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news.txt
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Changes history :
2020/12/21 :
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Vignette update.
2020/12/18 :
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Added and modified plots :
* Plot depletion and enrichment (added)
* Plot gene position (added)
* Plot Relative Island position (modified)
Modified enrichment script for a CpG list (without other data)
* Partially Methylated Domains - PMD (Placenta)
* Imprinting regions - DMR (Placenta)
* ROADMAP - Fetal Placenta 15 and 18 (Placenta)
* ROADMAP - Chromatin States (Blood)
Added new functions to perform enrichment for a CpG list
2020/12/15 :
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Vignette update
2020/12/11 :
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Changed version to 0.1.1
Changed scripts folder, now the scripts for Quality Control, Meta-Analysis and Enrichment are in module_scripts folder
Meta-Analysis :
* threshold variable in meta-analysis configuration variables, this threshould is used in venn diagrams
Vignette :
* The meta-analysis part has been modified
* The vignette has been updated with recent changes.
2020/12/10 :
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Enrichment :
* Added ConsensusPath enrichment for OverExpression analysis
2020/11/27 :
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MetaAnalysis :
* Added option to specify array type for each meta-analysis
Enrichment :
* Added option to specify array type for each Enrichment