Note: this will take a long time, as several of the codes are quite time consuming to build. The process is (mostly) automated, and undergoing rapid development. The builds are done in parallel whenever possible.
Note: if you are building on Mac, homebrew is strongly recommended, and is the basis of the prep_mac.sh script.
To build everything after installing any dependencies
make
To build a specific project
make -f Makefile.$project
To clean up everything
make clean
To clean up a specific project
make -f Makefile.$project clean