_pkgdown.yml

url: jackbibby1.github.io/SCPA

title: Single Cell Pathway Analysis (SCPA)

template:
  params:
    bootswatch: flatly
    ganalytics: G-W1XR84YEPZ
  docsearch:
    api_key: 707823119dd85fca87c488f81a2086dd
    index_name: single-cell-pathway-analysis

navbar:
  structure:
    left: [home, tutorials, reference, news]
    right: [github]
  components:
    tutorials:
      text: Tutorials
      menu:
      - text: General information
      - text: Interpreting the SCPA output
        href: articles/interpreting_scpa_output.html
      - text: ------------
      - text: Generic example
      - text: Quick start
        href: articles/quick_start.html
      - text: ------------
      - text: Speeding up SCPA
      - text: Parallel processing for faster analysis
        href: articles/parallel_implementation.html
      - text: ------------
      - text: Interacting with gene sets
      - text: Using gene sets
        href: articles/using_gene_sets.html
      - text: ------------
      - text: Specific examples
      - text: Comparing two populations
        href: articles/comparing_two_populations.html
      - text: Seurat/SingleCellExperiment comparison
        href: articles/seurat_comparison.html
      - text: Comparing across pseudotime
        href: articles/pseudotime.html
      - text: Systematic comparisons of cells across tissue
        href: articles/systematic_tissue_comparison.html
      - text: Systems level pathway analysis in disease
        href: articles/disease_comparison.html
      - text: ------------
      - text: Visualisation
      - text: Visualising SCPA output
        href: articles/visualisation.html