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citing.html
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<!doctype html>
<html lang="en">
<head>
<!-- Required meta tags -->
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta http-equiv="Cache-Control" content="no-cache, no-store, must-revalidate" />
<meta http-equiv="Pragma" content="no-cache" />
<meta http-equiv="Expires" content="0" />
<link rel="shortcut icon" href="favicon.ico">
<!-- Bootstrap CSS -->
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.4.1/css/bootstrap.min.css" integrity="sha384-Vkoo8x4CGsO3+Hhxv8T/Q5PaXtkKtu6ug5TOeNV6gBiFeWPGFN9MuhOf23Q9Ifjh" crossorigin="anonymous">
<script src="https://code.jquery.com/jquery-3.4.1.slim.min.js" integrity="sha384-J6qa4849blE2+poT4WnyKhv5vZF5SrPo0iEjwBvKU7imGFAV0wwj1yYfoRSJoZ+n" crossorigin="anonymous"></script>
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/umd/popper.min.js" integrity="sha384-Q6E9RHvbIyZFJoft+2mJbHaEWldlvI9IOYy5n3zV9zzTtmI3UksdQRVvoxMfooAo" crossorigin="anonymous"></script>
<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.4.1/js/bootstrap.min.js" integrity="sha384-wfSDF2E50Y2D1uUdj0O3uMBJnjuUD4Ih7YwaYd1iqfktj0Uod8GCExl3Og8ifwB6" crossorigin="anonymous"></script>
<title>About the T-box Database</title>
<link type="text/css" rel="stylesheet" href="css/style.css"/>
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=UA-121083048-5"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'UA-121083048-5');
</script>
</head>
<body>
<!-- Nav bar start-->
<nav class="navbar navbar-expand-md navbar-dark bg-dark fixed-top pt-3 mx-auto pr-5 pl-5" >
<div class="navbar-collapse collapse w-100 order-3 dual-collapse2">
<div class="container">
<a class="navbar-brand" href="https://tbdb.io/">
<img src="../logo/TBDB_logo_1_no_fill_white_white.png" height="40 px" alt="tbdb_logo">
</a>
</div>
<ul class="navbar-nav ml-auto pr-5">
<a class="navbar-brand" href="https://tbdb.io/"><strong>T-box</strong> Database</a>
<button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarsExampleDefault" aria-controls="navbarsExampleDefault" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarsExampleDefault">
<ul class="navbar-nav mr-auto">
<li class="nav-item dropdown active">
<a class="nav-link dropdown-toggle" href="#" id="dropdown01" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">about</a>
<div class="dropdown-menu" aria-labelledby="dropdown01">
<a class="dropdown-item" href="https://tbdb.io/about.html">about TBDB</a>
<a class="dropdown-item" href="https://tbdb.io/tbox_background.html">tbox background</a>
<a class="dropdown-item" href="https://tbdb.io/faq.html">faq</a>
<a class="dropdown-item" href="https://tbdb.io/citing.html">how to cite</a>
<a class="dropdown-item" href="https://tbdb.io/contact.html">contact</a>
</div>
</li>
<li class="nav-item dropdown active">
<a class="nav-link dropdown-toggle" href="#" id="dropdown01" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">database</a>
<div class="dropdown-menu" aria-labelledby="dropdown01">
<a class="dropdown-item" href="https://tbdb.io/tbdb.html">browse</a>
<a class="dropdown-item" href="https://tbdb.io/advanced_search.html">advanced search</a>
<a class="dropdown-item" href="https://tbdb.io/specifier_use.html">specifier use table</a>
<a class="dropdown-item" href="https://tbdb.io/database/tbdb.csv">download tdbd</a>
</div>
</li>
<li class="nav-item dropdown active">
<a class="nav-link dropdown-toggle" href="#" id="dropdown01" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">tools</a>
<div class="dropdown-menu" aria-labelledby="dropdown01">
<a class="dropdown-item" href="https://github.com/jamarchand/tbox-scan">tbox-scan</a>
</div>
</li>
<li class="nav-item dropdown active">
<a class="nav-link dropdown-toggle" href="#" id="dropdown01" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">repository</a>
<div class="dropdown-menu" aria-labelledby="dropdown01">
<a class="dropdown-item" href="https://github.com/jamarchand/tboxdb">site</a>
<a class="dropdown-item" href="https://github.com/mpiersonsmela/tbox">source code</a>
</div>
</li>
</ul>
</div>
</ul>
</div>
</nav>
<!-- Nav bar end-->
<main role="main" class="container">
<div class="pl-5 pr-5">
<br><br><br>
<div class="pt-4">
<div class="pt-4"><h2>How to cite TBDB</h2></div>
<h3 class="text-justify">If you have used TBDB in a publication, please cite the following reference:</h3>
<ul id="bulletpoint">
Marchand, J. A., Pierson Smela, M. D., Jordan, T. H. H., Narasimhan, K. & Church, G. M. (2020). TBDB – A database of structurally annotated T-box riboswitch:tRNA pairs. <i>BioRxiv.</i>
<br>
<a href="https://www.biorxiv.org/content/10.1101/2020.06.17.157016v1">BioRxiv Article</a>
</ul>
<h3 class="text-justify">You can download the code used for T-box detection and prediction source code from our <a href="https://github.com/mpiersonsmela/tbox">our Github.</a></h3>
<h4 class="pt-5"> Citing our database sources</h4>
<h3 class="text-justify">References for the data sources used to generate the TBDB can be found here</h3>
<ul class="text-justify" id="bulletpoint">
D. A. Abdala, R. Ciria and E. Merino GeConT 3: gene context analysis for orthologous proteins, conserved domains and metabolic pathways. Nucleic Acids Research (2003).
<br>
<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447741/">GeCont3 Article</a></br></ul>
<ul class="text-justify" id="bulletpoint">
I. Kalvari, J. Argasinska, N. Quinones-Olvera, E. P. Nawrocki, E. Rivas, S. R. Eddy, A. Bateman, R. D. Finn, A. I. Petrov. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.
Nucleic Acids Research (2017) 10.1093/nar/gkx1038
<br>
<a href="https://academic.oup.com/nar/article/46/D1/D335/4588106">RFAM Article</a></br></ul>
<ul class="text-justify" id="bulletpoint">
A. G. Vitreschak, A. A. Mironov V. A. Lyubetsky, and M. S. Gelfand. Comparative genomic analysis of T-box regulatory systems in bacteria. RNA (2007)
<br>
<a href="https://dx.doi.org/10.1261/rna.819308">Article</a></br></ul>
</ul>
</div>
</div>
</html>