From 0f5c475fbb8a1a045b0a6cc76359b0bb5ae49dfc Mon Sep 17 00:00:00 2001
From: m7pr <m7pr@users.noreply.github.com>
Date: Tue, 8 Oct 2024 13:54:02 +0000
Subject: [PATCH] [actions skip] Built site for
 teal.osprey@44e11472dff25934f146fca44491901cda60f028

---
 main/404.html                                     | 9 +++++++++
 main/CODE_OF_CONDUCT.html                         | 9 +++++++++
 main/CONTRIBUTING.html                            | 9 +++++++++
 main/LICENSE-text.html                            | 9 +++++++++
 main/SECURITY.html                                | 9 +++++++++
 main/authors.html                                 | 9 +++++++++
 main/index.html                                   | 9 +++++++++
 main/news/index.html                              | 9 +++++++++
 main/reference/argument_convention.html           | 9 +++++++++
 main/reference/as_numeric_from_comma_sep_str.html | 9 +++++++++
 main/reference/get_choices.html                   | 9 +++++++++
 main/reference/include_css_files.html             | 9 +++++++++
 main/reference/index.html                         | 9 +++++++++
 main/reference/label_aevar.html                   | 9 +++++++++
 main/reference/name_ci.html                       | 9 +++++++++
 main/reference/plot_decorate_output.html          | 9 +++++++++
 main/reference/quick_filter.html                  | 9 +++++++++
 main/reference/shared_params.html                 | 9 +++++++++
 main/reference/srv_g_decorate.html                | 9 +++++++++
 main/reference/teal.osprey-package.html           | 9 +++++++++
 main/reference/tm_g_ae_oview.html                 | 9 +++++++++
 main/reference/tm_g_ae_sub.html                   | 9 +++++++++
 main/reference/tm_g_butterfly.html                | 9 +++++++++
 main/reference/tm_g_events_term_id.html           | 9 +++++++++
 main/reference/tm_g_heat_bygrade.html             | 9 +++++++++
 main/reference/tm_g_patient_profile.html          | 9 +++++++++
 main/reference/tm_g_spiderplot.html               | 9 +++++++++
 main/reference/tm_g_swimlane.html                 | 9 +++++++++
 main/reference/tm_g_waterfall.html                | 9 +++++++++
 main/reference/ui_g_decorate.html                 | 9 +++++++++
 main/search.json                                  | 2 +-
 31 files changed, 271 insertions(+), 1 deletion(-)

diff --git a/main/404.html b/main/404.html
index fb601c38..a674a319 100644
--- a/main/404.html
+++ b/main/404.html
@@ -34,6 +34,15 @@
 <li class="nav-item"><a class="nav-link" href="https://insightsengineering.github.io/teal.osprey/reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="https://insightsengineering.github.io/teal.osprey/news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports">
 <li><a class="dropdown-item" href="https://insightsengineering.github.io/teal.osprey/coverage-report/">Coverage report</a></li>
diff --git a/main/CODE_OF_CONDUCT.html b/main/CODE_OF_CONDUCT.html
index 03f6eff1..3bed1b3e 100644
--- a/main/CODE_OF_CONDUCT.html
+++ b/main/CODE_OF_CONDUCT.html
@@ -18,6 +18,15 @@
       <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="unit-test-report/">Unit test report</a></li>
diff --git a/main/CONTRIBUTING.html b/main/CONTRIBUTING.html
index 98b33629..4ff3c81b 100644
--- a/main/CONTRIBUTING.html
+++ b/main/CONTRIBUTING.html
@@ -18,6 +18,15 @@
       <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="unit-test-report/">Unit test report</a></li>
diff --git a/main/LICENSE-text.html b/main/LICENSE-text.html
index 5ba0935f..114bd023 100644
--- a/main/LICENSE-text.html
+++ b/main/LICENSE-text.html
@@ -18,6 +18,15 @@
       <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="unit-test-report/">Unit test report</a></li>
diff --git a/main/SECURITY.html b/main/SECURITY.html
index 1ac7d1fe..e91aaff9 100644
--- a/main/SECURITY.html
+++ b/main/SECURITY.html
@@ -18,6 +18,15 @@
       <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="unit-test-report/">Unit test report</a></li>
diff --git a/main/authors.html b/main/authors.html
index 5b2be239..3db607ff 100644
--- a/main/authors.html
+++ b/main/authors.html
@@ -18,6 +18,15 @@
       <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="unit-test-report/">Unit test report</a></li>
diff --git a/main/index.html b/main/index.html
index 23e74cd1..3c81014c 100644
--- a/main/index.html
+++ b/main/index.html
@@ -36,6 +36,15 @@
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports">
 <li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
diff --git a/main/news/index.html b/main/news/index.html
index 509e00f1..e8c50983 100644
--- a/main/news/index.html
+++ b/main/news/index.html
@@ -18,6 +18,15 @@
       <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="active nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/argument_convention.html b/main/reference/argument_convention.html
index e65cb18d..0fca3aea 100644
--- a/main/reference/argument_convention.html
+++ b/main/reference/argument_convention.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/as_numeric_from_comma_sep_str.html b/main/reference/as_numeric_from_comma_sep_str.html
index 2457abc6..00c26a44 100644
--- a/main/reference/as_numeric_from_comma_sep_str.html
+++ b/main/reference/as_numeric_from_comma_sep_str.html
@@ -26,6 +26,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/get_choices.html b/main/reference/get_choices.html
index 9e1f9204..d557f55d 100644
--- a/main/reference/get_choices.html
+++ b/main/reference/get_choices.html
@@ -26,6 +26,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/include_css_files.html b/main/reference/include_css_files.html
index 4d2d6508..8223ebf8 100644
--- a/main/reference/include_css_files.html
+++ b/main/reference/include_css_files.html
@@ -22,6 +22,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/index.html b/main/reference/index.html
index d5e402e6..5bd60f18 100644
--- a/main/reference/index.html
+++ b/main/reference/index.html
@@ -18,6 +18,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/label_aevar.html b/main/reference/label_aevar.html
index 7160a95b..9cad10d8 100644
--- a/main/reference/label_aevar.html
+++ b/main/reference/label_aevar.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/name_ci.html b/main/reference/name_ci.html
index 396edd1f..9423c377 100644
--- a/main/reference/name_ci.html
+++ b/main/reference/name_ci.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/plot_decorate_output.html b/main/reference/plot_decorate_output.html
index 72aac69f..5f6827e5 100644
--- a/main/reference/plot_decorate_output.html
+++ b/main/reference/plot_decorate_output.html
@@ -18,6 +18,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/quick_filter.html b/main/reference/quick_filter.html
index 7dd54a1e..417fcc1f 100644
--- a/main/reference/quick_filter.html
+++ b/main/reference/quick_filter.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/shared_params.html b/main/reference/shared_params.html
index cda6aa05..15f8bbf0 100644
--- a/main/reference/shared_params.html
+++ b/main/reference/shared_params.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/srv_g_decorate.html b/main/reference/srv_g_decorate.html
index 81b9ea2d..bb4b74d3 100644
--- a/main/reference/srv_g_decorate.html
+++ b/main/reference/srv_g_decorate.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/teal.osprey-package.html b/main/reference/teal.osprey-package.html
index 98b9a1b4..664bf665 100644
--- a/main/reference/teal.osprey-package.html
+++ b/main/reference/teal.osprey-package.html
@@ -22,6 +22,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_ae_oview.html b/main/reference/tm_g_ae_oview.html
index 80fc7602..407c66b2 100644
--- a/main/reference/tm_g_ae_oview.html
+++ b/main/reference/tm_g_ae_oview.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_ae_sub.html b/main/reference/tm_g_ae_sub.html
index 19ebb322..8eb9cfb7 100644
--- a/main/reference/tm_g_ae_sub.html
+++ b/main/reference/tm_g_ae_sub.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_butterfly.html b/main/reference/tm_g_butterfly.html
index 6d5181ea..2b97a481 100644
--- a/main/reference/tm_g_butterfly.html
+++ b/main/reference/tm_g_butterfly.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_events_term_id.html b/main/reference/tm_g_events_term_id.html
index 62e79959..f271d7cb 100644
--- a/main/reference/tm_g_events_term_id.html
+++ b/main/reference/tm_g_events_term_id.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_heat_bygrade.html b/main/reference/tm_g_heat_bygrade.html
index 10541d54..62a2b9db 100644
--- a/main/reference/tm_g_heat_bygrade.html
+++ b/main/reference/tm_g_heat_bygrade.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_patient_profile.html b/main/reference/tm_g_patient_profile.html
index 7e9ca67e..ad763d8e 100644
--- a/main/reference/tm_g_patient_profile.html
+++ b/main/reference/tm_g_patient_profile.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_spiderplot.html b/main/reference/tm_g_spiderplot.html
index a3d8000b..127a2bae 100644
--- a/main/reference/tm_g_spiderplot.html
+++ b/main/reference/tm_g_spiderplot.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_swimlane.html b/main/reference/tm_g_swimlane.html
index 102f7084..92b6ac1a 100644
--- a/main/reference/tm_g_swimlane.html
+++ b/main/reference/tm_g_swimlane.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/tm_g_waterfall.html b/main/reference/tm_g_waterfall.html
index 5884c865..8a4961e1 100644
--- a/main/reference/tm_g_waterfall.html
+++ b/main/reference/tm_g_waterfall.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/reference/ui_g_decorate.html b/main/reference/ui_g_decorate.html
index 7796f0e5..da46ef6e 100644
--- a/main/reference/ui_g_decorate.html
+++ b/main/reference/ui_g_decorate.html
@@ -20,6 +20,15 @@
       <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
+<!-- start dropdown for versions --> <li class="nav-item dropdown">
+        <a href="#" class="nav-link dropdown-toggle"
+          data-bs-toggle="dropdown" role="button"
+          aria-expanded="false" aria-haspopup="true"
+          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.16">v0.1.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.osprey/v0.1.15">v0.1.15</a> </div></li>
+<!-- end dropdown for versions -->
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
   <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="../coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="../unit-test-report/">Unit test report</a></li>
diff --git a/main/search.json b/main/search.json
index cbf89e44..9bf60445 100644
--- a/main/search.json
+++ b/main/search.json
@@ -1 +1 @@
-[{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement [INSERT CONTACT METHOD]. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":null,"dir":"","previous_headings":"","what":"Contribution Guidelines","title":"Contribution Guidelines","text":"🙏 Thank taking time contribute! input deeply valued, whether issue, pull request, even feedback, regardless size, content scope.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"table-of-contents","dir":"","previous_headings":"","what":"Table of contents","title":"Contribution Guidelines","text":"👶 Getting started 📔 Code Conduct 🗃 License 📜 Issues 🚩 Pull requests 💻 Coding guidelines 🏆 Recognition model ❓ Questions","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"getting-started","dir":"","previous_headings":"","what":"Getting started","title":"Contribution Guidelines","text":"Please refer project documentation brief introduction. Please also see articles within project documentation additional information.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Contribution Guidelines","text":"Code Conduct governs project. Participants contributors expected follow rules outlined therein.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"license","dir":"","previous_headings":"","what":"License","title":"Contribution Guidelines","text":"contributions covered project’s license.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"issues","dir":"","previous_headings":"","what":"Issues","title":"Contribution Guidelines","text":"use GitHub track issues, feature requests, bugs. submitting new issue, please check issue already reported. issue already exists, please upvote existing issue 👍. new feature requests, please elaborate context benefit feature users, developers, relevant personas.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"github-flow","dir":"","previous_headings":"Pull requests","what":"GitHub Flow","title":"Contribution Guidelines","text":"repository uses GitHub Flow model collaboration. submit pull request: Create branch Please see branch naming convention . don’t write access repository, please fork . Make changes Make sure code passes checks imposed GitHub Actions well documented well tested unit tests sufficiently covering changes introduced Create pull request (PR) pull request description, please link relevant issue (), provide detailed description change, include assumptions. Address review comments, Post approval Merge PR write access. Otherwise, reviewer merge PR behalf. Pat back Congratulations! 🎉 now official contributor project! grateful contribution.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"branch-naming-convention","dir":"","previous_headings":"Pull requests","what":"Branch naming convention","title":"Contribution Guidelines","text":"Suppose changes related current issue current project; please name branch follows: <issue_id>_<short_description>. Please use underscore (_) delimiter word separation. example, 420_fix_ui_bug suitable branch name change resolving UI-related bug reported issue number 420 current project. change affects multiple repositories, please name branches follows: <issue_id>_<issue_repo>_<short description>. example, 69_awesomeproject_fix_spelling_error reference issue 69 reported project awesomeproject aims resolve one spelling errors multiple (likely related) repositories.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"monorepo-and-stageddependencies","dir":"","previous_headings":"Pull requests","what":"monorepo and staged.dependencies","title":"Contribution Guidelines","text":"Sometimes might need change upstream dependent package(s) able submit meaningful change. using staged.dependencies functionality simulate monorepo behavior. dependency configuration already specified project’s staged_dependencies.yaml file. need name feature branches appropriately. exception branch naming convention described . Please refer staged.dependencies package documentation details.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"coding-guidelines","dir":"","previous_headings":"","what":"Coding guidelines","title":"Contribution Guidelines","text":"repository follows unified processes standards adopted maintainers ensure software development carried consistently within teams cohesively across repositories.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"style-guide","dir":"","previous_headings":"Coding guidelines","what":"Style guide","title":"Contribution Guidelines","text":"repository follows standard tidyverse style guide uses lintr lint checks. Customized lint configurations available repository’s .lintr file.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"dependency-management","dir":"","previous_headings":"Coding guidelines","what":"Dependency management","title":"Contribution Guidelines","text":"Lightweight right weight. repository follows tinyverse recommedations limiting dependencies minimum.