DESCRIPTION

Package: pqsfinder
Type: Package
Title: Identification of potential quadruplex forming sequences
Version: 0.99.2
Authors@R: c(person("Jiri", "Hon", role = c("aut", "cre"),
                    email = "jiri.hon@gmail.com"),
             person("Matej", "Lexa", role = "ctb",
                    email = "lexa@fi.muni.cz"),
             person("Tomas", "Martinek", role = "ctb",
                    email = "martinto@fit.vutbr.cz"))
Author: Jiri Hon, Matej Lexa and Tomas Martinek
Maintainer: Jiri Hon <jiri.hon@gmail.com>
Description: The main functionality of the this package is to detect DNA
    sequence patterns that are likely to fold into an intramolecular
    G-quadruplex (G4). Unlike many other approaches, this package is able
    to detect sequences responsible for G4s folded from imperfect G-runs
    containing bulges or mismatches and as such is more sensitive than
    competing algorithms.
License: BSD_2_clause + file LICENSE
biocViews: MotifDiscovery, SequenceMatching, GeneRegulation
LazyData: TRUE
Depends:
    Biostrings
Imports:
    Rcpp (>= 0.12.3),
    GenomicRanges,
    IRanges,
    S4Vectors,
    methods
Suggests:
    BiocStyle,
    knitr,
    Gviz,
    rtracklayer,
    biomaRt,
    BSgenome.Hsapiens.UCSC.hg38
LinkingTo: Rcpp, BH, flowCore
VignetteBuilder: knitr
RoxygenNote: 5.0.1