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.gitignore
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.*
!.git*
_*
*.out
####################################---START HSV1---#######################################
HSV1/Results/*
!HSV1/Results/HSV1_gB
HSV1/Results/HSV1_gB/*
!HSV1/Results/HSV1_gB/metadata.tsv
!HSV1/Results/HSV1_gB/nucleotide.fasta
!HSV1/Results/HSV1_gB/Alignments
HSV1/Results/HSV1_gB/Alignments/*
!HSV1/Results/HSV1_gB/Alignments/protein_ungapped_no_outgroup.fasta
!HSV1/Results/HSV1_gD
HSV1/Results/HSV1_gD/*
!HSV1/Results/HSV1_gD/metadata.tsv
!HSV1/Results/HSV1_gD/nucleotide.fasta
!HSV1/Results/HSV1_gD/Alignments
HSV1/Results/HSV1_gD/Alignments/*
!HSV1/Results/HSV1_gD/Alignments/protein_ungapped_no_outgroup.fasta
!HSV1/Results/HSV1_gH
HSV1/Results/HSV1_gH/*
!HSV1/Results/HSV1_gH/metadata.tsv
!HSV1/Results/HSV1_gH/nucleotide.fasta
!HSV1/Results/HSV1_gH/Alignments
HSV1/Results/HSV1_gH/Alignments/*
!HSV1/Results/HSV1_gH/Alignments/protein_ungapped_no_outgroup.fasta
!HSV1/Results/HSV1_gL
HSV1/Results/HSV1_gL/*
!HSV1/Results/HSV1_gL/metadata.tsv
!HSV1/Results/HSV1_gL/nucleotide.fasta
!HSV1/Results/HSV1_gL/Alignments
HSV1/Results/HSV1_gL/Alignments/*
!HSV1/Results/HSV1_gL/Alignments/protein_ungapped_no_outgroup.fasta
####################################---END HSV1---#########################################
####################################---START EBV---########################################
EBV/Results/*
!EBV/Results/EBV_gB
EBV/Results/EBV_gB/*
!EBV/Results/EBV_gB/metadata.tsv
!EBV/Results/EBV_gB/nucleotide.fasta
!EBV/Results/EBV_gB/Alignments
EBV/Results/EBV_gB/Alignments/*
!EBV/Results/EBV_gB/Alignments/protein_ungapped_no_outgroup.fasta
!EBV/Results/EBV_gp42
EBV/Results/EBV_gp42/*
!EBV/Results/EBV_gp42/metadata.tsv
!EBV/Results/EBV_gp42/nucleotide.fasta
!EBV/Results/EBV_gp42/Alignments
EBV/Results/EBV_gp42/Alignments/*
!EBV/Results/EBV_gp42/Alignments/protein_ungapped_no_outgroup.fasta
!EBV/Results/EBV_gH
EBV/Results/EBV_gH/*
!EBV/Results/EBV_gH/metadata.tsv
!EBV/Results/EBV_gH/nucleotide.fasta
!EBV/Results/EBV_gH/Alignments
EBV/Results/EBV_gH/Alignments/*
!EBV/Results/EBV_gH/Alignments/protein_ungapped_no_outgroup.fasta
!EBV/Results/EBV_gL
EBV/Results/EBV_gL/*
!EBV/Results/EBV_gL/metadata.tsv
!EBV/Results/EBV_gL/nucleotide.fasta
!EBV/Results/EBV_gL/Alignments
EBV/Results/EBV_gL/Alignments/*
!EBV/Results/EBV_gL/Alignments/protein_ungapped_no_outgroup.fasta
####################################---END EBV---##########################################
####################################---START HSV2---#######################################
HSV2/Results/*
!HSV2/Results/HSV2_gB
HSV2/Results/HSV2_gB/*
!HSV2/Results/HSV2_gB/metadata.tsv
!HSV2/Results/HSV2_gB/nucleotide.fasta
!HSV2/Results/HSV2_gB/Alignments
HSV2/Results/HSV2_gB/Alignments/*
!HSV2/Results/HSV2_gB/Alignments/protein_ungapped_no_outgroup.fasta
!HSV2/Results/HSV2_gD
HSV2/Results/HSV2_gD/*
!HSV2/Results/HSV2_gD/metadata.tsv
!HSV2/Results/HSV2_gD/nucleotide.fasta
!HSV2/Results/HSV2_gD/Alignments
HSV2/Results/HSV2_gD/Alignments/*
!HSV2/Results/HSV2_gD/Alignments/protein_ungapped_no_outgroup.fasta
!HSV2/Results/HSV2_gH
HSV2/Results/HSV2_gH/*
!HSV2/Results/HSV2_gH/metadata.tsv
!HSV2/Results/HSV2_gH/nucleotide.fasta
!HSV2/Results/HSV2_gH/Alignments
HSV2/Results/HSV2_gH/Alignments/*
!HSV2/Results/HSV2_gH/Alignments/protein_ungapped_no_outgroup.fasta
!HSV2/Results/HSV2_gL
HSV2/Results/HSV2_gL/*
!HSV2/Results/HSV2_gL/metadata.tsv
!HSV2/Results/HSV2_gL/nucleotide.fasta
!HSV2/Results/HSV2_gL/Alignments
HSV2/Results/HSV2_gL/Alignments/*
!HSV2/Results/HSV2_gL/Alignments/protein_ungapped_no_outgroup.fasta
####################################---END HSV2---#########################################