tower.yml

reports:
  multiqc_report.html:
    display: "MultiQC HTML report"
  "**/report/*report.pdf":
    display: "Organism Discovery Report(s)"
  "**/report/*report.txt":
    display: "Organism Discovery Analysis"
  "**/convert/*merged.tsv":
    display: "Confidence Table"
  "**/krona/*.html":
    display: "Krona Plots"
  "**/fastqc/*_fastqc.html":
    display: "FASTQC output (Illumina Only)"
  "**/nanoplot/*_NanoPlot-report.html":
    display: "Nanoplot output (Nanopore Only)"
  "**/fastp/*.fastp.html":
    display: "fastp output (QC Trimming)"
  "**/samtools/*.txt":
    display: "Coverage, Base Quality, and Map Stats"
  "**/bcftools/*consensus.fa":
    display: "Consensus Generation File"
  "**/bcftools/*consensus.fa":
    display: "Consensus Generation File"
  "**/minimap2/*.bam":
    display: "MAPQ Filtered and Sorted Minimap2 BAM File(s)"
  "**/hisat2/*.bam":
    display: "MAPQ Filtered and Sorted Hisat2 BAM File(s)"
  "**/bowtie2/*.bam":
    display: "MAPQ Filtered and Sorted Bowtie2 BAM File(s)"
  "**/samtools/*.bam":
    display: "MAPQ Filtered and Sorted and Merged (if multiple reference files) BAM File(s)"
  "**/top/*top_report.tsv":
    display: "Top Taxa Per Rank post-Kraken2"
  "**/top/krakenreport.merged_mqc.tsv":
    display: "All Samples Top Hits Post-Kraken2"
  "**/kraken2/*report.txt":
    display: "Raw Kraken2 Reports"