From 3a051900c712c19cfcf5bd250a736efba49e07a7 Mon Sep 17 00:00:00 2001 From: Pawel Rucki <12943682+pawelru@users.noreply.github.com> Date: Tue, 27 Aug 2024 16:24:31 +0200 Subject: [PATCH 1/6] Update DESCRIPTION (#1288) to be in sync with whats in Imports Signed-off-by: Pawel Rucki <12943682+pawelru@users.noreply.github.com> --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index b146f386b2..b03962efa8 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -71,7 +71,7 @@ Config/Needs/verdepcheck: insightsengineering/rtables, tidymodels/broom, cran/car, mllg/checkmate, wilkelab/cowplot, tidyverse/dplyr, rvlenth/emmeans, tidyverse/forcats, insightsengineering/formatters, tidyverse/ggplot2, r-lib/gtable, r-lib/lifecycle, tidyverse/magrittr, - GeoBosh/Rdpack, r-lib/rlang, r-lib/scales, tidyverse/tibble, + GeoBosh/Rdpack, r-lib/rlang, r-lib/scales, therneau/survival, tidyverse/tibble, tidyverse/tidyr, yihui/knitr, deepayan/lattice, tidyverse/lubridate, insightsengineering/nestcolor, rstudio/rmarkdown, tidyverse/stringr, r-lib/svglite, r-lib/testthat, r-lib/withr From bf04d81d297c970fefd6a33c1896dca1f82a7e45 Mon Sep 17 00:00:00 2001 From: pawelru Date: Tue, 27 Aug 2024 14:25:47 +0000 Subject: [PATCH 2/6] [skip actions] Bump version to 0.9.5.9014 --- DESCRIPTION | 12 ++++++------ NEWS.md | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index b03962efa8..6968c8d22a 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: tern Title: Create Common TLGs Used in Clinical Trials -Version: 0.9.5.9013 -Date: 2024-08-12 +Version: 0.9.5.9014 +Date: 2024-08-27 Authors@R: c( person("Joe", "Zhu", , "joe.zhu@roche.com", role = c("aut", "cre")), person("Daniel", "Sabanés Bové", , "daniel.sabanes_bove@roche.com", role = "aut"), @@ -71,10 +71,10 @@ Config/Needs/verdepcheck: insightsengineering/rtables, tidymodels/broom, cran/car, mllg/checkmate, wilkelab/cowplot, tidyverse/dplyr, rvlenth/emmeans, tidyverse/forcats, insightsengineering/formatters, tidyverse/ggplot2, r-lib/gtable, r-lib/lifecycle, tidyverse/magrittr, - GeoBosh/Rdpack, r-lib/rlang, r-lib/scales, therneau/survival, tidyverse/tibble, - tidyverse/tidyr, yihui/knitr, deepayan/lattice, tidyverse/lubridate, - insightsengineering/nestcolor, rstudio/rmarkdown, tidyverse/stringr, - r-lib/svglite, r-lib/testthat, r-lib/withr + GeoBosh/Rdpack, r-lib/rlang, r-lib/scales, therneau/survival, + tidyverse/tibble, tidyverse/tidyr, yihui/knitr, deepayan/lattice, + tidyverse/lubridate, insightsengineering/nestcolor, rstudio/rmarkdown, + tidyverse/stringr, r-lib/svglite, r-lib/testthat, r-lib/withr Config/Needs/website: insightsengineering/nesttemplate Config/testthat/edition: 3 Encoding: UTF-8 diff --git a/NEWS.md b/NEWS.md index c13a2e7afd..7ff395a42e 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# tern 0.9.5.9013 +# tern 0.9.5.9014 ### Enhancements * Added `errorbar_width` and `linetype` parameters to `g_lineplot`. * Reworking of `summarize_glm_count()` documentation and all its associated functions to better describe the results and the functions' purpose. From a346236fc4c95dddb41cad41835c53edb8d342a3 Mon Sep 17 00:00:00 2001 From: Joe Zhu Date: Wed, 28 Aug 2024 16:29:15 +0800 Subject: [PATCH 3/6] Update DESCRIPTION emmeans to 1.10.4 (#1284) close #1285 Signed-off-by: Joe Zhu --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 6968c8d22a..a7c62b0693 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -32,7 +32,7 @@ Imports: checkmate (>= 2.1.0), cowplot (>= 1.0.0), dplyr (>= 1.0.0), - emmeans (>= 1.8.0), + emmeans (>= 1.10.4), forcats (>= 1.0.0), formatters (>= 0.5.8), ggplot2 (>= 3.5.0), From 70d02987280c39355852a9d145f4cf9693c01e14 Mon Sep 17 00:00:00 2001 From: shajoezhu Date: Wed, 28 Aug 2024 08:30:28 +0000 Subject: [PATCH 4/6] [skip actions] Bump version to 0.9.5.9015 --- DESCRIPTION | 4 ++-- NEWS.md | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index a7c62b0693..791469634f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: tern Title: Create Common TLGs Used in Clinical Trials -Version: 0.9.5.9014 -Date: 2024-08-27 +Version: 0.9.5.9015 +Date: 2024-08-28 Authors@R: c( person("Joe", "Zhu", , "joe.zhu@roche.com", role = c("aut", "cre")), person("Daniel", "Sabanés Bové", , "daniel.sabanes_bove@roche.com", role = "aut"), diff --git a/NEWS.md b/NEWS.md index 7ff395a42e..a65dbc46bf 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# tern 0.9.5.9014 +# tern 0.9.5.9015 ### Enhancements * Added `errorbar_width` and `linetype` parameters to `g_lineplot`. * Reworking of `summarize_glm_count()` documentation and all its associated functions to better describe the results and the functions' purpose. From dba2aab2d639bb1c6cdef77052d563965e135e91 Mon Sep 17 00:00:00 2001 From: Pawel Rucki <12943682+pawelru@users.noreply.github.com> Date: Wed, 28 Aug 2024 16:29:22 +0200 Subject: [PATCH 5/6] update readme (#1290) - use `pak` for install instructions - remove section about PAT as unrelated - add reference to the intro article --- README.md | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 174e9183b3..0dae397068 100644 --- a/README.md +++ b/README.md @@ -62,11 +62,13 @@ install.packages("tern") or you can install the latest development version directly from GitHub by running the following: ```r -if (!require("remotes")) install.packages("remotes") -remotes::install_github("insightsengineering/tern") +# install.packages("pak") +pak::pak("insightsengineering/tern") ``` -Note that it is recommended you [create and use a `GITHUB_PAT`](https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/creating-a-personal-access-token) if installing from GitHub. +## Usage + +To understand how to use this package, please refer to the [Introduction to `tern`](https://insightsengineering.github.io/tern/latest-tag/articles/tern.html) article, which provides multiple examples of code implementation. See package vignettes `browseVignettes(package = "tern")` for usage of this package. From 66bb8f8d2ec1457f809516a0f1d7cfab71b4c60f Mon Sep 17 00:00:00 2001 From: pawelru Date: Wed, 28 Aug 2024 14:30:38 +0000 Subject: [PATCH 6/6] [skip actions] Bump version to 0.9.5.9016 --- DESCRIPTION | 2 +- NEWS.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 791469634f..a26c60d196 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: tern Title: Create Common TLGs Used in Clinical Trials -Version: 0.9.5.9015 +Version: 0.9.5.9016 Date: 2024-08-28 Authors@R: c( person("Joe", "Zhu", , "joe.zhu@roche.com", role = c("aut", "cre")), diff --git a/NEWS.md b/NEWS.md index a65dbc46bf..c7f82ba72a 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# tern 0.9.5.9015 +# tern 0.9.5.9016 ### Enhancements * Added `errorbar_width` and `linetype` parameters to `g_lineplot`. * Reworking of `summarize_glm_count()` documentation and all its associated functions to better describe the results and the functions' purpose.