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"dependency-version-management","dir":"","previous_headings":"Coding guidelines","what":"Dependency version management","title":"Contribution Guidelines","text":"code compatible (!) historical versions given dependenct package, required specify minimal version DESCRIPTION file. particular: development version requires (imports) development version another package - required put abc (>= 1.2.3.9000).","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"r--package-versions","dir":"","previous_headings":"Coding guidelines > Recommended development environment & tools","what":"R & package versions","title":"Contribution Guidelines","text":"continuously test packages newest R version along recent dependencies CRAN BioConductor. recommend working environment also set way. can find details R version packages used R CMD check GitHub Action execution log - step prints R sessionInfo(). discover bugs older R versions older set dependencies, please create relevant bug reports.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"pre-commit","dir":"","previous_headings":"Coding guidelines > Recommended development environment & tools","what":"pre-commit","title":"Contribution Guidelines","text":"highly recommend use pre-commit tool combined R hooks pre-commit execute checks committing pushing changes. Pre-commit hooks already available repository’s .pre-commit-config.yaml file.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"recognition-model","dir":"","previous_headings":"","what":"Recognition model","title":"Contribution Guidelines","text":"mentioned previously, contributions deeply valued appreciated. contribution data available part repository insights, recognize significant contribution hence add contributor package authors list, following rules enforced: Minimum 5% lines code authored* (determined git blame query) top 5 contributors terms number commits lines added lines removed* *Excluding auto-generated code, including limited roxygen comments renv.lock files. package maintainer also reserves right adjust criteria recognize contributions.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/CONTRIBUTING.html","id":"questions","dir":"","previous_headings":"","what":"Questions","title":"Contribution Guidelines","text":"questions regarding contribution guidelines, please contact package/repository maintainer.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/SECURITY.html","id":"reporting-security-issues","dir":"","previous_headings":"","what":"Reporting Security Issues","title":"Security Policy","text":"believe found security vulnerability repositories organization, please report us coordinated disclosure. Please report security vulnerabilities public GitHub issues, discussions, pull requests. Instead, please send email vulnerability.management[@]roche.com. Please include much information listed can help us better understand resolve issue: type issue (e.g., buffer overflow, SQL injection, cross-site scripting) Full paths source file(s) related manifestation issue location affected source code (tag/branch/commit direct URL) special configuration required reproduce issue Step--step instructions reproduce issue Proof--concept exploit code (possible) Impact issue, including attacker might exploit issue information help us triage report quickly.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/SECURITY.html","id":"data-security-standards-dss","dir":"","previous_headings":"","what":"Data Security Standards (DSS)","title":"Security Policy","text":"Please make sure reporting issues form bug, feature, pull request, sensitive information PII, PHI, PCI completely removed text attachments, including pictures videos.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Nina Qi. Author, maintainer. Dawid Kaledkowski. Author. Chendi Liao. Author. Liming Li. Author. Konrad Pagacz. Author. Molly . Contributor. Carolyn Zhang. Contributor. Tina Cho. Contributor. F. Hoffmann-La Roche AG. Copyright holder, funder.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Qi N, Kaledkowski D, Liao C, Li L, Pagacz K (2024). teal.osprey: 'teal' Modules TLG Functions Osprey. R package version 0.1.16.9028, https://github.com/insightsengineering/teal.osprey/, https://insightsengineering.github.io/teal.osprey/.","code":"@Manual{,   title = {teal.osprey: 'teal' Modules for TLG Functions in Osprey},   author = {Nina Qi and Dawid Kaledkowski and Chendi Liao and Liming Li and Konrad Pagacz},   year = {2024},   note = {R package version 0.1.16.9028,     https://github.com/insightsengineering/teal.osprey/},   url = {https://insightsengineering.github.io/teal.osprey/}, }"},{"path":"https://insightsengineering.github.io/teal.osprey/index.html","id":"tealosprey","dir":"","previous_headings":"","what":"teal Modules for TLG Functions in Osprey","title":"teal Modules for TLG Functions in Osprey","text":"teal.osprey provides community contributed teal modules analysis functions osprey package. enables teal app developers easily create applications making use osprey.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"teal Modules for TLG Functions in Osprey","text":"","code":"# stable versions # install.packages(\"pak\") pak::pkg_install(\"insightsengineering/teal.osprey@*release\")  # beta versions # install.packages(\"pak\") pak::pkg_install(\"insightsengineering/teal.osprey\")"},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/reference/argument_convention.html","id":null,"dir":"Reference","previous_headings":"","what":"Standard Arguments — argument_convention","title":"Standard Arguments — argument_convention","text":"documentation function lists arguments teal modules used repeatedly express analysis.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/argument_convention.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Standard Arguments — argument_convention","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). arm_var (choices_selected) object available choices pre-selected option variable names can used arm_var. See teal.transform::choices_selected() details. Column arm_var dataname factor. paramcd (character(1) choices_selected) variable value designating studied parameter. See teal.transform::choices_selected() details. fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/argument_convention.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Standard Arguments — argument_convention","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/argument_convention.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Standard Arguments — argument_convention","text":"Although function just returns NULL two uses, teal module users provides documentation arguments commonly consistently used framework. developer adds single reference point import roxygen argument description : @inheritParams argument_convention","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/as_numeric_from_comma_sep_str.html","id":null,"dir":"Reference","previous_headings":"","what":"takes input_string, splits by ","title":"takes input_string, splits by ","text":"takes input_string, splits \",\"  returns numeric vector NAs split-strings numeric. e.g. as_numeric_from_comma_separated_string(\"4  ,hello,5,, 3\") c(4, NA, 5, NA, 3). input argument NULL just whitespace NULL returned","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/as_numeric_from_comma_sep_str.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"takes input_string, splits by ","text":"","code":"as_numeric_from_comma_sep_str(input_string)"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/as_numeric_from_comma_sep_str.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"takes input_string, splits by ","text":"input_string string split numeric vector","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/get_choices.html","id":null,"dir":"Reference","previous_headings":"","what":"Get Choices — get_choices","title":"Get Choices — get_choices","text":"function returns choices based class input. input class delayed_data, returns subset input. subset NULL input contains var_label var_choices, throws error prompting resolve delayed inputs. Otherwise, returns input .","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/get_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get Choices — get_choices","text":"","code":"get_choices(choices)"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/get_choices.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get Choices — get_choices","text":"choices object contains choices.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/get_choices.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get Choices — get_choices","text":"vector choices.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/include_css_files.html","id":null,"dir":"Reference","previous_headings":"","what":"Include CSS files from /inst/css/ package directory to application header — include_css_files","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"system.file used access files packages, work devtools. Therefore, redefine method package needed. Thus, export method.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/include_css_files.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"","code":"include_css_files(pattern = \"*\")"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/include_css_files.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"pattern (character) pattern files included","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/include_css_files.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"HTML code includes CSS files","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/label_aevar.html","id":null,"dir":"Reference","previous_headings":"","what":"Automatically switch variable labels for standard AE variables in AE osprey functions  — label_aevar","title":"Automatically switch variable labels for standard AE variables in AE osprey functions  — label_aevar","text":"Automatically switch variable labels standard AE variables AE osprey functions","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/label_aevar.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Automatically switch variable labels for standard AE variables in AE osprey functions  — label_aevar","text":"","code":"label_aevar(x)"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/label_aevar.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Automatically switch variable labels for standard AE variables in AE osprey functions  — label_aevar","text":"x variable key","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/name_ci.html","id":null,"dir":"Reference","previous_headings":"","what":"retrieve name of ci method — name_ci","title":"retrieve name of ci method — name_ci","text":"retrieve name ci method retrieve detailed name ci method","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/name_ci.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"retrieve name of ci method — name_ci","text":"","code":"name_ci(x = ci_choices)  name_ci(x = ci_choices)"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/name_ci.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"retrieve name of ci method — name_ci","text":"x ci method retrieve name","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/reference/plot_decorate_output.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper function to plot decorated output UI — plot_decorate_output","text":"","code":"plot_decorate_output(id)"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/plot_decorate_output.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper function to plot decorated output UI — plot_decorate_output","text":"id (character) id element","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/quick_filter.html","id":null,"dir":"Reference","previous_headings":"","what":"Utility function for quick filter  — quick_filter","title":"Utility function for quick filter  — quick_filter","text":"Utility function quick filter","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/quick_filter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Utility function for quick filter  — quick_filter","text":"","code":"quick_filter(filter_opt, ANL)"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/quick_filter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Utility function for quick filter  — quick_filter","text":"filter_opt vector string names flag variable filter (keep Y rows ) ANL input dataset","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/quick_filter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Utility function for quick filter  — quick_filter","text":"filtered dataframe","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/quick_filter.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Utility function for quick filter  — quick_filter","text":"Carolyn Zhang (zhanc107) carolyn.zhang@duke.edu","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/shared_params.html","id":null,"dir":"Reference","previous_headings":"","what":"Shared Parameters — shared_params","title":"Shared Parameters — shared_params","text":"Contains arguments shared multiple functions package avoid repetition using inheritParams.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/shared_params.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shared Parameters — shared_params","text":"plot_height (numeric) optional vector length three c(value, min, max). Specifies height main plot. plot_width (numeric) optional vector length three c(value, min, max). Specifies width main plot renders slider plot interactively adjust plot width. label (character) module label teal app. Please note module developed based ADaM data structure ADaM variables.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/srv_g_decorate.html","id":null,"dir":"Reference","previous_headings":"","what":"Helper server function to decorate plot output — srv_g_decorate","title":"Helper server function to decorate plot output — srv_g_decorate","text":"used tm_g_ae_oview() tm_g_events_term_id().","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/srv_g_decorate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper server function to decorate plot output — srv_g_decorate","text":"","code":"srv_g_decorate(   id,   plot_id = \"out\",   plt = reactive(NULL),   plot_height,   plot_width )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/srv_g_decorate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper server function to decorate plot output — srv_g_decorate","text":"id (character) id module plot_id (character) id plot output plt (reactive) reactive object graph object plot_height (numeric) optional vector length three c(value, min, max). Specifies height main plot. plot_width (numeric) optional vector length three c(value, min, max). Specifies width main plot renders slider plot interactively adjust plot width.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/teal.osprey-package.html","id":null,"dir":"Reference","previous_headings":"","what":"teal.osprey: teal modules for 'osprey' — teal.osprey-package","title":"teal.osprey: teal modules for 'osprey' — teal.osprey-package","text":"teal.osprey provides community contributed teal modules analysis functions osprey package. See package website. enables teal app developers easily create applications making use osprey analysis functions.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/reference/teal.osprey-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"teal.osprey: teal modules for 'osprey' — teal.osprey-package","text":"Maintainer: Nina Qi qit3@gene.com Authors: Dawid Kaledkowski dawid.kaledkowski@roche.com Chendi Liao chendi.liao@roche.com Liming Li liming.li@roche.com Konrad Pagacz contributors: Molly [contributor] Carolyn Zhang [contributor] Tina Cho [contributor] F. Hoffmann-La Roche AG [copyright holder, funder]","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_oview.html","id":null,"dir":"Reference","previous_headings":"","what":"Teal module for the AE overview — tm_g_ae_oview","title":"Teal module for the AE overview — tm_g_ae_oview","text":"Display AE overview plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_oview.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Teal module for the AE overview — tm_g_ae_oview","text":"","code":"tm_g_ae_oview(   label,   dataname,   arm_var,   flag_var_anl,   fontsize = c(5, 3, 7),   plot_height = c(600L, 200L, 2000L),   plot_width = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_oview.