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csv2Json.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
<html>
<head>
<script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.3.2/jquery.min.js"></script>
<script type="text/javascript" language="javascript" src="dataTableScripts/media/js/jquery.js"></script>
<script type="text/javascript" language="javascript" src="dataTableScripts/media/js/jquery.dataTables.js"></script>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<title>caMicroscope</title>
<link rel="stylesheet" href="bootstrap/css/bootstrap.css">
<link rel="stylesheet" href="css/csv2Json.css">
<!--<script class="jsbin" src="http://datatables.net/download/build/jquery.dataTables.nightly.js"></script>-->
<script async>
$(document).ready(function() {
var queries = window.location.search;
$.getJSON("api/Data/retreiveClinicalData.php" + queries,function(displayData){
jsonResult = displayData;
var cameFromServer = {
"bJqueryUI" : "true",
"sPaginationType" :"bootstrap",
"sdom" : "<'row'<'span6'l><'span6'f>r>t<'row'<'span6'i><'span6'p>>"};
cameFromServer.aaData = jsonResult[0];
cameFromServer.aoColumns = jsonResult[2];
cameFromServer.nextTableName = jsonResult[1];
cameFromServer.expectedPropertiesNames = jsonResult[6];
cameFromServer.expectedPropertiesIndices = jsonResult[4];
cameFromServer.urlColumnIndex = jsonResult[3];
$('#tableHeading').text(jsonResult[5]);
intializedTable = $('#example').dataTable(cameFromServer);
$.extend( $.fn.dataTableExt.oStdClasses, {
"sWrapper": "dataTables_wrapper form-inline"
} );
var oTable = $('#example').dataTable();
//oTable.$("#example tbody tr")
$(oTable.fnGetNodes()).click(function () {
var data = oTable.fnGetPosition(this);
var rowData = oTable.fnGetData(data);
var tissueId = rowData[0];
if(cameFromServer.urlColumnIndex == -1)
{
//$.getJSON("api/retrieveImageLink.php?tissueId=" + tissueId,function(link) {
var viewer = getParameterByName("viewer");
//response = link;
//window.open(response);
if(viewer == "osd")
window.open("osdCamicroscope.php?tissueId=" + tissueId);
else if(viewer == "moo")
window.open("mooCamicroscope.php?tissueId=" + tissueId);
//});
}
else
{
var url = "tableView?tabletype="+cameFromServer.nextTableName;
if(cameFromServer.expectedPropertiesIndices.length > 0)
{
url += "&";
for(var i = 0; i < cameFromServer.expectedPropertiesIndices.length; i++)
{
url+=cameFromServer.expectedPropertiesNames[i]+"="+rowData[cameFromServer.expectedPropertiesIndices[i]];
if(!(i+1) < cameFromServer.expectedPropertiesIndices.length)
url+="&";
}
}
window.open(url,"_self");
}
});
});
} );
function getParameterByName(name)
{
name = name.replace(/[\[]/, "\\[").replace(/[\]]/, "\\]");
var regex = new RegExp("[\\?&]" + name + "=([^&#]*)"),
results = regex.exec(location.search);
return results == null ? "" : decodeURIComponent(results[1].replace(/\+/g, " "));
}
</script>
<script class="jsbin" src="js/datatables/paging.js"></script>
<script class="jsbin" src="bootstrap/js/bootstrap.js"></script>
</head>
<body id="dt_example">
<!-- <div class="navbar navbar-fixed-top">
<div class="navbar-inner">
<div class="container">
<a class="brand" href="#">caMicroscope 2.0: Click on row to launch image using OpenSeadragon</a>
<div class="navbar-content">
<ul class="nav pull-right">
<li class="active">
<span class="label pull-right label-success" id = "tableHeading">tableHeading</span>
</li>
</ul>
</div>
</div>
</div>
</div>
-->
<div class="container">
<div class="header">
<ul class="nav pull-right nav-pills">
<li>
<a href="#myModal" data-toggle="modal" data-target="#myModal">Help</a>
</li>
</ul>
<h3 class="text-info" id = "tableHeading">tableHeading</h3>
</div>
</div>
<div class = "container" id="specimenData" style="overflow:auto;">
<!-- Start BC
<ul class="breadcrumb">
<li>
<a href="/DataViewer/">Home</a> <span class="divider"></span>
</li>
//Bread Crumb
</ul>
End BC -->
<table cellpadding="0" cellspacing="0" border="0" class="table table-striped table-bordered" id="example">
<thead></thead>
<tfoot></tfoot>
</table>
</div>
</div>
<div class="modal fade" id="myModal">
<div class="modal-dialog">
<div class="modal-content">
<div class="modal-header">
<button type="button" class="close" data-dismiss="modal"
aria-hidden="true">×</button>
<h4 class="modal-title">Help</h4>
</div>
<div class="modal-body">
<p class="h4">Click on any row to see the image in caMicroscope.</p>
<p class="para">This data on this site includes clinical data and whole slide images from the TCGA Breast Invasive Carcinoma (BRCA). More details on the data can be found <a href="https://tcga-data.nci.nih.gov/tcga/tcgaCancerDetails.jsp?diseaseType=BRCA&diseaseName=Breast%20invasive%20carcinoma">here</a></p>
</div>
</div>
</div>
</div>
</body>
</html>