From 059c5e718f95f4b4ab6ae4f75c76d302c62f4a99 Mon Sep 17 00:00:00 2001
From: jbloom <jbloom@fredhutch.org>
Date: Fri, 30 Aug 2024 13:28:58 -0700
Subject: [PATCH] update doc links to new Bloom lab webpage

---
 README.rst               | 2 +-
 docs/acknowledgments.rst | 2 +-
 docs/conf.py             | 4 ++--
 docs/index.rst           | 2 +-
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/README.rst b/README.rst
index c242bb20..d56aec8c 100644
--- a/README.rst
+++ b/README.rst
@@ -16,7 +16,7 @@ polyclonal
 
 Model mutational escape from polyclonal antibodies using deep mutational scanning data.
 
-``polyclonal`` is a Python package written by `the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_.
+``polyclonal`` is a Python package written by `the Bloom lab <https://jbloomlab.org>`_.
 
 See `Yu et al (2022) <https://doi.org/10.1093/ve/veac110>`_ for an explanation of the approach implemented in ``polyclonal``.
 
diff --git a/docs/acknowledgments.rst b/docs/acknowledgments.rst
index d740dcd7..9b78a339 100644
--- a/docs/acknowledgments.rst
+++ b/docs/acknowledgments.rst
@@ -1,6 +1,6 @@
 Acknowledgements
 -----------------
-``polyclonal`` is written by `the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_.
+``polyclonal`` is written by `the Bloom lab <https://jbloomlab.org>`_.
 
 The citation for ``polyclonal`` is `Yu et al (2022) <https://doi.org/10.1093/ve/veac110>`_.
 
diff --git a/docs/conf.py b/docs/conf.py
index 4c53707a..e6c7ac91 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -67,7 +67,7 @@
 # General information about the project.
 project = "polyclonal"
 copyright = f"2019--{datetime.datetime.now().year}"  # noqa: A001
-author = "`the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_"
+author = "`the Bloom lab <https://jbloomlab.org/>`_"
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the
@@ -192,7 +192,7 @@
         master_doc,
         "polyclonal.tex",
         "polyclonal Documentation",
-        "`the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_",
+        "`the Bloom lab <https://jbloomlab.org>`_",
         "manual",
     ),
 ]
diff --git a/docs/index.rst b/docs/index.rst
index 4ad6b31e..b47a5fe8 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -3,7 +3,7 @@
 
 ``polyclonal`` is a Python package for modeling mutational escape from polyclonal antibodies using deep mutational scanning data.
 
-It is written by `the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_.
+It is written by `the Bloom lab <https://jbloomlab.org>`_.
 
 See `Yu et al (2022) <https://doi.org/10.1093/ve/veac110>`_ for an explanation of the approach implemented in ``polyclonal``.