From 98aa337a7b7d9b72c70ae976fe8b6299ed10ddaa Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Wed, 24 Apr 2024 16:34:07 +0000 Subject: [PATCH] Update documentation --- 010_api_reference.html | 15 +- 02_installation.html | 3 +- 06_examples.html | 3 +- 09_contribution.html | 3 +- _autosummary/brainbox.atlas.html | 4 +- _autosummary/brainbox.behavior.dlc.html | 4 +- _autosummary/brainbox.behavior.html | 4 +- ...rainbox.behavior.training.TRIALS_KEYS.html | 4 +- _autosummary/brainbox.behavior.training.html | 4 +- _autosummary/brainbox.behavior.wheel.html | 4 +- _autosummary/brainbox.core.html | 4 +- _autosummary/brainbox.ephys_plots.html | 110 +- _autosummary/brainbox.html | 4 +- _autosummary/brainbox.io.html | 4 +- _autosummary/brainbox.io.one.html | 62 +- _autosummary/brainbox.io.spikeglx.html | 4 +- _autosummary/brainbox.lfp.html | 4 +- .../brainbox.metrics.electrode_drift.html | 12 +- _autosummary/brainbox.metrics.html | 4 +- .../brainbox.metrics.single_units.html | 10 +- _autosummary/brainbox.plot.html | 12 +- _autosummary/brainbox.plot_base.html | 20 +- _autosummary/brainbox.population.cca.html | 28 +- _autosummary/brainbox.population.decode.html | 4 +- _autosummary/brainbox.population.html | 4 +- _autosummary/brainbox.processing.html | 8 +- _autosummary/brainbox.quality.html | 4 +- _autosummary/brainbox.quality.lfp_qc.html | 4 +- .../brainbox.quality.permutation_test.html | 4 +- _autosummary/brainbox.singlecell.html | 32 +- _autosummary/brainbox.spike_features.html | 4 +- _autosummary/brainbox.task.closed_loop.html | 4 +- _autosummary/brainbox.task.html | 4 +- _autosummary/brainbox.task.passive.html | 52 +- _autosummary/brainbox.task.trials.html | 8 +- _autosummary/brainbox.tests.html | 4 +- .../brainbox.tests.test_behavior.html | 4 +- _autosummary/brainbox.tests.test_cca.html | 4 +- _autosummary/brainbox.tests.test_io.html | 4 +- _autosummary/brainbox.tests.test_metrics.html | 8 +- _autosummary/brainbox.tests.test_passive.html | 4 +- .../brainbox.tests.test_plot_base.html | 4 +- .../brainbox.tests.test_population.html | 4 +- .../brainbox.tests.test_processing.html | 4 +- .../brainbox.tests.test_singlecell.html | 4 +- _autosummary/brainbox.tests.test_task.html | 4 +- _autosummary/brainbox.tests.test_trials.html | 4 +- _autosummary/brainbox.tests.test_video.html | 4 +- _autosummary/brainbox.video.html | 4 +- ...s.atlas.ALLEN_CCF_LANDMARKS_MLAPDV_UM.html | 4 +- ...atlas.PAXINOS_CCF_LANDMARKS_MLAPDV_UM.html | 4 +- .../iblatlas.atlas.S3_BUCKET_IBL.html | 4 +- _autosummary/iblatlas.atlas.html | 16 +- _autosummary/iblatlas.flatmaps.html | 10 +- _autosummary/iblatlas.genomics.agea.html | 8 +- _autosummary/iblatlas.genomics.html | 4 +- _autosummary/iblatlas.genomics.merfish.html | 6 +- _autosummary/iblatlas.html | 4 +- _autosummary/iblatlas.plots.html | 4 +- _autosummary/iblatlas.regions.html | 150 +-- _autosummary/ibllib.atlas.atlas.html | 44 +- _autosummary/ibllib.atlas.flatmaps.html | 4 +- _autosummary/ibllib.atlas.genes.html | 4 +- _autosummary/ibllib.atlas.html | 4 +- _autosummary/ibllib.atlas.plots.html | 4 +- _autosummary/ibllib.atlas.regions.html | 4 +- _autosummary/ibllib.ephys.ephysqc.html | 6 +- _autosummary/ibllib.ephys.html | 4 +- _autosummary/ibllib.ephys.spikes.html | 8 +- _autosummary/ibllib.ephys.sync_probes.html | 10 +- _autosummary/ibllib.exceptions.html | 4 +- _autosummary/ibllib.html | 4 +- _autosummary/ibllib.io.extractors.base.html | 4 +- .../ibllib.io.extractors.biased_trials.html | 14 +- .../ibllib.io.extractors.bpod_trials.html | 4 +- _autosummary/ibllib.io.extractors.camera.html | 4 +- ...ib.io.extractors.default_channel_maps.html | 4 +- ...ys_fpga.BPOD_FPGA_DRIFT_THRESHOLD_PPM.html | 4 +- ...bllib.io.extractors.ephys_fpga.CHMAPS.html | 4 +- ...ctors.ephys_fpga.SYNC_BATCH_SIZE_SECS.html | 4 +- ...extractors.ephys_fpga.WHEEL_RADIUS_CM.html | 4 +- ....io.extractors.ephys_fpga.WHEEL_TICKS.html | 4 +- .../ibllib.io.extractors.ephys_fpga.html | 6 +- .../ibllib.io.extractors.ephys_passive.html | 4 +- ...xtractors.fibrephotometry.V_THRESHOLD.html | 4 +- .../ibllib.io.extractors.fibrephotometry.html | 18 +- ...llib.io.extractors.habituation_trials.html | 4 +- _autosummary/ibllib.io.extractors.html | 4 +- .../ibllib.io.extractors.mesoscope.html | 4 +- .../ibllib.io.extractors.opto_trials.html | 4 +- ...ibllib.io.extractors.passive_plotting.html | 4 +- .../ibllib.io.extractors.signatures.html | 4 +- .../ibllib.io.extractors.training_audio.html | 4 +- .../ibllib.io.extractors.training_trials.html | 4 +- .../ibllib.io.extractors.training_wheel.html | 6 +- .../ibllib.io.extractors.video_motion.html | 18 +- .../ibllib.io.extractors.widefield.html | 4 +- _autosummary/ibllib.io.ffmpeg.html | 4 +- _autosummary/ibllib.io.flags.html | 4 +- _autosummary/ibllib.io.html | 4 +- _autosummary/ibllib.io.misc.html | 4 +- _autosummary/ibllib.io.npy_header.html | 4 +- _autosummary/ibllib.io.raw_daq_loaders.html | 4 +- _autosummary/ibllib.io.raw_data_loaders.html | 25 +- _autosummary/ibllib.io.session_params.html | 4 +- _autosummary/ibllib.io.video.html | 4 +- _autosummary/ibllib.misc.html | 4 +- _autosummary/ibllib.misc.misc.html | 4 +- _autosummary/ibllib.misc.qt.html | 4 +- _autosummary/ibllib.oneibl.data_handlers.html | 37 +- _autosummary/ibllib.oneibl.html | 4 +- _autosummary/ibllib.oneibl.patcher.html | 8 +- _autosummary/ibllib.oneibl.registration.html | 4 +- _autosummary/ibllib.oneibl.stream.html | 4 +- _autosummary/ibllib.pipes.audio_tasks.html | 4 +- _autosummary/ibllib.pipes.base_tasks.html | 4 +- _autosummary/ibllib.pipes.behavior_tasks.html | 4 +- .../ibllib.pipes.dynamic_pipeline.html | 19 +- .../ibllib.pipes.ephys_alignment.html | 4 +- .../ibllib.pipes.ephys_preprocessing.html | 6 +- _autosummary/ibllib.pipes.ephys_tasks.html | 4 +- _autosummary/ibllib.pipes.histology.html | 32 +- _autosummary/ibllib.pipes.html | 4 +- _autosummary/ibllib.pipes.local_server.html | 4 +- .../ibllib.pipes.mesoscope_tasks.html | 4 +- _autosummary/ibllib.pipes.misc.html | 26 +- .../ibllib.pipes.photometry_tasks.html | 4 +- _autosummary/ibllib.pipes.purge_rig_data.html | 4 +- _autosummary/ibllib.pipes.remote_server.html | 4 +- .../ibllib.pipes.scan_fix_passive_files.html | 4 +- _autosummary/ibllib.pipes.sync_tasks.html | 4 +- _autosummary/ibllib.pipes.tasks.html | 21 +- .../ibllib.pipes.training_preprocessing.html | 4 +- .../ibllib.pipes.training_status.html | 83 +- .../ibllib.pipes.transfer_rig_data.html | 4 +- _autosummary/ibllib.pipes.video_tasks.html | 80 +- .../ibllib.pipes.widefield_tasks.html | 4 +- _autosummary/ibllib.plots.figures.html | 45 +- _autosummary/ibllib.plots.html | 4 +- _autosummary/ibllib.plots.misc.html | 4 +- _autosummary/ibllib.plots.snapshot.html | 4 +- _autosummary/ibllib.qc.alignment_qc.html | 6 +- _autosummary/ibllib.qc.base.html | 108 +- _autosummary/ibllib.qc.camera.html | 165 +-- _autosummary/ibllib.qc.critical_reasons.html | 22 +- _autosummary/ibllib.qc.dlc.html | 4 +- _autosummary/ibllib.qc.html | 4 +- _autosummary/ibllib.qc.qcplots.html | 4 +- _autosummary/ibllib.qc.task_extractors.html | 4 +- _autosummary/ibllib.qc.task_metrics.html | 148 ++- .../ibllib.qc.task_qc_viewer.ViewEphysQC.html | 4 +- _autosummary/ibllib.qc.task_qc_viewer.html | 4 +- .../ibllib.qc.task_qc_viewer.task_qc.html | 22 +- _autosummary/ibllib.tests.extractors.html | 4 +- ...llib.tests.extractors.test_ephys_fpga.html | 10 +- ...b.tests.extractors.test_ephys_passive.html | 4 +- ...llib.tests.extractors.test_extractors.html | 4 +- ...tests.extractors.test_extractors_base.html | 4 +- _autosummary/ibllib.tests.fixtures.html | 4 +- _autosummary/ibllib.tests.fixtures.utils.html | 6 +- _autosummary/ibllib.tests.html | 4 +- _autosummary/ibllib.tests.qc.html | 4 +- .../ibllib.tests.qc.test_alignment_qc.html | 4 +- .../ibllib.tests.qc.test_base_qc.html | 10 +- .../ibllib.tests.qc.test_camera_qc.html | 4 +- ...ibllib.tests.qc.test_critical_reasons.html | 4 +- _autosummary/ibllib.tests.qc.test_dlc_qc.html | 4 +- .../ibllib.tests.qc.test_task_metrics.html | 36 +- ....tests.qc.test_task_qc_viewer.MOCK_QT.html | 4 +- .../ibllib.tests.qc.test_task_qc_viewer.html | 4 +- _autosummary/ibllib.tests.test_atlas.html | 4 +- .../ibllib.tests.test_base_tasks.html | 4 +- .../ibllib.tests.test_dynamic_pipeline.html | 4 +- _autosummary/ibllib.tests.test_ephys.html | 4 +- _autosummary/ibllib.tests.test_histology.html | 4 +- _autosummary/ibllib.tests.test_io.html | 10 +- _autosummary/ibllib.tests.test_mesoscope.html | 4 +- _autosummary/ibllib.tests.test_oneibl.html | 30 +- _autosummary/ibllib.tests.test_pipes.html | 10 +- _autosummary/ibllib.tests.test_plots.html | 4 +- _autosummary/ibllib.tests.test_tasks.html | 4 +- _autosummary/ibllib.tests.test_time.html | 4 +- _autosummary/ibllib.tests.test_widefield.html | 4 +- _autosummary/ibllib.time.html | 4 +- _autosummary/iblutil.html | 179 +++ _autosummary/iblutil.io.hashfile.html | 210 ++++ _autosummary/iblutil.io.html | 190 +++ _autosummary/iblutil.io.jsonable.html | 201 +++ _autosummary/iblutil.io.net.app.html | 717 +++++++++++ _autosummary/iblutil.io.net.base.html | 699 +++++++++++ _autosummary/iblutil.io.net.html | 184 +++ _autosummary/iblutil.io.params.html | 287 +++++ _autosummary/iblutil.io.parquet.html | 266 ++++ _autosummary/iblutil.numerical.html | 394 ++++++ _autosummary/iblutil.spacer.html | 290 +++++ _autosummary/iblutil.util.html | 374 ++++++ ...xternal_Working_with_ibllib_atlas_10_1.png | Bin 54038 -> 54038 bytes ...external_Working_with_ibllib_atlas_7_1.png | Bin 168026 -> 168026 bytes ..._atlas_circular_pyramidal_flatmap_10_1.png | Bin 136735 -> 136735 bytes ..._atlas_circular_pyramidal_flatmap_17_0.png | Bin 240779 -> 240779 bytes ..._atlas_circular_pyramidal_flatmap_18_0.png | Bin 175716 -> 175716 bytes ..._atlas_circular_pyramidal_flatmap_19_0.png | Bin 99375 -> 99375 bytes ..._atlas_circular_pyramidal_flatmap_20_0.png | Bin 204839 -> 204810 bytes ...l_atlas_circular_pyramidal_flatmap_5_2.png | Bin 93500 -> 93500 bytes ...l_atlas_circular_pyramidal_flatmap_7_1.png | Bin 132010 -> 132010 bytes ...ernal_atlas_dorsal_cortex_flatmap_13_0.png | Bin 60613 -> 60613 bytes ...ernal_atlas_dorsal_cortex_flatmap_14_0.png | Bin 75055 -> 75055 bytes ...ernal_atlas_dorsal_cortex_flatmap_15_0.png | Bin 70182 -> 70182 bytes ...ernal_atlas_dorsal_cortex_flatmap_16_0.png | Bin 63271 -> 63473 bytes ...ternal_atlas_dorsal_cortex_flatmap_5_1.png | Bin 34971 -> 34971 bytes ...ternal_atlas_dorsal_cortex_flatmap_6_1.png | Bin 36473 -> 36473 bytes ...ternal_atlas_genomics_load_merfish_1_0.png | Bin 501637 -> 501637 bytes .../notebooks_external_atlas_mapping_3_0.png | Bin 91562 -> 91562 bytes ...al_atlas_plotting_points_on_slice_11_0.png | Bin 37788 -> 37788 bytes ...al_atlas_plotting_points_on_slice_15_1.png | Bin 168624 -> 168624 bytes ...al_atlas_plotting_points_on_slice_16_0.png | Bin 57687 -> 57687 bytes ...al_atlas_plotting_points_on_slice_17_0.png | Bin 23343 -> 23343 bytes ...nal_atlas_plotting_points_on_slice_7_0.png | Bin 96271 -> 96271 bytes ...al_atlas_plotting_scalar_on_slice_12_0.png | Bin 174384 -> 174384 bytes ...al_atlas_plotting_scalar_on_slice_13_0.png | Bin 94630 -> 94630 bytes ...al_atlas_plotting_scalar_on_slice_14_0.png | Bin 112522 -> 113165 bytes ...al_atlas_plotting_scalar_on_slice_16_0.png | Bin 89380 -> 89380 bytes ...al_atlas_plotting_scalar_on_slice_17_0.png | Bin 99509 -> 99509 bytes ...al_atlas_plotting_scalar_on_slice_19_0.png | Bin 106533 -> 106625 bytes ...al_atlas_plotting_scalar_on_slice_21_1.png | Bin 75339 -> 75339 bytes ...ks_external_atlas_swanson_flatmap_13_3.png | Bin 107334 -> 107334 bytes ...ks_external_atlas_swanson_flatmap_13_4.png | Bin 107196 -> 107196 bytes ...ks_external_atlas_swanson_flatmap_15_2.png | Bin 107380 -> 107380 bytes ...ks_external_atlas_swanson_flatmap_17_2.png | Bin 107393 -> 107393 bytes ...ks_external_atlas_swanson_flatmap_19_2.png | Bin 108253 -> 108253 bytes ...ks_external_atlas_swanson_flatmap_23_1.png | Bin 124516 -> 124516 bytes ...ks_external_atlas_swanson_flatmap_25_1.png | Bin 191201 -> 194448 bytes ...ks_external_atlas_swanson_flatmap_27_2.png | Bin 167798 -> 167798 bytes ...oks_external_atlas_swanson_flatmap_3_1.png | Bin 165043 -> 165043 bytes ...l_atlas_working_with_ibllib_atlas_10_1.png | Bin 54038 -> 54038 bytes ...al_atlas_working_with_ibllib_atlas_7_1.png | Bin 168026 -> 168026 bytes ...tebooks_external_docs_wheel_moves_11_0.png | Bin 24030 -> 24030 bytes ...tebooks_external_docs_wheel_moves_14_0.png | Bin 36418 -> 36418 bytes ...tebooks_external_docs_wheel_moves_20_0.png | Bin 29772 -> 29772 bytes ...tebooks_external_docs_wheel_moves_23_0.png | Bin 17663 -> 19576 bytes ...tebooks_external_docs_wheel_moves_27_0.png | Bin 40067 -> 40067 bytes ...tebooks_external_docs_wheel_moves_29_0.png | Bin 38915 -> 38915 bytes ...tebooks_external_docs_wheel_moves_31_0.png | Bin 34026 -> 32514 bytes ...ternal_docs_wheel_screen_stimulus_28_1.png | Bin 0 -> 39962 bytes ...books_external_loading_ephys_data_17_0.png | Bin 121573 -> 121573 bytes ...s_external_loading_raw_ephys_data_18_1.png | Bin 243236 -> 243236 bytes ...ks_external_loading_raw_ephys_data_9_1.png | Bin 850014 -> 850014 bytes ...xternal_loading_spikesorting_data_22_1.png | Bin 718550 -> 718550 bytes ...ooks_external_loading_trials_data_18_0.png | Bin 42642 -> 42747 bytes ...books_external_loading_video_data_15_0.png | Bin 201128 -> 201128 bytes _modules/brainbox/atlas.html | 3 +- _modules/brainbox/behavior/dlc.html | 5 +- _modules/brainbox/behavior/training.html | 3 +- _modules/brainbox/behavior/wheel.html | 3 +- _modules/brainbox/core.html | 3 +- _modules/brainbox/ephys_plots.html | 3 +- _modules/brainbox/io/one.html | 49 +- _modules/brainbox/io/spikeglx.html | 3 +- _modules/brainbox/lfp.html | 3 +- .../brainbox/metrics/electrode_drift.html | 5 +- _modules/brainbox/metrics/single_units.html | 5 +- _modules/brainbox/plot.html | 3 +- _modules/brainbox/plot_base.html | 3 +- _modules/brainbox/population/cca.html | 3 +- _modules/brainbox/population/decode.html | 3 +- _modules/brainbox/processing.html | 3 +- .../brainbox/quality/permutation_test.html | 3 +- _modules/brainbox/singlecell.html | 3 +- _modules/brainbox/spike_features.html | 3 +- _modules/brainbox/task/closed_loop.html | 3 +- _modules/brainbox/task/passive.html | 3 +- _modules/brainbox/task/trials.html | 3 +- _modules/brainbox/tests/test_behavior.html | 3 +- _modules/brainbox/tests/test_cca.html | 3 +- _modules/brainbox/tests/test_io.html | 3 +- _modules/brainbox/tests/test_metrics.html | 3 +- _modules/brainbox/tests/test_passive.html | 3 +- _modules/brainbox/tests/test_plot_base.html | 3 +- _modules/brainbox/tests/test_population.html | 3 +- _modules/brainbox/tests/test_processing.html | 3 +- _modules/brainbox/tests/test_singlecell.html | 3 +- _modules/brainbox/tests/test_task.html | 3 +- _modules/brainbox/tests/test_trials.html | 3 +- _modules/brainbox/tests/test_video.html | 3 +- _modules/brainbox/video.html | 3 +- _modules/iblatlas/atlas.html | 3 +- _modules/iblatlas/flatmaps.html | 3 +- _modules/iblatlas/genomics/agea.html | 3 +- _modules/iblatlas/genomics/merfish.html | 3 +- _modules/iblatlas/plots.html | 3 +- _modules/iblatlas/regions.html | 3 +- _modules/ibllib/atlas/atlas.html | 3 +- _modules/ibllib/ephys/ephysqc.html | 5 +- _modules/ibllib/ephys/spikes.html | 5 +- _modules/ibllib/ephys/sync_probes.html | 7 +- _modules/ibllib/exceptions.html | 3 +- _modules/ibllib/io/extractors/base.html | 6 +- .../ibllib/io/extractors/biased_trials.html | 42 +- .../ibllib/io/extractors/bpod_trials.html | 3 +- _modules/ibllib/io/extractors/camera.html | 5 +- .../io/extractors/default_channel_maps.html | 3 +- _modules/ibllib/io/extractors/ephys_fpga.html | 47 +- .../ibllib/io/extractors/ephys_passive.html | 3 +- .../ibllib/io/extractors/fibrephotometry.html | 5 +- .../io/extractors/habituation_trials.html | 29 +- _modules/ibllib/io/extractors/mesoscope.html | 5 +- .../ibllib/io/extractors/opto_trials.html | 3 +- .../io/extractors/passive_plotting.html | 3 +- _modules/ibllib/io/extractors/signatures.html | 3 +- .../ibllib/io/extractors/training_audio.html | 7 +- .../ibllib/io/extractors/training_trials.html | 3 +- .../ibllib/io/extractors/training_wheel.html | 5 +- .../ibllib/io/extractors/video_motion.html | 23 +- _modules/ibllib/io/extractors/widefield.html | 16 +- _modules/ibllib/io/ffmpeg.html | 3 +- _modules/ibllib/io/flags.html | 3 +- _modules/ibllib/io/misc.html | 3 +- _modules/ibllib/io/npy_header.html | 3 +- _modules/ibllib/io/raw_daq_loaders.html | 11 +- _modules/ibllib/io/raw_data_loaders.html | 20 +- _modules/ibllib/io/session_params.html | 7 +- _modules/ibllib/io/video.html | 3 +- _modules/ibllib/misc/misc.html | 3 +- _modules/ibllib/misc/qt.html | 3 +- _modules/ibllib/oneibl/data_handlers.html | 80 +- _modules/ibllib/oneibl/patcher.html | 11 +- _modules/ibllib/oneibl/registration.html | 53 +- _modules/ibllib/oneibl/stream.html | 3 +- _modules/ibllib/pipes.html | 3 +- _modules/ibllib/pipes/audio_tasks.html | 3 +- _modules/ibllib/pipes/base_tasks.html | 3 +- _modules/ibllib/pipes/behavior_tasks.html | 41 +- _modules/ibllib/pipes/dynamic_pipeline.html | 30 +- _modules/ibllib/pipes/ephys_alignment.html | 3 +- .../ibllib/pipes/ephys_preprocessing.html | 5 +- _modules/ibllib/pipes/ephys_tasks.html | 5 +- _modules/ibllib/pipes/histology.html | 46 +- _modules/ibllib/pipes/local_server.html | 3 +- _modules/ibllib/pipes/mesoscope_tasks.html | 5 +- _modules/ibllib/pipes/misc.html | 64 +- _modules/ibllib/pipes/photometry_tasks.html | 3 +- _modules/ibllib/pipes/purge_rig_data.html | 3 +- _modules/ibllib/pipes/remote_server.html | 3 +- .../ibllib/pipes/scan_fix_passive_files.html | 3 +- _modules/ibllib/pipes/sync_tasks.html | 3 +- _modules/ibllib/pipes/tasks.html | 35 +- .../ibllib/pipes/training_preprocessing.html | 3 +- _modules/ibllib/pipes/training_status.html | 139 ++- _modules/ibllib/pipes/transfer_rig_data.html | 3 +- _modules/ibllib/pipes/video_tasks.html | 126 +- _modules/ibllib/pipes/widefield_tasks.html | 9 +- _modules/ibllib/plots/figures.html | 74 +- _modules/ibllib/plots/misc.html | 5 +- _modules/ibllib/plots/snapshot.html | 3 +- _modules/ibllib/qc/alignment_qc.html | 13 +- _modules/ibllib/qc/base.html | 159 +-- _modules/ibllib/qc/camera.html | 267 ++-- _modules/ibllib/qc/critical_reasons.html | 3 +- _modules/ibllib/qc/dlc.html | 15 +- _modules/ibllib/qc/qcplots.html | 3 +- _modules/ibllib/qc/task_extractors.html | 3 +- _modules/ibllib/qc/task_metrics.html | 296 ++++- .../ibllib/qc/task_qc_viewer/ViewEphysQC.html | 3 +- .../ibllib/qc/task_qc_viewer/task_qc.html | 21 +- .../tests/extractors/test_ephys_fpga.html | 23 +- .../tests/extractors/test_ephys_passive.html | 3 +- .../tests/extractors/test_extractors.html | 3 +- .../extractors/test_extractors_base.html | 3 +- _modules/ibllib/tests/fixtures/utils.html | 5 +- .../ibllib/tests/qc/test_alignment_qc.html | 29 +- _modules/ibllib/tests/qc/test_base_qc.html | 35 +- _modules/ibllib/tests/qc/test_camera_qc.html | 84 +- .../tests/qc/test_critical_reasons.html | 3 +- _modules/ibllib/tests/qc/test_dlc_qc.html | 3 +- .../ibllib/tests/qc/test_task_metrics.html | 389 ++++-- .../ibllib/tests/qc/test_task_qc_viewer.html | 3 +- _modules/ibllib/tests/test_atlas.html | 3 +- _modules/ibllib/tests/test_base_tasks.html | 3 +- .../ibllib/tests/test_dynamic_pipeline.html | 3 +- _modules/ibllib/tests/test_ephys.html | 5 +- _modules/ibllib/tests/test_histology.html | 3 +- _modules/ibllib/tests/test_io.html | 23 +- _modules/ibllib/tests/test_mesoscope.html | 3 +- _modules/ibllib/tests/test_oneibl.html | 105 +- _modules/ibllib/tests/test_pipes.html | 56 +- _modules/ibllib/tests/test_plots.html | 3 +- _modules/ibllib/tests/test_tasks.html | 7 +- _modules/ibllib/tests/test_time.html | 3 +- _modules/ibllib/tests/test_widefield.html | 3 +- _modules/ibllib/time.html | 3 +- _modules/iblutil/io/hashfile.html | 203 +++ _modules/iblutil/io/jsonable.html | 174 +++ _modules/iblutil/io/net/app.html | 1091 +++++++++++++++++ _modules/iblutil/io/net/base.html | 759 ++++++++++++ _modules/iblutil/io/params.html | 296 +++++ _modules/iblutil/io/parquet.html | 255 ++++ _modules/iblutil/numerical.html | 520 ++++++++ _modules/iblutil/spacer.html | 357 ++++++ _modules/iblutil/util.html | 424 +++++++ _modules/index.html | 12 +- _static/basic.css | 2 +- _static/doctools.js | 2 +- _static/language_data.js | 4 +- _static/searchtools.js | 165 ++- atlas_examples.html | 5 +- dj_docs/dj_credentials.html | 3 +- dj_docs/dj_introduction.html | 3 +- dj_docs/dj_public.html | 3 +- docs_external/alf_intro.html | 3 +- docs_external/ibl_viewer.html | 3 +- genindex.html | 594 +++++++-- index.html | 5 +- loading_examples.html | 5 +- .../Working with ibllib atlas.html | 3 +- .../Working with ibllib atlas.ipynb | 98 +- .../atlas_circular_pyramidal_flatmap.html | 7 +- .../atlas_circular_pyramidal_flatmap.ipynb | 98 +- .../atlas_dorsal_cortex_flatmap.html | 3 +- .../atlas_dorsal_cortex_flatmap.ipynb | 82 +- .../atlas_genomics_load_agea.html | 3 +- .../atlas_genomics_load_merfish.html | 19 +- .../atlas_genomics_load_merfish.ipynb | 18 +- notebooks_external/atlas_mapping.html | 14 +- notebooks_external/atlas_mapping.ipynb | 218 ++-- .../atlas_plotting_points_on_slice.html | 14 +- .../atlas_plotting_points_on_slice.ipynb | 66 +- .../atlas_plotting_scalar_on_slice.html | 5 +- .../atlas_plotting_scalar_on_slice.ipynb | 98 +- notebooks_external/atlas_swanson_flatmap.html | 15 +- .../atlas_swanson_flatmap.ipynb | 106 +- .../atlas_working_with_ibllib_atlas.html | 3 +- .../atlas_working_with_ibllib_atlas.ipynb | 282 ++--- notebooks_external/data_download.html | 184 +-- notebooks_external/data_download.ipynb | 190 ++- notebooks_external/data_release_behavior.html | 3 +- .../data_release_behavior.ipynb | 2 +- .../data_release_brainwidemap.html | 3 +- .../data_release_brainwidemap.ipynb | 2 +- .../data_release_repro_ephys.html | 3 +- .../data_release_repro_ephys.ipynb | 2 +- .../data_release_spikesorting_benchmarks.html | 3 +- ...data_release_spikesorting_benchmarks.ipynb | 2 +- notebooks_external/data_structure.html | 3 +- notebooks_external/data_structure.ipynb | 2 +- notebooks_external/docs_wheel_moves.html | 28 +- notebooks_external/docs_wheel_moves.ipynb | 138 +-- .../docs_wheel_screen_stimulus.html | 373 ++++++ .../docs_wheel_screen_stimulus.ipynb | 485 ++++++++ notebooks_external/loading_ephys_data.html | 3 +- notebooks_external/loading_ephys_data.ipynb | 50 +- .../loading_multi_photon_imaging_data.html | 3 +- .../loading_multi_photon_imaging_data.ipynb | 2 +- notebooks_external/loading_passive_data.html | 13 +- notebooks_external/loading_passive_data.ipynb | 57 +- .../loading_raw_audio_data.html | 3 +- .../loading_raw_audio_data.ipynb | 10 +- .../loading_raw_ephys_data.html | 351 +----- .../loading_raw_ephys_data.ipynb | 73 +- .../loading_raw_mesoscope_data.html | 3 +- .../loading_raw_mesoscope_data.ipynb | 10 +- .../loading_raw_video_data.html | 3 +- .../loading_raw_video_data.ipynb | 50 +- .../loading_spike_waveforms.html | 3 +- .../loading_spike_waveforms.ipynb | 34 +- .../loading_spikesorting_data.html | 14 +- .../loading_spikesorting_data.ipynb | 74 +- notebooks_external/loading_trials_data.html | 12 +- notebooks_external/loading_trials_data.ipynb | 58 +- notebooks_external/loading_video_data.html | 14 +- notebooks_external/loading_video_data.ipynb | 50 +- notebooks_external/loading_wheel_data.html | 3 +- notebooks_external/loading_wheel_data.ipynb | 34 +- notebooks_external/one_quickstart.html | 30 +- notebooks_external/one_quickstart.ipynb | 74 +- objects.inv | Bin 71084 -> 74512 bytes public_docs/data_release_pilot.html | 3 +- public_docs/information_contact.html | 3 +- public_docs/public_introduction.html | 3 +- py-modindex.html | 64 +- search.html | 3 +- searchindex.js | 2 +- 481 files changed, 14068 insertions(+), 3513 deletions(-) create mode 100644 _autosummary/iblutil.html create mode 100644 _autosummary/iblutil.io.hashfile.html create mode 100644 _autosummary/iblutil.io.html create mode 100644 _autosummary/iblutil.io.jsonable.html create mode 100644 _autosummary/iblutil.io.net.app.html create mode 100644 _autosummary/iblutil.io.net.base.html create mode 100644 _autosummary/iblutil.io.net.html create mode 100644 _autosummary/iblutil.io.params.html create mode 100644 _autosummary/iblutil.io.parquet.html create mode 100644 _autosummary/iblutil.numerical.html create mode 100644 _autosummary/iblutil.spacer.html create mode 100644 _autosummary/iblutil.util.html create mode 100644 _images/notebooks_external_docs_wheel_screen_stimulus_28_1.png create mode 100644 _modules/iblutil/io/hashfile.html create mode 100644 _modules/iblutil/io/jsonable.html create mode 100644 _modules/iblutil/io/net/app.html create mode 100644 _modules/iblutil/io/net/base.html create mode 100644 _modules/iblutil/io/params.html create mode 100644 _modules/iblutil/io/parquet.html create mode 100644 _modules/iblutil/numerical.html create mode 100644 _modules/iblutil/spacer.html create mode 100644 _modules/iblutil/util.html create mode 100644 notebooks_external/docs_wheel_screen_stimulus.html create mode 100644 notebooks_external/docs_wheel_screen_stimulus.ipynb diff --git a/010_api_reference.html b/010_api_reference.html index 3b824991..3e699204 100644 --- a/010_api_reference.html +++ b/010_api_reference.html @@ -18,7 +18,7 @@ - + @@ -27,7 +27,7 @@ - + @@ -80,6 +80,7 @@

API Reference

  • Index
  • @@ -141,13 +143,20 @@

    API Reference + +

    iblutil

    +

    + + +