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Commands: build
Robyn Ffrancon edited this page Jun 11, 2018
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This command generates a Population Reference Graph (PRG) and other supporting data structures.
gramtools build --gram-directory ./gram --vcf ./vcf --reference ./reference --max-read-length 150
| parameter | description |
|---|---|
--gram-directory |
output directory for gramtools build files (created if missing) |
--vcf |
input variant call file detailing genetic variants |
--reference |
generic reference genome which compliments the VCF |
--max-read-length |
maximum read length used during the quasimap command |