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Teal module for the AE overview — tm_g_ae_oview","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). arm_var (choices_selected) object available choices pre-selected option variable names can used arm_var. See teal.transform::choices_selected() details. Column arm_var dataname factor. flag_var_anl (teal.transform::choices_selected) choices_selected object variables used count adverse event sub-groups (e.g. Serious events, Related events, etc.) fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_oview.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Teal module for the AE overview — tm_g_ae_oview","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_oview.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Teal module for the AE overview — tm_g_ae_oview","text":"","code":"data <- teal_data() |>   within({     ADSL <- rADSL     ADAE <- rADAE     add_event_flags <- function(dat) {       dat <- dat |>         mutate(           TMPFL_SER = AESER == \"Y\",           TMPFL_REL = AEREL == \"Y\",           TMPFL_GR5 = AETOXGR == \"5\",           AEREL1 = (AEREL == \"Y\" & ACTARM == \"A: Drug X\"),           AEREL2 = (AEREL == \"Y\" & ACTARM == \"B: Placebo\")         )       labels <- c(         \"Serious AE\", \"Related AE\", \"Grade 5 AE\",         \"AE related to A: Drug X\", \"AE related to B: Placebo\"       )       cols <- c(\"TMPFL_SER\", \"TMPFL_REL\", \"TMPFL_GR5\", \"AEREL1\", \"AEREL2\")       for (i in seq_along(labels)) {         attr(dat[[cols[i]]], \"label\") <- labels[i]       }       dat     }     ADAE <- add_event_flags(ADAE)   })  datanames(data) <- c(\"ADSL\", \"ADAE\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  ADAE <- data[[\"ADAE\"]]  app <- init(   data = data,   modules = modules(     tm_g_ae_oview(       label = \"AE Overview\",       dataname = \"ADAE\",       arm_var = choices_selected(         selected = \"ACTARM\",         choices = c(\"ACTARM\", \"ACTARMCD\")       ),       flag_var_anl = choices_selected(         selected = \"AEREL1\",         choices = variable_choices(           ADAE,           c(\"TMPFL_SER\", \"TMPFL_REL\", \"TMPFL_GR5\", \"AEREL1\", \"AEREL2\")         ),       ),       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_ae_oview #> Warning: 'package:teal.osprey' may not be available when loading #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_sub.html","id":null,"dir":"Reference","previous_headings":"","what":"teal module for the AE by subgroups — tm_g_ae_sub","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"Display AE subgroups plot teal module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_sub.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"","code":"tm_g_ae_sub(   label,   dataname,   arm_var,   group_var,   plot_height = c(600L, 200L, 2000L),   plot_width = NULL,   fontsize = c(5, 3, 7) )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_sub.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). arm_var (choices_selected) object available choices pre-selected option variable names can used arm_var. See teal.transform::choices_selected() details. Column arm_var dataname factor. group_var (choices_selected) subgroups variables. See teal.transform::choices_selected() details. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_sub.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_sub.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"Liming Li (Lil128) liming.li@roche.com Molly (hey59) hey59@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_ae_sub.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"","code":"# Example using stream (ADaM) dataset data <- teal_data() |>   within({     ADSL <- rADSL     ADAE <- rADAE   })  datanames(data) <- c(\"ADSL\", \"ADAE\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_ae_sub(       label = \"AE by Subgroup\",       dataname = \"ADAE\",       arm_var = choices_selected(         selected = \"ACTARMCD\",         choices = c(\"ACTARM\", \"ACTARMCD\")       ),       group_var = choices_selected(         selected = c(\"SEX\", \"REGION1\", \"RACE\"),         choices = c(\"SEX\", \"REGION1\", \"RACE\")       ),       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_ae_sub #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_butterfly.html","id":null,"dir":"Reference","previous_headings":"","what":"Butterfly plot Teal Module — tm_g_butterfly","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"Display butterfly plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_butterfly.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"","code":"tm_g_butterfly(   label,   dataname,   filter_var = NULL,   right_var,   left_var,   category_var,   color_by_var,   count_by_var,   facet_var = NULL,   sort_by_var = teal.transform::choices_selected(selected = \"count\", choices = c(\"count\",     \"alphabetical\")),   legend_on = TRUE,   plot_height = c(600L, 200L, 2000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_butterfly.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). filter_var (choices_selected) variable name data filter, please see details regarding expected values, default isNULL.choices vector filter_var choices, default NULL right_var (choices_selected) dichotomization variable right side left_var (choices_selected) dichotomization variable left side category_var (choices_selected) category (y axis) variable color_by_var (choices_selected) variable defines color blocks within bar count_by_var (choices_selected) variable defines x axis calculated facet_var (choices_selected) variable row facets sort_by_var (choices_selected) argument order class term elements table, default \"count\" legend_on (boolean) value whether legend displayed plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_butterfly.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_butterfly.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"filter_var option designed work conjunction filtering function provided teal (encoding panel right hand side shiny app). can used quick access predefined subsets domain datasets (subject-level dataset) used analysis, denoted value \"Y\". variable within filter_var_choices expected contain values either \"Y\" \"N\". multiple variables selected filter_var, observations \"Y\" value every selected variables used subsequent analysis. Flag variables (ADaM datasets) can used directly filter.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_butterfly.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"Carolyn Zhang (zhanc107) carolyn.zhang@duke.edu Chendi Liao (liaoc10) chendi.liao@roche.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_butterfly.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"","code":"# Example using stream (ADaM) dataset data <- teal_data() |>   within({     library(dplyr)     set.seed(23)     ADSL <- rADSL     ADAE <- rADAE     ADSL <- mutate(ADSL, DOSE = paste(sample(1:3, n(), replace = TRUE), \"UG\"))     ADAE <- mutate(       ADAE,       flag1 = ifelse(AETOXGR == 1, 1, 0),       flag2 = ifelse(AETOXGR == 2, 1, 0),       flag3 = ifelse(AETOXGR == 3, 1, 0),       flag1_filt = rep(\"Y\", n())     )   })  datanames(data) <- c(\"ADSL\", \"ADAE\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_butterfly(       label = \"Butterfly Plot\",       dataname = \"ADAE\",       right_var = choices_selected(         selected = \"SEX\",         choices = c(\"SEX\", \"ARM\", \"RACE\")       ),       left_var = choices_selected(         selected = \"RACE\",         choices = c(\"SEX\", \"ARM\", \"RACE\")       ),       category_var = choices_selected(         selected = \"AEBODSYS\",         choices = c(\"AEDECOD\", \"AEBODSYS\")       ),       color_by_var = choices_selected(         selected = \"AETOXGR\",         choices = c(\"AETOXGR\", \"None\")       ),       count_by_var = choices_selected(         selected = \"# of patients\",         choices = c(\"# of patients\", \"# of AEs\")       ),       facet_var = choices_selected(         selected = NULL,         choices = c(\"RACE\", \"SEX\", \"ARM\")       ),       sort_by_var = choices_selected(         selected = \"count\",         choices = c(\"count\", \"alphabetical\")       ),       legend_on = TRUE,       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_butterfly #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_events_term_id.html","id":null,"dir":"Reference","previous_headings":"","what":"Events by Term Plot Teal Module — tm_g_events_term_id","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"Display Events Term plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_events_term_id.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"","code":"tm_g_events_term_id(   label,   dataname,   term_var,   arm_var,   fontsize = c(5, 3, 7),   plot_height = c(600L, 200L, 2000L),   plot_width = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_events_term_id.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). term_var teal.transform::choices_selected object available choices pre-selected option names can used specify term events arm_var (choices_selected) object available choices pre-selected option variable names can used arm_var. See teal.transform::choices_selected() details. Column arm_var dataname factor. fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_events_term_id.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_events_term_id.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"Liming Li (lil128) liming.li@roche.com Molly (hey59) hey59@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_events_term_id.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"","code":"data <- teal_data() |>   within({     ADSL <- rADSL     ADAE <- rADAE   })  datanames(data) <- c(\"ADSL\", \"ADAE\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_events_term_id(       label = \"Common AE\",       dataname = \"ADAE\",       term_var = choices_selected(         selected = \"AEDECOD\",         choices = c(           \"AEDECOD\", \"AETERM\",           \"AEHLT\", \"AELLT\", \"AEBODSYS\"         )       ),       arm_var = choices_selected(         selected = \"ACTARMCD\",         choices = c(\"ACTARM\", \"ACTARMCD\")       ),       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_events_term_id #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_heat_bygrade.html","id":null,"dir":"Reference","previous_headings":"","what":"Teal module for the heatmap by grade — tm_g_heat_bygrade","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"Display heatmap grade shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_heat_bygrade.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"","code":"tm_g_heat_bygrade(   label,   sl_dataname,   ex_dataname,   ae_dataname,   cm_dataname = NA,   id_var,   visit_var,   ongo_var,   anno_var,   heat_var,   conmed_var = NULL,   fontsize = c(5, 3, 7),   plot_height = c(600L, 200L, 2000L),   plot_width = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_heat_bygrade.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"label (character(1)) menu item label module teal app. sl_dataname (character) subject level dataset name, needs available list passed data argument teal::init() ex_dataname (character) exposures dataset name, needs available list passed data argument teal::init() ae_dataname (character) adverse events dataset name, needs available list passed data argument teal::init() cm_dataname (character) concomitant medications dataset name, needs available list passed data argument teal::init()  specify NA concomitant medications data available id_var (choices_seleced) unique subject ID variable visit_var (choices_seleced) analysis visit variable ongo_var (choices_seleced) study ongoing status variable. variable derived logical variable. Usually can derived EOSSTT. anno_var (choices_seleced) annotation variable heat_var (choices_seleced) heatmap variable conmed_var (choices_seleced) concomitant medications variable, specify NA concomitant medications data available fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_heat_bygrade.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_heat_bygrade.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"","code":"data <- teal_data() |>   within({     library(dplyr)     ADSL <- rADSL %>% slice(1:30)     ADEX <- rADEX %>% filter(USUBJID %in% ADSL$USUBJID)     ADAE <- rADAE %>% filter(USUBJID %in% ADSL$USUBJID)     ADCM <- rADCM %>% filter(USUBJID %in% ADSL$USUBJID)     # This preprocess is only to force legacy standard on ADCM     ADCM <- ADCM %>%       select(-starts_with(\"ATC\")) %>%       unique()     # function to derive AVISIT from ADEX     add_visit <- function(data_need_visit) {       visit_dates <- ADEX %>%         filter(PARAMCD == \"DOSE\") %>%         distinct(USUBJID, AVISIT, ASTDTM) %>%         group_by(USUBJID) %>%         arrange(ASTDTM) %>%         mutate(next_vis = lead(ASTDTM), is_last = ifelse(is.na(next_vis), TRUE, FALSE)) %>%         rename(this_vis = ASTDTM)       data_visit <- data_need_visit %>%         select(USUBJID, ASTDTM) %>%         left_join(visit_dates, by = \"USUBJID\") %>%         filter(ASTDTM > this_vis & (ASTDTM < next_vis | is_last == TRUE)) %>%         left_join(data_need_visit) %>%         distinct()       return(data_visit)     }     # derive AVISIT for ADAE and ADCM     ADAE <- add_visit(ADAE)     ADCM <- add_visit(ADCM)     # derive ongoing status variable for ADEX     ADEX <- ADEX %>%       filter(PARCAT1 == \"INDIVIDUAL\") %>%       mutate(ongo_status = (EOSSTT == \"ONGOING\"))   })  datanames(data) <- c(\"ADSL\", \"ADEX\", \"ADAE\", \"ADCM\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  ADCM <- data[[\"ADCM\"]]  app <- init(   data = data,   modules = modules(     tm_g_heat_bygrade(       label = \"Heatmap by grade\",       sl_dataname = \"ADSL\",       ex_dataname = \"ADEX\",       ae_dataname = \"ADAE\",       cm_dataname = \"ADCM\",       id_var = choices_selected(         selected = \"USUBJID\",         choices = c(\"USUBJID\", \"SUBJID\")       ),       visit_var = choices_selected(         selected = \"AVISIT\",         choices = c(\"AVISIT\")       ),       ongo_var = choices_selected(         selected = \"ongo_status\",         choices = c(\"ongo_status\")       ),       anno_var = choices_selected(         selected = c(\"SEX\", \"COUNTRY\"),         choices = c(\"SEX\", \"COUNTRY\", \"USUBJID\")       ),       heat_var = choices_selected(         selected = \"AETOXGR\",         choices = c(\"AETOXGR\")       ),       conmed_var = choices_selected(         selected = \"CMDECOD\",         choices = c(\"CMDECOD\")       ),       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_heat_bygrade #> Warning: 'package:teal.osprey' may not be available when loading #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_patient_profile.html","id":null,"dir":"Reference","previous_headings":"","what":"Patient Profile plot teal module — tm_g_patient_profile","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"Display patient profile plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_patient_profile.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"","code":"tm_g_patient_profile(   label = \"Patient Profile Plot\",   patient_id,   sl_dataname,   ex_dataname = NA,   ae_dataname = NA,   rs_dataname = NA,   cm_dataname = NA,   lb_dataname = NA,   sl_start_date,   ex_var = NULL,   ae_var = NULL,   ae_line_col_var = NULL,   ae_line_col_opt = NULL,   rs_var = NULL,   cm_var = NULL,   lb_var = NULL,   x_limit = \"-28, 365\",   plot_height = c(1200L, 400L, 5000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_patient_profile.