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dev_setup.py
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from setuptools import setup
import sys
import glob
import pkgutil
setup(
name='CombiVEP_dev',
version='0.1.1',
author='Jessada Thutkawkorapin',
author_email='[email protected]',
packages=['combivep',
'combivep.engine',
'combivep.engine.test',
'combivep.refdb',
'combivep.refdb.test',
'combivep.preproc',
'combivep.preproc.test',
'combivep.devtools',
],
scripts=['bin/CombiVEP_reference_updater',
'bin/CombiVEP_predictor',
'bin/CombiVEP_trainer',
'bin/dev_report_preproc',
'bin/dev_report_filtering',
'bin/dev_report_figures',
'bin/dev_report_precision',
'bin/dev_demo_training',
'bin/dev_demo_predicting',
'bin/dev_condel_01_submit_to_condel',
'bin/dev_condel_02_get_condel_result',
],
package=['CombiVEP'],
package_data={'': ['data/CBV/*.cbv'],
'': ['data/CBV/*.scores'],
},
data_files=[('combivep/data/CBV', ['combivep/data/CBV/training.cbv',
'combivep/data/CBV/test.cbv',
'combivep/data/CBV/training.cbv.clean',
'combivep/data/CBV/test.cbv.clean',
'combivep/data/CBV/training.cbv.scores',
'combivep/data/CBV/test.cbv.scores',
]),
],
url='http://pypi.python.org/pypi/combivep_dev/',
license='LICENSE.txt',
description='Combined Variant Effect Predictors',
long_description=open('README.txt').read(),
install_requires=["pysam >= 0.7"],
)