From 2f681afb17c1d029ae8c2e536591e4529663b869 Mon Sep 17 00:00:00 2001 From: jbloom Date: Wed, 10 Apr 2024 15:51:03 -0700 Subject: [PATCH] remove apparently obsolete `gnuplot` color map --- CHANGELOG.rst | 2 +- dms_variants/codonvarianttable.py | 1 - 2 files changed, 1 insertion(+), 2 deletions(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 617c392..437617b 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -9,7 +9,7 @@ The format is based on `Keep a Changelog `_. 1.6.0 ----- - Added ability to parse second upstream / downstream region in ``IlluminaBarcodeParser`` by adding ``upstream2`` and ``downstream2`` parameters. Also modified ``IlluminaBarcodeParser`` so that reads will only be parsed if they are long enough to fully cover the region containing the barcodes and specified upstream / downstream sequences. Based on docs, this is how it was supposed to function before but did not. Additionally, this adds another row ("reads too short") to the fates from the barcode parser, as well as the ``outer_flank_fates`` option to report just failing the additional upstream and downstream regions. - +- Change default color of heatmaps made by ``CodonVariantTable`` due to current one being obsolete. - Remove obsolete ``guide=False`` from some ``plotnine`` plots in examples / tests (this was removed in ``plotnine`` version 0.13). 1.5.0 diff --git a/dms_variants/codonvarianttable.py b/dms_variants/codonvarianttable.py index 500cb21..7665566 100644 --- a/dms_variants/codonvarianttable.py +++ b/dms_variants/codonvarianttable.py @@ -1934,7 +1934,6 @@ def plotMutHeatmap( expand=(0, 0), ) + p9.ylab(mut_desc) - + p9.scale_fill_cmap("gnuplot") ) if samples is None: