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CHANGELOG.rst

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog.

0.7

  • Test with GitHub Actions rather than Travis, lint with ruff rather than flake8.
  • Switch scipy sparse matrices to arrays (see [this issue](#6)).

0.6

  • Allow negative site numbers.

0.5

  • Added sites_as_str option to BinaryMap to enable non-integer site numbers (e.g., "214a").
  • black formatting of code.

0.4

  • Gaps are now allowed in allowed_subs as a - character.
  • Added AAS_NOSTOP_WITHGAP and AAS_WITHSTOP_WITHGAP.
  • Substitutions in BinaryMap now sorted according to input alphabet (before they were alphabetical).

0.3

Added binary_sites attribute.

0.2

Added allowed_subs parameter.

0.1

Initial version of code ported from dms_variants version 0.8.10.