Chromosome rearrangement statistics

[waterwoodhu]

Hi, thank you for providing an excellent tool. I have successfully run the analysis on the genomes of six species. I have a question: if I want to know the specific rearrangements of each species' chromosomes relative to the ancestral chromosomes, which files should I retrieve?

For example, I want to find the statistics like the paper listed:

[jkimlab]

You can use the “APCFs" file which contains the list of aligned chromosomal regions for each species against each ancestral chromosome.

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On Dec 27, 2024, at 9:06 PM, waterwoodhu ***@***.***> wrote: Hi, thank you for providing an excellent tool. I have successfully run the analysis on the genomes of six species. I have a question: if I want to know the specific rearrangements of each species' chromosomes relative to the ancestral chromosomes, which files should I retrieve? For example, I want to find the statistics like the paper listed: — Reply to this email directly, view it on GitHub <#29>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEU6PV45QZM2HCQ5MJHHFXL2HU7DRAVCNFSM6AAAAABUIRFCVGVHI2DSMVQWIX3LMV43ASLTON2WKOZSG43DAOBQGMZDMMA>. You are receiving this because you are subscribed to this thread.