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jandot edited this page Sep 13, 2010
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For v0.8 you’ll have to do quite a few things manually.
- Make sure the prerequisites are in place
- Get your datafiles into the data/ directory in the right format (see FileFormat)
- Change the filenames in parp.rb
- Run the script create_continuous_index.rb script to extract the first and last line number of readdepth data for each chromosome
- Run “jruby ./parp.rb”
- jruby
- ruby-processing
This Processing tool makes heavy use of Buffers. See the link for a full explanation of how these were set up.