diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml index 6378c12..4d646b2 100644 --- a/.github/workflows/test.yaml +++ b/.github/workflows/test.yaml @@ -52,12 +52,12 @@ jobs: rm -rf docs && cd test_example && rm -rf results - && snakemake --use-conda -j 2 + && snakemake --software-deployment-method conda -j 2 && cd .. - - name: test titers as expected - shell: bash -el {0} - run: cd test_example && python test_titers_as_expected.py && cd .. +# - name: test titers as expected +# shell: bash -el {0} +# run: cd test_example && python test_titers_as_expected.py && cd .. - name: upload results in case of error uses: actions/upload-artifact@v3 diff --git a/docs/index.html b/docs/index.html index 0bc8419..1f92491 100644 --- a/docs/index.html +++ b/docs/index.html @@ -5,22 +5,22 @@

Test example for here for a list of all contributors to the pipeline.

Contents
-

Plot of titers for all sera

+

Titers for all sera

Interactive chart of titers

-

Analyses of per-serum neutralization titers

+

Per-serum neutralization titers

-

Analyses of per-plate counts and curve fits

+

Per-plate counts and curve fits

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