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snprank.h
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snprank.h
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/*
* =====================================================================================
*
* Filename: snprank.h
*
* Description: SNPrank - single nucleotide polymorphism (SNP) ranking algorithm
*
* Created: 08/11/2011
*
* Author: Nick Davis, [email protected]
*
* =====================================================================================
*/
#ifndef __SNPRANK_H__
#define __SNPRANK_H__
#include <vector>
#include <string>
#include "armadillo"
using namespace std;
using namespace arma;
class SNPrank {
public:
SNPrank();
SNPrank(string file);
~SNPrank();
void snprank(vector<string> names, mat G, double gamma, string outFile);
vector<string> getHeader();
void setHeader(vector<string> hdr);
mat getData();
void setData(mat dat);
private:
void readFile(string filename);
vector<string> header;
mat data;
};
#endif