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Found a path not build #181

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fgbxx opened this issue Nov 23, 2022 · 3 comments
Open

Found a path not build #181

fgbxx opened this issue Nov 23, 2022 · 3 comments

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@fgbxx
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fgbxx commented Nov 23, 2022

hi, guys,
thanks for your tools, it is very useful!
I have found a case to report if this is bug or not.
I use the skimage.morphology.skeletonize to generate the 3D vessel skeleton, and use skan.Skeletonto do analysis.
But I found a case that a pixel have the connection with another(with 27-neighbourhood), and double confirm the degree match the skeleton image. But the path not exist as the bellow red one, so what is the reason or is it a bug?
image

@fgbxx fgbxx changed the title Found a patch not build Found a path not build Nov 23, 2022
@fgbxx
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fgbxx commented Nov 24, 2022

@jni could you help me?

@jni
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jni commented Dec 2, 2022

@fgbxx sorry for the delay! Could you provide some sample data and a script so I can investigate? The smaller the better. Typically, if you do like a 21x21x21 pixel window around the connection of interest in the binary skeleton, that will be enough to reproduce the error.

@jni
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jni commented Jan 30, 2023

Hi @fgbxx, I will be happy to investigate this bug but I would need a reproducible example to get anywhere!

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