cluster.yaml

# cluster configuration for running Snakefile on Hutch cluster

__default__:
  cpus: 4
  time: 0-4
  mem: 32000
  name: "{rule}"
  constraint: '"gizmog|gizmoj|gizmok"'

build_ccs:
  cpus: 8
  time: 4-0
  mem: 100000

process_ccs:
  cpus: 4
  time: 1-0
  mem: 250000

count_variants:
  cpus: 8
  time: 1-0
  mem: 100000

calculate_expression:
  cpus: 8
  time: 1-0
  mem: 100000
  constraint: gizmok

fit_titrations:
  cpus: 4
  time: 1-0
  mem: 100000
  constraint: gizmok

calculate_PSR_binding:
  cpus: 8
  time: 1-0
  mem: 100000
  constraint: gizmok
  
collapse_scores:
  cpus: 4
  time: 1-0
  mem: 32000
  constraint: gizmok