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"label (character(1)) menu item label module teal app. patient_id (choices_seleced) unique subject ID variable sl_dataname (character) subject level dataset name, needs available list passed data argument teal::init() ex_dataname, ae_dataname, rs_dataname, cm_dataname, lb_dataname (character(1)) names exposure, adverse events, response, concomitant medications, labs datasets, respectively; must available list passed data argument teal::init() set NA (default) omit analysis sl_start_date choices_selected study start date variable, usually set treatment start date randomization date ex_var choices_selected exposure variable plot line  leave unspecified set NULL exposure data available ae_var choices_selected adverse event variable plot line  leave unspecified set NULL adverse events data available ae_line_col_var choices_selected variable coloring AE lines  leave unspecified set NULL adverse events data available ae_line_col_opt aesthetic values map color values (named vector map color values name). NULL, please make sure contains possible values ae_line_col_var values.  leave unspecified set NULL adverse events data available rs_var choices_selected response variable plot line  leave unspecified set NULL response data available cm_var choices_selected concomitant medication variable plot line  leave unspecified set NULL concomitant medications data available lb_var choices_selected lab variable plot line  leave unspecified set NULL labs data available x_limit single character string two numbers separated comma indicating x-axis limit, default \"-28, 365\" plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_patient_profile.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_patient_profile.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"patient profile module plots different domains one plot, study day (x-axis) derived consistency based start date user's choice app (example, ADSL.RANDDT ADSL.TRTSDT): ADAE, ADEX, ADCM, study day based ASTDT /AENDT reference start date ADRS ADLB, study day based ADT reference start date","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_patient_profile.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"Xuefeng Hou (houx14) houx14@gene.com Tina Cho (chot) tina.cho@roche.com Molly (hey59) hey59@gene.com Ting Qi (qit3) qit3@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_patient_profile.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"","code":"data <- teal_data() |>   within({     ADSL <- rADSL     ADAE <- rADAE %>% mutate(ASTDT = as.Date(ASTDTM), AENDT = as.Date(AENDTM))     ADCM <- rADCM %>% mutate(ASTDT = as.Date(ASTDTM), AENDT = as.Date(AENDTM))     # The step below is to pre-process ADCM to legacy standard     ADCM <- ADCM %>%       select(-starts_with(\"ATC\")) %>%       unique()     ADRS <- rADRS %>% mutate(ADT = as.Date(ADTM))     ADEX <- rADEX %>% mutate(ASTDT = as.Date(ASTDTM), AENDT = as.Date(AENDTM))     ADLB <- rADLB %>% mutate(ADT = as.Date(ADTM), LBSTRESN = as.numeric(LBSTRESC))   })  datanames(data) <- c(\"ADSL\", \"ADAE\", \"ADCM\", \"ADRS\", \"ADEX\", \"ADLB\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  ADSL <- data[[\"ADSL\"]]  app <- init(   data = data,   modules = modules(     tm_g_patient_profile(       label = \"Patient Profile Plot\",       patient_id = choices_selected(         choices = unique(ADSL$USUBJID),         selected = unique(ADSL$USUBJID)[1]       ),       sl_dataname = \"ADSL\",       ex_dataname = \"ADEX\",       ae_dataname = \"ADAE\",       rs_dataname = \"ADRS\",       cm_dataname = \"ADCM\",       lb_dataname = \"ADLB\",       sl_start_date = choices_selected(         selected = \"TRTSDTM\",         choices = c(\"TRTSDTM\", \"RANDDT\")       ),       ex_var = choices_selected(         selected = \"PARCAT2\",         choices = \"PARCAT2\"       ),       ae_var = choices_selected(         selected = \"AEDECOD\",         choices = c(\"AEDECOD\", \"AESOC\")       ),       ae_line_col_var = choices_selected(         selected = \"AESER\",         choices = c(\"AESER\", \"AEREL\")       ),       ae_line_col_opt = c(\"Y\" = \"red\", \"N\" = \"blue\"),       rs_var = choices_selected(         selected = \"PARAMCD\",         choices = \"PARAMCD\"       ),       cm_var = choices_selected(         selected = \"CMDECOD\",         choices = c(\"CMDECOD\", \"CMCAT\")       ),       lb_var = choices_selected(         selected = \"LBTESTCD\",         choices = c(\"LBTESTCD\", \"LBCAT\")       ),       x_limit = \"-28, 750\",       plot_height = c(1200, 400, 5000)     )   ) ) #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_spiderplot.html","id":null,"dir":"Reference","previous_headings":"","what":"Spider plot Teal Module — tm_g_spiderplot","title":"Spider plot Teal Module — tm_g_spiderplot","text":"Display spider plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_spiderplot.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Spider plot Teal Module — tm_g_spiderplot","text":"","code":"tm_g_spiderplot(   label,   dataname,   paramcd,   x_var,   y_var,   marker_var,   line_colorby_var,   xfacet_var = NULL,   yfacet_var = NULL,   vref_line = NULL,   href_line = NULL,   anno_txt_var = TRUE,   legend_on = FALSE,   plot_height = c(600L, 200L, 2000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_spiderplot.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Spider plot Teal Module — tm_g_spiderplot","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). paramcd (character(1) choices_selected) variable value designating studied parameter. See teal.transform::choices_selected() details. x_var x-axis variables y_var y-axis variables marker_var variable dictates marker symbol line_colorby_var variable dictates line color xfacet_var variable x facets yfacet_var variable y facets vref_line vertical reference lines href_line horizontal reference lines anno_txt_var annotation text legend_on boolean value whether legend displayed plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_spiderplot.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Spider plot Teal Module — tm_g_spiderplot","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_spiderplot.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Spider plot Teal Module — tm_g_spiderplot","text":"Carolyn Zhang (zhanc107) carolyn.zhang@duke.edu Chendi Liao (liaoc10) chendi.liao@roche.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_spiderplot.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Spider plot Teal Module — tm_g_spiderplot","text":"","code":"# Example using stream (ADaM) dataset data <- teal_data() |>   within({     ADSL <- rADSL     ADTR <- rADTR   })  datanames(data) <- c(\"ADSL\", \"ADTR\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_spiderplot(       label = \"Spider plot\",       dataname = \"ADTR\",       paramcd = choices_selected(         choices = \"SLDINV\",         selected = \"SLDINV\"       ),       x_var = choices_selected(         choices = \"ADY\",         selected = \"ADY\"       ),       y_var = choices_selected(         choices = c(\"PCHG\", \"CHG\", \"AVAL\"),         selected = \"PCHG\"       ),       marker_var = choices_selected(         choices = c(\"SEX\", \"RACE\", \"USUBJID\"),         selected = \"SEX\"       ),       line_colorby_var = choices_selected(         choices = c(\"SEX\", \"USUBJID\", \"RACE\"),         selected = \"SEX\"       ),       xfacet_var = choices_selected(         choices = c(\"SEX\", \"ARM\"),         selected = \"SEX\"       ),       yfacet_var = choices_selected(         choices = c(\"SEX\", \"ARM\"),         selected = \"ARM\"       ),       vref_line = \"10, 37\",       href_line = \"-20, 0\"     )   ) ) #> Initializing tm_g_spiderplot #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_swimlane.html","id":null,"dir":"Reference","previous_headings":"","what":"Teal Module for Swimlane Plot — tm_g_swimlane","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"teal module generates swimlane plot (bar plot markers) ADaM data","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_swimlane.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"","code":"tm_g_swimlane(   label,   dataname,   bar_var,   bar_color_var = NULL,   sort_var = NULL,   marker_pos_var = NULL,   marker_shape_var = NULL,   marker_shape_opt = NULL,   marker_color_var = NULL,   marker_color_opt = NULL,   anno_txt_var = NULL,   vref_line = NULL,   plot_height = c(1200L, 400L, 5000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL,   x_label = \"Time from First Treatment (Day)\" )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_swimlane.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"label (character(1)) menu item label module teal app. dataname analysis data used plotting, needs available list passed data argument teal::init(). markers plotted module, \"ADSL\" input. markers plotted, data name marker data input bar_var teal.transform::choices_selected subject-level numeric variable dataset plot bar length bar_color_var teal.transform::choices_selected color variable (subject-level) sort_var choices_selected sort variable (subject-level) marker_pos_var teal.transform::choices_selected variable marker position marker data (Note: make sure marker position relative start day bar length variable bar_var marker_shape_var teal.transform::choices_selected marker shape variable marker data marker_shape_opt aesthetic values map shape values (named vector map shape values name). NULL, please make sure contains possible values marker_shape_var values, otherwise shape assigned ggplot default marker_color_var marker color variable marker data marker_color_opt aesthetic values map color values (named vector map color values name). NULL, please make sure contains possible values marker_color_var values, otherwise color assigned ggplot default anno_txt_var character vector subject-level variable names selected annotation vref_line vertical reference lines plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful. x_label label x axis","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_swimlane.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_swimlane.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"Ting Qi (qit3) qit3@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_swimlane.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"","code":"# Example using stream (ADaM) dataset data <- teal_data() |>   within({     library(dplyr)     ADSL <- rADSL %>%       mutate(TRTDURD = as.integer(TRTEDTM - TRTSDTM) + 1) %>%       filter(STRATA1 == \"A\" & ARMCD == \"ARM A\")     ADRS <- rADRS %>%       filter(PARAMCD == \"LSTASDI\" & DCSREAS == \"Death\") %>%       mutate(AVALC = DCSREAS, ADY = EOSDY) %>%       rbind(rADRS %>% filter(PARAMCD == \"OVRINV\" & AVALC != \"NE\")) %>%       arrange(USUBJID)   })  datanames(data) <- c(\"ADSL\", \"ADRS\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  ADSL <- data[[\"ADSL\"]] ADRS <- data[[\"ADRS\"]]  app <- init(   data = data,   modules = modules(     tm_g_swimlane(       label = \"Swimlane Plot\",       dataname = \"ADRS\",       bar_var = choices_selected(         selected = \"TRTDURD\",         choices = c(\"TRTDURD\", \"EOSDY\")       ),       bar_color_var = choices_selected(         selected = \"EOSSTT\",         choices = c(\"EOSSTT\", \"ARM\", \"ARMCD\", \"ACTARM\", \"ACTARMCD\", \"SEX\")       ),       sort_var = choices_selected(         selected = \"ACTARMCD\",         choices = c(\"USUBJID\", \"SITEID\", \"ACTARMCD\", \"TRTDURD\")       ),       marker_pos_var = choices_selected(         selected = \"ADY\",         choices = c(\"ADY\")       ),       marker_shape_var = choices_selected(         selected = \"AVALC\",         c(\"AVALC\", \"AVISIT\")       ),       marker_shape_opt = c(\"CR\" = 16, \"PR\" = 17, \"SD\" = 18, \"PD\" = 15, \"Death\" = 8),       marker_color_var = choices_selected(         selected = \"AVALC\",         choices = c(\"AVALC\", \"AVISIT\")       ),       marker_color_opt = c(         \"CR\" = \"green\", \"PR\" = \"blue\", \"SD\" = \"goldenrod\",         \"PD\" = \"red\", \"Death\" = \"black\"       ),       vref_line = c(30, 60),       anno_txt_var = choices_selected(         selected = c(\"ACTARM\", \"SEX\"),         choices = c(           \"ARM\", \"ARMCD\", \"ACTARM\", \"ACTARMCD\", \"AGEGR1\",           \"SEX\", \"RACE\", \"COUNTRY\", \"DCSREAS\", \"DCSREASP\"         )       )     )   ) ) #> Initializing tm_g_swimlane #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_waterfall.html","id":null,"dir":"Reference","previous_headings":"","what":"Teal Module for Waterfall Plot — tm_g_waterfall","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"teal module generates waterfall plot ADaM data","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_waterfall.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"","code":"tm_g_waterfall(   label,   dataname_tr = \"ADTR\",   dataname_rs = \"ADRS\",   bar_paramcd,   bar_var,   bar_color_var,   bar_color_opt = NULL,   sort_var,   add_label_var_sl,   add_label_paramcd_rs,   anno_txt_var_sl,   anno_txt_paramcd_rs,   facet_var,   ytick_at = 20,   href_line = NULL,   gap_point_val = NULL,   show_value = TRUE,   plot_height = c(1200L, 400L, 5000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_waterfall.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"label (character(1)) menu item label module teal app. dataname_tr tumor burden analysis data used teal module plot bar height, needs available list passed data argument teal::init() dataname_rs response analysis data used teal module label response parameters, needs available list passed data argument teal::init() bar_paramcd choices_selected parameter tumor burden data plotted bar height bar_var choices_selected numeric variable dataset plot bar height, e.g., PCHG bar_color_var choices_selected color variable (subject level), None corresponds NULL bar_color_opt aesthetic values map color values (named vector map color values name). NULL, please make sure contains possible values bar_color_var values, otherwise color assigned ggplot default, please note NULL needs specified case sort_var choices_selected sort variable (subject level), None corresponds NULL add_label_var_sl choices_selected add label bars (subject level), None corresponds NULL add_label_paramcd_rs choices_selected add label bars (response dataset), None corresponds NULL. least one add_label_var_sl add_label_paramcd_rs needs NULL anno_txt_var_sl choices_selected subject level variables displayed annotation table, default NULL anno_txt_paramcd_rs choices_selected analysis dataset variables displayed annotation table, default NULL facet_var choices_selected facet variable (subject level), None corresponds NULL ytick_at bar height axis interval, default 20 href_line numeric vector plot horizontal reference lines, default NULL gap_point_val singular numeric value adding bar break bars significantly higher others, default NULL show_value boolean whether value bar height shown, default TRUE plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_waterfall.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_waterfall.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"Ting Qi (qit3) qit3@gene.com houx14 houx14@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/tm_g_waterfall.