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Robyn Ffrancon edited this page May 21, 2018 · 8 revisions

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gramtools build --gram-directory ./gram --vcf ./vcf --reference ./reference --max-read-length 150

parameter description
--gram-directory output directory for gramtools build files (created if missing)
--vcf input variant call file detailing genetic variants
--reference generic reference genome which compliments the VCF
--max-read-length maximum read length used during the quasimap command
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