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Refactor common default CLI argument values #336

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leoisl opened this issue Jul 17, 2023 · 0 comments
Open

Refactor common default CLI argument values #336

leoisl opened this issue Jul 17, 2023 · 0 comments

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@leoisl
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leoisl commented Jul 17, 2023

See Zam's comment at #335

Basically, we have several common default CLI args for compare, map and discover, see

https://github.com/rmcolq/pandora/blob/master/include/compare_main.h

https://github.com/rmcolq/pandora/blob/master/include/map_main.h

https://github.com/rmcolq/pandora/blob/master/include/denovo_discovery/discover_main.h

Would be better if there was a header file defining these default values so that we don't duplicate them
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