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"","code":"data <- teal_data() |>   within({     ADSL <- rADSL     ADRS <- rADRS     ADTR <- rADTR     ADSL$SEX <- factor(ADSL$SEX, levels = unique(ADSL$SEX))   })  datanames(data) <- c(\"ADSL\", \"ADTR\", \"ADRS\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_waterfall(       label = \"Waterfall\",       dataname_tr = \"ADTR\",       dataname_rs = \"ADRS\",       bar_paramcd = choices_selected(c(\"SLDINV\"), \"SLDINV\"),       bar_var = choices_selected(c(\"PCHG\", \"AVAL\"), \"PCHG\"),       bar_color_var = choices_selected(c(\"ARMCD\", \"SEX\"), \"ARMCD\"),       bar_color_opt = NULL,       sort_var = choices_selected(c(\"ARMCD\", \"SEX\"), NULL),       add_label_var_sl = choices_selected(c(\"SEX\", \"EOSDY\"), NULL),       add_label_paramcd_rs = choices_selected(c(\"BESRSPI\", \"OBJRSPI\"), NULL),       anno_txt_var_sl = choices_selected(c(\"SEX\", \"ARMCD\", \"BMK1\", \"BMK2\"), NULL),       anno_txt_paramcd_rs = choices_selected(c(\"BESRSPI\", \"OBJRSPI\"), NULL),       facet_var = choices_selected(c(\"SEX\", \"ARMCD\", \"STRATA1\", \"STRATA2\"), NULL),       href_line = \"-30, 20\"     )   ) ) #> Initializing tm_g_waterfall #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/ui_g_decorate.html","id":null,"dir":"Reference","previous_headings":"","what":"Helper UI function to decorate plot output UI — ui_g_decorate","title":"Helper UI function to decorate plot output UI — ui_g_decorate","text":"used tm_g_ae_oview() tm_g_events_term_id().","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/reference/ui_g_decorate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper UI function to decorate plot output UI — ui_g_decorate","text":"","code":"ui_g_decorate(   id,   titles = \"Titles\",   footnotes = \"footnotes\",   fontsize = c(5, 4, 11) )"},{"path":"https://insightsengineering.github.io/teal.osprey/reference/ui_g_decorate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper UI function to decorate plot output UI — ui_g_decorate","text":"id (character) id module. set NULL want make identical module called . titles (character) default titles footnotes (character) default footnotes fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-01169028","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.16.9028","title":"teal.osprey 0.1.16.9028","text":"Removed Show Warnings modals modules. Moved teal.data Suggests Imports. Changed examples cdisc_data() teal_data().","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"breaking-changes-0-1-16-9028","dir":"Changelog","previous_headings":"","what":"Breaking Changes","title":"teal.osprey 0.1.16.9028","text":"Adapted modules use teal_data objects.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"enhancements-0-1-16-9028","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.16.9028","text":"Added teal.logger functionality logging changes shiny inputs modules.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"miscellaneous-0-1-16-9028","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.16.9028","text":"Specified minimal version package dependencies.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-0116","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.16","title":"teal.osprey 0.1.16","text":"Removed scda package dependency examples. Fixed crash tm_g_heat_bygrade plotting Conmed. Added validation tm_g_spiderplot.R checks duplicates X Y facet variables. Improved input validation used teal::validate_inputs mechanism send validation messages output panel. Removed purrr dependencies. Added argument checks tm_g_patient_profile. Modified example apps use new teal_data join_keys solutions.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"breaking-changes-0-1-16","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.osprey 0.1.16","text":"Replaced chunks simpler qenv class. tm_xyz_srv modules datasets argument containing FilteredData replaced new argument data (tdata object) filter_panel_api (FilterPanelAPI). Updated arm_var point factor column ANL. can’t character column anymore. Removed redundant formal arguments tm_g_patient_profile.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"breaking-changes-0-1-15","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.osprey 0.1.15","text":"Soft deprecate function label_aevar().","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"enhancements-0-1-15","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.15","text":"Added teal.reporter modules. Updated shiny::validate calls shinyvalidate better UI overview. Implemented nestcolor slight refactoring tm_g_swimlane. Added nestcolor examples.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"miscellaneous-0-1-15","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.15","text":"Added names id parameter teal.code::chunks_push modules. Updated modules use datasets names suffix _FILTERED package works breaking changes teal.slice.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"enhancements-0-1-14","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.14","text":"Removed unneeded chunk evaluations tm_g_patient_profile module.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"miscellaneous-0-1-14","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.14","text":"Added template pkgdown site. Updated package authors.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"enhancements-0-1-13","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.13","text":"Added basic logging modules. label select input widget choose paramcd longer hard coded ADTR tm_g_spiderplot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"miscellaneous-0-1-13","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.13","text":"Rewrote module use moduleServer updated calls teal.devel modules also written use moduleServer. Replaced calls teal::root_modules teal::modules following deprecation teal::root_modules. Adjusted package imports take account changes teal framework. Functions imported packages now fully specified.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"breaking-changes-0-1-12","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.osprey 0.1.12","text":"Refactored tm_g_ae_oview remove flag variables generated module default replace parameter add_flag flag_var_anl.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"enhancements-0-1-12","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.12","text":"Added new parameter x_label allowing change label x axis tm_g_swimlane module plot. Updated tm_g_ae_sub longer displays label inputs group variables values selected.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"bug-fixes-0-1-12","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"teal.osprey 0.1.12","text":"Fixed bug tm_g_waterfall Tumor Burden Parameter UI element now respected.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"miscellaneous-0-1-12","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.12","text":"Updated R version requirement R >= 3.6. Removed function teal::keys examples tm_g_spiderplot tm_g_waterfall modules. Removed dependency test.nest package. Removed dependency utils.nest package replaced functions equivalents checkmate package.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-0111","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.11","title":"teal.osprey 0.1.11","text":"Updated LICENCE README new package references. Updated document tests scda synthetic data replace random.cdisc.data. Added error_on_lint: TRUE .lintr. Removed unnecessary importFrom statements. Updated tm_g_patient_profile module’s study days range accept infinite values. Fixed disappearing plots webpage zoom /.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"enhancements-0-1-10","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.10","text":"Added Shiny feature tm_g_swimlane prevent needless re-render output user completely provided inputs vertical lines widget.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"miscellaneous-0-1-10","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.10","text":"Altered Choose 2: inputs widget Encoding Panel independent Filtering Panel tm_g_butterfly. Updated warning message Tumor Burden Parameter selected tm_g_waterfall.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"bug-fixes-0-1-10","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"teal.osprey 0.1.10","text":"Fixed bug tm_g_butterfly displays filtering faceting widgets despite provided arguments.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"new-features-0-1-9","dir":"Changelog","previous_headings":"","what":"New features","title":"teal.osprey 0.1.9","text":"Added new teal module tm_g_heat_bygrade heatmap grade plot. Added new teal module tm_g_ae_sub AE subgroups plot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"bug-fixes-0-1-9","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"teal.osprey 0.1.9","text":"Fixed misleading validate message tm_g_ae_oview either Control Treatment variable filtered . Added validate statement output better error message left right dichotomization values filtered data.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"miscellaneous-0-1-9","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.9","text":"Improved reactivity dependencies across modules.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-018","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.8","title":"teal.osprey 0.1.8","text":"Added validation message dataset contain subjects control treatment arms tm_g_events_term_id. Improved validation message subject filtered dataset used tm_g_patient_profile. Fixed modules due changes plot_with_settings latest teal.devel release. Updated study day duration derivation tm_g_patient_profile.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"enhancements-0-1-7","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.7","text":"Added additional validation horizontal vertical reference lines tm_g_spider_plot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"bug-fixes-0-1-7","dir":"Changelog","previous_headings":"","what":"Bug Fixes","title":"teal.osprey 0.1.7","text":"Fixed tm_g_patient_profile adverse event line color variable selected. Fixed issue unknown date format established minimum number observation threshold tm_g_patient_profile.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"miscellaneous-0-1-7","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.7","text":"Teal module AE overview summary table - can replaced teal.modules.clinical::tm_t_events_summary. Teal module AE summary table preferred terms - can replaced teal.modules.clinical::tm_t_events. Teal module AE summary table highest NCI-CTCAE grade - can replaced teal.modules.clinical::tm_t_events_by_grade. Teal module Disposition table - can replaced teal.modules.clinical::tm_t_summary. Moved code argument cdisc_dataset (cdisc_data) examples.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-016","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.6","title":"teal.osprey 0.1.6","text":"graph modules now accept plot_width argument specifies plot width renders slider adjust width interactively module. Replaced plot_with_height plot_with_settings module throughout package. Show R Code now produces code generating datasets needed current module, datasets included data argument teal::init. Evaluate chunks chunks_safe_eval rather chunks_eval.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-015","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.5","title":"teal.osprey 0.1.5","text":"Added new teal modules: Teal module events term summary plot. Teal module AE overview summary plot. Teal module patient profile plot","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-014","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.4","title":"teal.osprey 0.1.4","text":"Minor changes tests.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-013","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.3","title":"teal.osprey 0.1.3","text":"Technical release updated dependencies.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-012","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.2","title":"teal.osprey 0.1.2","text":"New waterfall module. Refactored due recent changes utils.nest.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-011","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.1","title":"teal.osprey 0.1.1","text":"Included test.nest tests. Fixed outdated modules according current teal functionality. Fixed documentation examples example_app.R. Simplified dependencies.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/news/index.html","id":"tealosprey-010","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.0","title":"teal.osprey 0.1.0","text":"Teal module AE overview summary table. Teal module AE summary table preferred terms. Teal module AE summary table highest NCI-CTCAE grade. Teal module Disposition table. Teal module AE butterfly plot. Teal module Swimlane plot. Teal module Spider plot.","code":""}]
+[{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement [INSERT CONTACT METHOD]. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":null,"dir":"","previous_headings":"","what":"Contribution Guidelines","title":"Contribution Guidelines","text":"🙏 Thank taking time contribute! input deeply valued, whether issue, pull request, even feedback, regardless size, content scope.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"table-of-contents","dir":"","previous_headings":"","what":"Table of contents","title":"Contribution Guidelines","text":"👶 Getting started 📔 Code Conduct 🗃 License 📜 Issues 🚩 Pull requests 💻 Coding guidelines 🏆 Recognition model ❓ Questions","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"getting-started","dir":"","previous_headings":"","what":"Getting started","title":"Contribution Guidelines","text":"Please refer project documentation brief introduction. Please also see articles within project documentation additional information.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Contribution Guidelines","text":"Code Conduct governs project. Participants contributors expected follow rules outlined therein.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"license","dir":"","previous_headings":"","what":"License","title":"Contribution Guidelines","text":"contributions covered project’s license.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"issues","dir":"","previous_headings":"","what":"Issues","title":"Contribution Guidelines","text":"use GitHub track issues, feature requests, bugs. submitting new issue, please check issue already reported. issue already exists, please upvote existing issue 👍. new feature requests, please elaborate context benefit feature users, developers, relevant personas.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"github-flow","dir":"","previous_headings":"Pull requests","what":"GitHub Flow","title":"Contribution Guidelines","text":"repository uses GitHub Flow model collaboration. submit pull request: Create branch Please see branch naming convention . don’t write access repository, please fork . Make changes Make sure code passes checks imposed GitHub Actions well documented well tested unit tests sufficiently covering changes introduced Create pull request (PR) pull request description, please link relevant issue (), provide detailed description change, include assumptions. Address review comments, Post approval Merge PR write access. Otherwise, reviewer merge PR behalf. Pat back Congratulations! 🎉 now official contributor project! grateful contribution.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"branch-naming-convention","dir":"","previous_headings":"Pull requests","what":"Branch naming convention","title":"Contribution Guidelines","text":"Suppose changes related current issue current project; please name branch follows: <issue_id>_<short_description>. Please use underscore (_) delimiter word separation. example, 420_fix_ui_bug suitable branch name change resolving UI-related bug reported issue number 420 current project. change affects multiple repositories, please name branches follows: <issue_id>_<issue_repo>_<short description>. example, 69_awesomeproject_fix_spelling_error reference issue 69 reported project awesomeproject aims resolve one spelling errors multiple (likely related) repositories.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"monorepo-and-stageddependencies","dir":"","previous_headings":"Pull requests","what":"monorepo and staged.dependencies","title":"Contribution Guidelines","text":"Sometimes might need change upstream dependent package(s) able submit meaningful change. using staged.dependencies functionality simulate monorepo behavior. dependency configuration already specified project’s staged_dependencies.yaml file. need name feature branches appropriately. exception branch naming convention described . Please refer staged.dependencies package documentation details.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"coding-guidelines","dir":"","previous_headings":"","what":"Coding guidelines","title":"Contribution Guidelines","text":"repository follows unified processes standards adopted maintainers ensure software development carried consistently within teams cohesively across repositories.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"style-guide","dir":"","previous_headings":"Coding guidelines","what":"Style guide","title":"Contribution Guidelines","text":"repository follows standard tidyverse style guide uses lintr lint checks. Customized lint configurations available repository’s .lintr file.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"dependency-management","dir":"","previous_headings":"Coding guidelines","what":"Dependency management","title":"Contribution Guidelines","text":"Lightweight right weight. repository follows tinyverse recommedations limiting dependencies minimum.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"dependency-version-management","dir":"","previous_headings":"Coding guidelines","what":"Dependency version management","title":"Contribution Guidelines","text":"code compatible (!) historical versions given dependenct package, required specify minimal version DESCRIPTION file. particular: development version requires (imports) development version another package - required put abc (>= 1.2.3.9000).","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"r--package-versions","dir":"","previous_headings":"Coding guidelines > Recommended development environment & tools","what":"R & package versions","title":"Contribution Guidelines","text":"continuously test packages newest R version along recent dependencies CRAN BioConductor. recommend working environment also set way. can find details R version packages used R CMD check GitHub Action execution log - step prints R sessionInfo(). discover bugs older R versions older set dependencies, please create relevant bug reports.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"pre-commit","dir":"","previous_headings":"Coding guidelines > Recommended development environment & tools","what":"pre-commit","title":"Contribution Guidelines","text":"highly recommend use pre-commit tool combined R hooks pre-commit execute checks committing pushing changes. Pre-commit hooks already available repository’s .pre-commit-config.yaml file.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"recognition-model","dir":"","previous_headings":"","what":"Recognition model","title":"Contribution Guidelines","text":"mentioned previously, contributions deeply valued appreciated. contribution data available part repository insights, recognize significant contribution hence add contributor package authors list, following rules enforced: Minimum 5% lines code authored* (determined git blame query) top 5 contributors terms number commits lines added lines removed* *Excluding auto-generated code, including limited roxygen comments renv.lock files. package maintainer also reserves right adjust criteria recognize contributions.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/CONTRIBUTING.html","id":"questions","dir":"","previous_headings":"","what":"Questions","title":"Contribution Guidelines","text":"questions regarding contribution guidelines, please contact package/repository maintainer.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/SECURITY.html","id":"reporting-security-issues","dir":"","previous_headings":"","what":"Reporting Security Issues","title":"Security Policy","text":"believe found security vulnerability repositories organization, please report us coordinated disclosure. Please report security vulnerabilities public GitHub issues, discussions, pull requests. Instead, please send email vulnerability.management[@]roche.com. Please include much information listed can help us better understand resolve issue: type issue (e.g., buffer overflow, SQL injection, cross-site scripting) Full paths source file(s) related manifestation issue location affected source code (tag/branch/commit direct URL) special configuration required reproduce issue Step--step instructions reproduce issue Proof--concept exploit code (possible) Impact issue, including attacker might exploit issue information help us triage report quickly.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/SECURITY.html","id":"data-security-standards-dss","dir":"","previous_headings":"","what":"Data Security Standards (DSS)","title":"Security Policy","text":"Please make sure reporting issues form bug, feature, pull request, sensitive information PII, PHI, PCI completely removed text attachments, including pictures videos.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Nina Qi. Author, maintainer. Dawid Kaledkowski. Author. Chendi Liao. Author. Liming Li. Author. Konrad Pagacz. Author. Molly . Contributor. Carolyn Zhang. Contributor. Tina Cho. Contributor. F. Hoffmann-La Roche AG. Copyright holder, funder.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Qi N, Kaledkowski D, Liao C, Li L, Pagacz K (2024). teal.osprey: 'teal' Modules TLG Functions Osprey. R package version 0.1.16.9028, https://github.com/insightsengineering/teal.osprey/, https://insightsengineering.github.io/teal.osprey/main/.","code":"@Manual{,   title = {teal.osprey: 'teal' Modules for TLG Functions in Osprey},   author = {Nina Qi and Dawid Kaledkowski and Chendi Liao and Liming Li and Konrad Pagacz},   year = {2024},   note = {R package version 0.1.16.9028,     https://github.com/insightsengineering/teal.osprey/},   url = {https://insightsengineering.github.io/teal.osprey/main/}, }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/index.html","id":"tealosprey","dir":"","previous_headings":"","what":"teal Modules for TLG Functions in Osprey","title":"teal Modules for TLG Functions in Osprey","text":"teal.osprey provides community contributed teal modules analysis functions osprey package. enables teal app developers easily create applications making use osprey.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"teal Modules for TLG Functions in Osprey","text":"","code":"# stable versions # install.packages(\"pak\") pak::pkg_install(\"insightsengineering/teal.osprey@*release\")  # beta versions # install.packages(\"pak\") pak::pkg_install(\"insightsengineering/teal.osprey\")"},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/argument_convention.html","id":null,"dir":"Reference","previous_headings":"","what":"Standard Arguments — argument_convention","title":"Standard Arguments — argument_convention","text":"documentation function lists arguments teal modules used repeatedly express analysis.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/argument_convention.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Standard Arguments — argument_convention","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). arm_var (choices_selected) object available choices pre-selected option variable names can used arm_var. See teal.transform::choices_selected() details. Column arm_var dataname factor. paramcd (character(1) choices_selected) variable value designating studied parameter. See teal.transform::choices_selected() details. fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/argument_convention.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Standard Arguments — argument_convention","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/argument_convention.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Standard Arguments — argument_convention","text":"Although function just returns NULL two uses, teal module users provides documentation arguments commonly consistently used framework. developer adds single reference point import roxygen argument description : @inheritParams argument_convention","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/as_numeric_from_comma_sep_str.html","id":null,"dir":"Reference","previous_headings":"","what":"takes input_string, splits by ","title":"takes input_string, splits by ","text":"takes input_string, splits \",\"  returns numeric vector NAs split-strings numeric. e.g. as_numeric_from_comma_separated_string(\"4  ,hello,5,, 3\") c(4, NA, 5, NA, 3). input argument NULL just whitespace NULL returned","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/as_numeric_from_comma_sep_str.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"takes input_string, splits by ","text":"","code":"as_numeric_from_comma_sep_str(input_string)"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/as_numeric_from_comma_sep_str.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"takes input_string, splits by ","text":"input_string string split numeric vector","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/get_choices.html","id":null,"dir":"Reference","previous_headings":"","what":"Get Choices — get_choices","title":"Get Choices — get_choices","text":"function returns choices based class input. input class delayed_data, returns subset input. subset NULL input contains var_label var_choices, throws error prompting resolve delayed inputs. Otherwise, returns input .","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/get_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get Choices — get_choices","text":"","code":"get_choices(choices)"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/get_choices.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get Choices — get_choices","text":"choices object contains choices.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/get_choices.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get Choices — get_choices","text":"vector choices.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/include_css_files.html","id":null,"dir":"Reference","previous_headings":"","what":"Include CSS files from /inst/css/ package directory to application header — include_css_files","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"system.file used access files packages, work devtools. Therefore, redefine method package needed. Thus, export method.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/include_css_files.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"","code":"include_css_files(pattern = \"*\")"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/include_css_files.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"pattern (character) pattern files included","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/include_css_files.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"HTML code includes CSS files","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/label_aevar.html","id":null,"dir":"Reference","previous_headings":"","what":"Automatically switch variable labels for standard AE variables in AE osprey functions  — label_aevar","title":"Automatically switch variable labels for standard AE variables in AE osprey functions  — label_aevar","text":"Automatically switch variable labels standard AE variables AE osprey functions","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/label_aevar.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Automatically switch variable labels for standard AE variables in AE osprey functions  — label_aevar","text":"","code":"label_aevar(x)"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/label_aevar.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Automatically switch variable labels for standard AE variables in AE osprey functions  — label_aevar","text":"x variable key","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/name_ci.html","id":null,"dir":"Reference","previous_headings":"","what":"retrieve name of ci method — name_ci","title":"retrieve name of ci method — name_ci","text":"retrieve name ci method retrieve detailed name ci method","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/name_ci.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"retrieve name of ci method — name_ci","text":"","code":"name_ci(x = ci_choices)  name_ci(x = ci_choices)"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/name_ci.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"retrieve name of ci method — name_ci","text":"x ci method retrieve name","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/plot_decorate_output.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper function to plot decorated output UI — plot_decorate_output","text":"","code":"plot_decorate_output(id)"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/plot_decorate_output.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper function to plot decorated output UI — plot_decorate_output","text":"id (character) id element","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/quick_filter.html","id":null,"dir":"Reference","previous_headings":"","what":"Utility function for quick filter  — quick_filter","title":"Utility function for quick filter  — quick_filter","text":"Utility function quick filter","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/quick_filter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Utility function for quick filter  — quick_filter","text":"","code":"quick_filter(filter_opt, ANL)"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/quick_filter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Utility function for quick filter  — quick_filter","text":"filter_opt vector string names flag variable filter (keep Y rows ) ANL input dataset","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/quick_filter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Utility function for quick filter  — quick_filter","text":"filtered dataframe","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/quick_filter.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Utility function for quick filter  — quick_filter","text":"Carolyn Zhang (zhanc107) carolyn.zhang@duke.edu","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/shared_params.html","id":null,"dir":"Reference","previous_headings":"","what":"Shared Parameters — shared_params","title":"Shared Parameters — shared_params","text":"Contains arguments shared multiple functions package avoid repetition using inheritParams.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/shared_params.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shared Parameters — shared_params","text":"plot_height (numeric) optional vector length three c(value, min, max). Specifies height main plot. plot_width (numeric) optional vector length three c(value, min, max). Specifies width main plot renders slider plot interactively adjust plot width. label (character) module label teal app. Please note module developed based ADaM data structure ADaM variables.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/srv_g_decorate.html","id":null,"dir":"Reference","previous_headings":"","what":"Helper server function to decorate plot output — srv_g_decorate","title":"Helper server function to decorate plot output — srv_g_decorate","text":"used tm_g_ae_oview() tm_g_events_term_id().","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/srv_g_decorate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper server function to decorate plot output — srv_g_decorate","text":"","code":"srv_g_decorate(   id,   plot_id = \"out\",   plt = reactive(NULL),   plot_height,   plot_width )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/srv_g_decorate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper server function to decorate plot output — srv_g_decorate","text":"id (character) id module plot_id (character) id plot output plt (reactive) reactive object graph object plot_height (numeric) optional vector length three c(value, min, max). Specifies height main plot. plot_width (numeric) optional vector length three c(value, min, max). Specifies width main plot renders slider plot interactively adjust plot width.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/teal.osprey-package.html","id":null,"dir":"Reference","previous_headings":"","what":"teal.osprey: teal modules for 'osprey' — teal.osprey-package","title":"teal.osprey: teal modules for 'osprey' — teal.osprey-package","text":"teal.osprey provides community contributed teal modules analysis functions osprey package. See package website. enables teal app developers easily create applications making use osprey analysis functions.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/teal.osprey-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"teal.osprey: teal modules for 'osprey' — teal.osprey-package","text":"Maintainer: Nina Qi qit3@gene.com Authors: Dawid Kaledkowski dawid.kaledkowski@roche.com Chendi Liao chendi.liao@roche.com Liming Li liming.li@roche.com Konrad Pagacz contributors: Molly [contributor] Carolyn Zhang [contributor] Tina Cho [contributor] F. Hoffmann-La Roche AG [copyright holder, funder]","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_oview.html","id":null,"dir":"Reference","previous_headings":"","what":"Teal module for the AE overview — tm_g_ae_oview","title":"Teal module for the AE overview — tm_g_ae_oview","text":"Display AE overview plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_oview.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Teal module for the AE overview — tm_g_ae_oview","text":"","code":"tm_g_ae_oview(   label,   dataname,   arm_var,   flag_var_anl,   fontsize = c(5, 3, 7),   plot_height = c(600L, 200L, 2000L),   plot_width = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_oview.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Teal module for the AE overview — tm_g_ae_oview","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). arm_var (choices_selected) object available choices pre-selected option variable names can used arm_var. See teal.transform::choices_selected() details. Column arm_var dataname factor. flag_var_anl (teal.transform::choices_selected) choices_selected object variables used count adverse event sub-groups (e.g. Serious events, Related events, etc.) fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_oview.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Teal module for the AE overview — tm_g_ae_oview","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_oview.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Teal module for the AE overview — tm_g_ae_oview","text":"","code":"data <- teal_data() |>   within({     ADSL <- rADSL     ADAE <- rADAE     add_event_flags <- function(dat) {       dat <- dat |>         mutate(           TMPFL_SER = AESER == \"Y\",           TMPFL_REL = AEREL == \"Y\",           TMPFL_GR5 = AETOXGR == \"5\",           AEREL1 = (AEREL == \"Y\" & ACTARM == \"A: Drug X\"),           AEREL2 = (AEREL == \"Y\" & ACTARM == \"B: Placebo\")         )       labels <- c(         \"Serious AE\", \"Related AE\", \"Grade 5 AE\",         \"AE related to A: Drug X\", \"AE related to B: Placebo\"       )       cols <- c(\"TMPFL_SER\", \"TMPFL_REL\", \"TMPFL_GR5\", \"AEREL1\", \"AEREL2\")       for (i in seq_along(labels)) {         attr(dat[[cols[i]]], \"label\") <- labels[i]       }       dat     }     ADAE <- add_event_flags(ADAE)   })  datanames(data) <- c(\"ADSL\", \"ADAE\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  ADAE <- data[[\"ADAE\"]]  app <- init(   data = data,   modules = modules(     tm_g_ae_oview(       label = \"AE Overview\",       dataname = \"ADAE\",       arm_var = choices_selected(         selected = \"ACTARM\",         choices = c(\"ACTARM\", \"ACTARMCD\")       ),       flag_var_anl = choices_selected(         selected = \"AEREL1\",         choices = variable_choices(           ADAE,           c(\"TMPFL_SER\", \"TMPFL_REL\", \"TMPFL_GR5\", \"AEREL1\", \"AEREL2\")         ),       ),       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_ae_oview #> Warning: 'package:teal.osprey' may not be available when loading #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_sub.html","id":null,"dir":"Reference","previous_headings":"","what":"teal module for the AE by subgroups — tm_g_ae_sub","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"Display AE subgroups plot teal module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_sub.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"","code":"tm_g_ae_sub(   label,   dataname,   arm_var,   group_var,   plot_height = c(600L, 200L, 2000L),   plot_width = NULL,   fontsize = c(5, 3, 7) )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_sub.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). arm_var (choices_selected) object available choices pre-selected option variable names can used arm_var. See teal.transform::choices_selected() details. Column arm_var dataname factor. group_var (choices_selected) subgroups variables. See teal.transform::choices_selected() details. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_sub.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_sub.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"Liming Li (Lil128) liming.li@roche.com Molly (hey59) hey59@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_ae_sub.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"teal module for the AE by subgroups — tm_g_ae_sub","text":"","code":"# Example using stream (ADaM) dataset data <- teal_data() |>   within({     ADSL <- rADSL     ADAE <- rADAE   })  datanames(data) <- c(\"ADSL\", \"ADAE\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_ae_sub(       label = \"AE by Subgroup\",       dataname = \"ADAE\",       arm_var = choices_selected(         selected = \"ACTARMCD\",         choices = c(\"ACTARM\", \"ACTARMCD\")       ),       group_var = choices_selected(         selected = c(\"SEX\", \"REGION1\", \"RACE\"),         choices = c(\"SEX\", \"REGION1\", \"RACE\")       ),       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_ae_sub #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_butterfly.html","id":null,"dir":"Reference","previous_headings":"","what":"Butterfly plot Teal Module — tm_g_butterfly","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"Display butterfly plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_butterfly.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"","code":"tm_g_butterfly(   label,   dataname,   filter_var = NULL,   right_var,   left_var,   category_var,   color_by_var,   count_by_var,   facet_var = NULL,   sort_by_var = teal.transform::choices_selected(selected = \"count\", choices = c(\"count\",     \"alphabetical\")),   legend_on = TRUE,   plot_height = c(600L, 200L, 2000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_butterfly.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). filter_var (choices_selected) variable name data filter, please see details regarding expected values, default isNULL.choices vector filter_var choices, default NULL right_var (choices_selected) dichotomization variable right side left_var (choices_selected) dichotomization variable left side category_var (choices_selected) category (y axis) variable color_by_var (choices_selected) variable defines color blocks within bar count_by_var (choices_selected) variable defines x axis calculated facet_var (choices_selected) variable row facets sort_by_var (choices_selected) argument order class term elements table, default \"count\" legend_on (boolean) value whether legend displayed plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_butterfly.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_butterfly.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"filter_var option designed work conjunction filtering function provided teal (encoding panel right hand side shiny app). can used quick access predefined subsets domain datasets (subject-level dataset) used analysis, denoted value \"Y\". variable within filter_var_choices expected contain values either \"Y\" \"N\". multiple variables selected filter_var, observations \"Y\" value every selected variables used subsequent analysis. Flag variables (ADaM datasets) can used directly filter.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_butterfly.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"Carolyn Zhang (zhanc107) carolyn.zhang@duke.edu Chendi Liao (liaoc10) chendi.liao@roche.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_butterfly.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Butterfly plot Teal Module — tm_g_butterfly","text":"","code":"# Example using stream (ADaM) dataset data <- teal_data() |>   within({     library(dplyr)     set.seed(23)     ADSL <- rADSL     ADAE <- rADAE     ADSL <- mutate(ADSL, DOSE = paste(sample(1:3, n(), replace = TRUE), \"UG\"))     ADAE <- mutate(       ADAE,       flag1 = ifelse(AETOXGR == 1, 1, 0),       flag2 = ifelse(AETOXGR == 2, 1, 0),       flag3 = ifelse(AETOXGR == 3, 1, 0),       flag1_filt = rep(\"Y\", n())     )   })  datanames(data) <- c(\"ADSL\", \"ADAE\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_butterfly(       label = \"Butterfly Plot\",       dataname = \"ADAE\",       right_var = choices_selected(         selected = \"SEX\",         choices = c(\"SEX\", \"ARM\", \"RACE\")       ),       left_var = choices_selected(         selected = \"RACE\",         choices = c(\"SEX\", \"ARM\", \"RACE\")       ),       category_var = choices_selected(         selected = \"AEBODSYS\",         choices = c(\"AEDECOD\", \"AEBODSYS\")       ),       color_by_var = choices_selected(         selected = \"AETOXGR\",         choices = c(\"AETOXGR\", \"None\")       ),       count_by_var = choices_selected(         selected = \"# of patients\",         choices = c(\"# of patients\", \"# of AEs\")       ),       facet_var = choices_selected(         selected = NULL,         choices = c(\"RACE\", \"SEX\", \"ARM\")       ),       sort_by_var = choices_selected(         selected = \"count\",         choices = c(\"count\", \"alphabetical\")       ),       legend_on = TRUE,       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_butterfly #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_events_term_id.html","id":null,"dir":"Reference","previous_headings":"","what":"Events by Term Plot Teal Module — tm_g_events_term_id","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"Display Events Term plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_events_term_id.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"","code":"tm_g_events_term_id(   label,   dataname,   term_var,   arm_var,   fontsize = c(5, 3, 7),   plot_height = c(600L, 200L, 2000L),   plot_width = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_events_term_id.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). term_var teal.transform::choices_selected object available choices pre-selected option names can used specify term events arm_var (choices_selected) object available choices pre-selected option variable names can used arm_var. See teal.transform::choices_selected() details. Column arm_var dataname factor. fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_events_term_id.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_events_term_id.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"Liming Li (lil128) liming.li@roche.com Molly (hey59) hey59@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_events_term_id.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Events by Term Plot Teal Module — tm_g_events_term_id","text":"","code":"data <- teal_data() |>   within({     ADSL <- rADSL     ADAE <- rADAE   })  datanames(data) <- c(\"ADSL\", \"ADAE\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_events_term_id(       label = \"Common AE\",       dataname = \"ADAE\",       term_var = choices_selected(         selected = \"AEDECOD\",         choices = c(           \"AEDECOD\", \"AETERM\",           \"AEHLT\", \"AELLT\", \"AEBODSYS\"         )       ),       arm_var = choices_selected(         selected = \"ACTARMCD\",         choices = c(\"ACTARM\", \"ACTARMCD\")       ),       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_events_term_id #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_heat_bygrade.html","id":null,"dir":"Reference","previous_headings":"","what":"Teal module for the heatmap by grade — tm_g_heat_bygrade","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"Display heatmap grade shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_heat_bygrade.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"","code":"tm_g_heat_bygrade(   label,   sl_dataname,   ex_dataname,   ae_dataname,   cm_dataname = NA,   id_var,   visit_var,   ongo_var,   anno_var,   heat_var,   conmed_var = NULL,   fontsize = c(5, 3, 7),   plot_height = c(600L, 200L, 2000L),   plot_width = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_heat_bygrade.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"label (character(1)) menu item label module teal app. sl_dataname (character) subject level dataset name, needs available list passed data argument teal::init() ex_dataname (character) exposures dataset name, needs available list passed data argument teal::init() ae_dataname (character) adverse events dataset name, needs available list passed data argument teal::init() cm_dataname (character) concomitant medications dataset name, needs available list passed data argument teal::init()  specify NA concomitant medications data available id_var (choices_seleced) unique subject ID variable visit_var (choices_seleced) analysis visit variable ongo_var (choices_seleced) study ongoing status variable. variable derived logical variable. Usually can derived EOSSTT. anno_var (choices_seleced) annotation variable heat_var (choices_seleced) heatmap variable conmed_var (choices_seleced) concomitant medications variable, specify NA concomitant medications data available fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot. plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_heat_bygrade.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_heat_bygrade.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Teal module for the heatmap by grade — tm_g_heat_bygrade","text":"","code":"data <- teal_data() |>   within({     library(dplyr)     ADSL <- rADSL %>% slice(1:30)     ADEX <- rADEX %>% filter(USUBJID %in% ADSL$USUBJID)     ADAE <- rADAE %>% filter(USUBJID %in% ADSL$USUBJID)     ADCM <- rADCM %>% filter(USUBJID %in% ADSL$USUBJID)     # This preprocess is only to force legacy standard on ADCM     ADCM <- ADCM %>%       select(-starts_with(\"ATC\")) %>%       unique()     # function to derive AVISIT from ADEX     add_visit <- function(data_need_visit) {       visit_dates <- ADEX %>%         filter(PARAMCD == \"DOSE\") %>%         distinct(USUBJID, AVISIT, ASTDTM) %>%         group_by(USUBJID) %>%         arrange(ASTDTM) %>%         mutate(next_vis = lead(ASTDTM), is_last = ifelse(is.na(next_vis), TRUE, FALSE)) %>%         rename(this_vis = ASTDTM)       data_visit <- data_need_visit %>%         select(USUBJID, ASTDTM) %>%         left_join(visit_dates, by = \"USUBJID\") %>%         filter(ASTDTM > this_vis & (ASTDTM < next_vis | is_last == TRUE)) %>%         left_join(data_need_visit) %>%         distinct()       return(data_visit)     }     # derive AVISIT for ADAE and ADCM     ADAE <- add_visit(ADAE)     ADCM <- add_visit(ADCM)     # derive ongoing status variable for ADEX     ADEX <- ADEX %>%       filter(PARCAT1 == \"INDIVIDUAL\") %>%       mutate(ongo_status = (EOSSTT == \"ONGOING\"))   })  datanames(data) <- c(\"ADSL\", \"ADEX\", \"ADAE\", \"ADCM\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  ADCM <- data[[\"ADCM\"]]  app <- init(   data = data,   modules = modules(     tm_g_heat_bygrade(       label = \"Heatmap by grade\",       sl_dataname = \"ADSL\",       ex_dataname = \"ADEX\",       ae_dataname = \"ADAE\",       cm_dataname = \"ADCM\",       id_var = choices_selected(         selected = \"USUBJID\",         choices = c(\"USUBJID\", \"SUBJID\")       ),       visit_var = choices_selected(         selected = \"AVISIT\",         choices = c(\"AVISIT\")       ),       ongo_var = choices_selected(         selected = \"ongo_status\",         choices = c(\"ongo_status\")       ),       anno_var = choices_selected(         selected = c(\"SEX\", \"COUNTRY\"),         choices = c(\"SEX\", \"COUNTRY\", \"USUBJID\")       ),       heat_var = choices_selected(         selected = \"AETOXGR\",         choices = c(\"AETOXGR\")       ),       conmed_var = choices_selected(         selected = \"CMDECOD\",         choices = c(\"CMDECOD\")       ),       plot_height = c(600, 200, 2000)     )   ) ) #> Initializing tm_g_heat_bygrade #> Warning: 'package:teal.osprey' may not be available when loading #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_patient_profile.html","id":null,"dir":"Reference","previous_headings":"","what":"Patient Profile plot teal module — tm_g_patient_profile","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"Display patient profile plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_patient_profile.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"","code":"tm_g_patient_profile(   label = \"Patient Profile Plot\",   patient_id,   sl_dataname,   ex_dataname = NA,   ae_dataname = NA,   rs_dataname = NA,   cm_dataname = NA,   lb_dataname = NA,   sl_start_date,   ex_var = NULL,   ae_var = NULL,   ae_line_col_var = NULL,   ae_line_col_opt = NULL,   rs_var = NULL,   cm_var = NULL,   lb_var = NULL,   x_limit = \"-28, 365\",   plot_height = c(1200L, 400L, 5000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_patient_profile.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"label (character(1)) menu item label module teal app. patient_id (choices_seleced) unique subject ID variable sl_dataname (character) subject level dataset name, needs available list passed data argument teal::init() ex_dataname, ae_dataname, rs_dataname, cm_dataname, lb_dataname (character(1)) names exposure, adverse events, response, concomitant medications, labs datasets, respectively; must available list passed data argument teal::init() set NA (default) omit analysis sl_start_date choices_selected study start date variable, usually set treatment start date randomization date ex_var choices_selected exposure variable plot line  leave unspecified set NULL exposure data available ae_var choices_selected adverse event variable plot line  leave unspecified set NULL adverse events data available ae_line_col_var choices_selected variable coloring AE lines  leave unspecified set NULL adverse events data available ae_line_col_opt aesthetic values map color values (named vector map color values name). NULL, please make sure contains possible values ae_line_col_var values.  leave unspecified set NULL adverse events data available rs_var choices_selected response variable plot line  leave unspecified set NULL response data available cm_var choices_selected concomitant medication variable plot line  leave unspecified set NULL concomitant medications data available lb_var choices_selected lab variable plot line  leave unspecified set NULL labs data available x_limit single character string two numbers separated comma indicating x-axis limit, default \"-28, 365\" plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_patient_profile.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_patient_profile.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"patient profile module plots different domains one plot, study day (x-axis) derived consistency based start date user's choice app (example, ADSL.RANDDT ADSL.TRTSDT): ADAE, ADEX, ADCM, study day based ASTDT /AENDT reference start date ADRS ADLB, study day based ADT reference start date","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_patient_profile.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"Xuefeng Hou (houx14) houx14@gene.com Tina Cho (chot) tina.cho@roche.com Molly (hey59) hey59@gene.com Ting Qi (qit3) qit3@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_patient_profile.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Patient Profile plot teal module — tm_g_patient_profile","text":"","code":"data <- teal_data() |>   within({     ADSL <- rADSL     ADAE <- rADAE %>% mutate(ASTDT = as.Date(ASTDTM), AENDT = as.Date(AENDTM))     ADCM <- rADCM %>% mutate(ASTDT = as.Date(ASTDTM), AENDT = as.Date(AENDTM))     # The step below is to pre-process ADCM to legacy standard     ADCM <- ADCM %>%       select(-starts_with(\"ATC\")) %>%       unique()     ADRS <- rADRS %>% mutate(ADT = as.Date(ADTM))     ADEX <- rADEX %>% mutate(ASTDT = as.Date(ASTDTM), AENDT = as.Date(AENDTM))     ADLB <- rADLB %>% mutate(ADT = as.Date(ADTM), LBSTRESN = as.numeric(LBSTRESC))   })  datanames(data) <- c(\"ADSL\", \"ADAE\", \"ADCM\", \"ADRS\", \"ADEX\", \"ADLB\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  ADSL <- data[[\"ADSL\"]]  app <- init(   data = data,   modules = modules(     tm_g_patient_profile(       label = \"Patient Profile Plot\",       patient_id = choices_selected(         choices = unique(ADSL$USUBJID),         selected = unique(ADSL$USUBJID)[1]       ),       sl_dataname = \"ADSL\",       ex_dataname = \"ADEX\",       ae_dataname = \"ADAE\",       rs_dataname = \"ADRS\",       cm_dataname = \"ADCM\",       lb_dataname = \"ADLB\",       sl_start_date = choices_selected(         selected = \"TRTSDTM\",         choices = c(\"TRTSDTM\", \"RANDDT\")       ),       ex_var = choices_selected(         selected = \"PARCAT2\",         choices = \"PARCAT2\"       ),       ae_var = choices_selected(         selected = \"AEDECOD\",         choices = c(\"AEDECOD\", \"AESOC\")       ),       ae_line_col_var = choices_selected(         selected = \"AESER\",         choices = c(\"AESER\", \"AEREL\")       ),       ae_line_col_opt = c(\"Y\" = \"red\", \"N\" = \"blue\"),       rs_var = choices_selected(         selected = \"PARAMCD\",         choices = \"PARAMCD\"       ),       cm_var = choices_selected(         selected = \"CMDECOD\",         choices = c(\"CMDECOD\", \"CMCAT\")       ),       lb_var = choices_selected(         selected = \"LBTESTCD\",         choices = c(\"LBTESTCD\", \"LBCAT\")       ),       x_limit = \"-28, 750\",       plot_height = c(1200, 400, 5000)     )   ) ) #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_spiderplot.html","id":null,"dir":"Reference","previous_headings":"","what":"Spider plot Teal Module — tm_g_spiderplot","title":"Spider plot Teal Module — tm_g_spiderplot","text":"Display spider plot shiny module","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_spiderplot.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Spider plot Teal Module — tm_g_spiderplot","text":"","code":"tm_g_spiderplot(   label,   dataname,   paramcd,   x_var,   y_var,   marker_var,   line_colorby_var,   xfacet_var = NULL,   yfacet_var = NULL,   vref_line = NULL,   href_line = NULL,   anno_txt_var = TRUE,   legend_on = FALSE,   plot_height = c(600L, 200L, 2000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_spiderplot.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Spider plot Teal Module — tm_g_spiderplot","text":"label (character(1)) menu item label module teal app. dataname (character(1)) analysis data used teal module, needs available list passed data argument teal::init(). paramcd (character(1) choices_selected) variable value designating studied parameter. See teal.transform::choices_selected() details. x_var x-axis variables y_var y-axis variables marker_var variable dictates marker symbol line_colorby_var variable dictates line color xfacet_var variable x facets yfacet_var variable y facets vref_line vertical reference lines href_line horizontal reference lines anno_txt_var annotation text legend_on boolean value whether legend displayed plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_spiderplot.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Spider plot Teal Module — tm_g_spiderplot","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_spiderplot.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Spider plot Teal Module — tm_g_spiderplot","text":"Carolyn Zhang (zhanc107) carolyn.zhang@duke.edu Chendi Liao (liaoc10) chendi.liao@roche.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_spiderplot.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Spider plot Teal Module — tm_g_spiderplot","text":"","code":"# Example using stream (ADaM) dataset data <- teal_data() |>   within({     ADSL <- rADSL     ADTR <- rADTR   })  datanames(data) <- c(\"ADSL\", \"ADTR\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_spiderplot(       label = \"Spider plot\",       dataname = \"ADTR\",       paramcd = choices_selected(         choices = \"SLDINV\",         selected = \"SLDINV\"       ),       x_var = choices_selected(         choices = \"ADY\",         selected = \"ADY\"       ),       y_var = choices_selected(         choices = c(\"PCHG\", \"CHG\", \"AVAL\"),         selected = \"PCHG\"       ),       marker_var = choices_selected(         choices = c(\"SEX\", \"RACE\", \"USUBJID\"),         selected = \"SEX\"       ),       line_colorby_var = choices_selected(         choices = c(\"SEX\", \"USUBJID\", \"RACE\"),         selected = \"SEX\"       ),       xfacet_var = choices_selected(         choices = c(\"SEX\", \"ARM\"),         selected = \"SEX\"       ),       yfacet_var = choices_selected(         choices = c(\"SEX\", \"ARM\"),         selected = \"ARM\"       ),       vref_line = \"10, 37\",       href_line = \"-20, 0\"     )   ) ) #> Initializing tm_g_spiderplot #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_swimlane.html","id":null,"dir":"Reference","previous_headings":"","what":"Teal Module for Swimlane Plot — tm_g_swimlane","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"teal module generates swimlane plot (bar plot markers) ADaM data","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_swimlane.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"","code":"tm_g_swimlane(   label,   dataname,   bar_var,   bar_color_var = NULL,   sort_var = NULL,   marker_pos_var = NULL,   marker_shape_var = NULL,   marker_shape_opt = NULL,   marker_color_var = NULL,   marker_color_opt = NULL,   anno_txt_var = NULL,   vref_line = NULL,   plot_height = c(1200L, 400L, 5000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL,   x_label = \"Time from First Treatment (Day)\" )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_swimlane.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"label (character(1)) menu item label module teal app. dataname analysis data used plotting, needs available list passed data argument teal::init(). markers plotted module, \"ADSL\" input. markers plotted, data name marker data input bar_var teal.transform::choices_selected subject-level numeric variable dataset plot bar length bar_color_var teal.transform::choices_selected color variable (subject-level) sort_var choices_selected sort variable (subject-level) marker_pos_var teal.transform::choices_selected variable marker position marker data (Note: make sure marker position relative start day bar length variable bar_var marker_shape_var teal.transform::choices_selected marker shape variable marker data marker_shape_opt aesthetic values map shape values (named vector map shape values name). NULL, please make sure contains possible values marker_shape_var values, otherwise shape assigned ggplot default marker_color_var marker color variable marker data marker_color_opt aesthetic values map color values (named vector map color values name). NULL, please make sure contains possible values marker_color_var values, otherwise color assigned ggplot default anno_txt_var character vector subject-level variable names selected annotation vref_line vertical reference lines plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful. x_label label x axis","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_swimlane.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_swimlane.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"Ting Qi (qit3) qit3@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_swimlane.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Teal Module for Swimlane Plot — tm_g_swimlane","text":"","code":"# Example using stream (ADaM) dataset data <- teal_data() |>   within({     library(dplyr)     ADSL <- rADSL %>%       mutate(TRTDURD = as.integer(TRTEDTM - TRTSDTM) + 1) %>%       filter(STRATA1 == \"A\" & ARMCD == \"ARM A\")     ADRS <- rADRS %>%       filter(PARAMCD == \"LSTASDI\" & DCSREAS == \"Death\") %>%       mutate(AVALC = DCSREAS, ADY = EOSDY) %>%       rbind(rADRS %>% filter(PARAMCD == \"OVRINV\" & AVALC != \"NE\")) %>%       arrange(USUBJID)   })  datanames(data) <- c(\"ADSL\", \"ADRS\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  ADSL <- data[[\"ADSL\"]] ADRS <- data[[\"ADRS\"]]  app <- init(   data = data,   modules = modules(     tm_g_swimlane(       label = \"Swimlane Plot\",       dataname = \"ADRS\",       bar_var = choices_selected(         selected = \"TRTDURD\",         choices = c(\"TRTDURD\", \"EOSDY\")       ),       bar_color_var = choices_selected(         selected = \"EOSSTT\",         choices = c(\"EOSSTT\", \"ARM\", \"ARMCD\", \"ACTARM\", \"ACTARMCD\", \"SEX\")       ),       sort_var = choices_selected(         selected = \"ACTARMCD\",         choices = c(\"USUBJID\", \"SITEID\", \"ACTARMCD\", \"TRTDURD\")       ),       marker_pos_var = choices_selected(         selected = \"ADY\",         choices = c(\"ADY\")       ),       marker_shape_var = choices_selected(         selected = \"AVALC\",         c(\"AVALC\", \"AVISIT\")       ),       marker_shape_opt = c(\"CR\" = 16, \"PR\" = 17, \"SD\" = 18, \"PD\" = 15, \"Death\" = 8),       marker_color_var = choices_selected(         selected = \"AVALC\",         choices = c(\"AVALC\", \"AVISIT\")       ),       marker_color_opt = c(         \"CR\" = \"green\", \"PR\" = \"blue\", \"SD\" = \"goldenrod\",         \"PD\" = \"red\", \"Death\" = \"black\"       ),       vref_line = c(30, 60),       anno_txt_var = choices_selected(         selected = c(\"ACTARM\", \"SEX\"),         choices = c(           \"ARM\", \"ARMCD\", \"ACTARM\", \"ACTARMCD\", \"AGEGR1\",           \"SEX\", \"RACE\", \"COUNTRY\", \"DCSREAS\", \"DCSREASP\"         )       )     )   ) ) #> Initializing tm_g_swimlane #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_waterfall.html","id":null,"dir":"Reference","previous_headings":"","what":"Teal Module for Waterfall Plot — tm_g_waterfall","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"teal module generates waterfall plot ADaM data","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_waterfall.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"","code":"tm_g_waterfall(   label,   dataname_tr = \"ADTR\",   dataname_rs = \"ADRS\",   bar_paramcd,   bar_var,   bar_color_var,   bar_color_opt = NULL,   sort_var,   add_label_var_sl,   add_label_paramcd_rs,   anno_txt_var_sl,   anno_txt_paramcd_rs,   facet_var,   ytick_at = 20,   href_line = NULL,   gap_point_val = NULL,   show_value = TRUE,   plot_height = c(1200L, 400L, 5000L),   plot_width = NULL,   pre_output = NULL,   post_output = NULL )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_waterfall.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"label (character(1)) menu item label module teal app. dataname_tr tumor burden analysis data used teal module plot bar height, needs available list passed data argument teal::init() dataname_rs response analysis data used teal module label response parameters, needs available list passed data argument teal::init() bar_paramcd choices_selected parameter tumor burden data plotted bar height bar_var choices_selected numeric variable dataset plot bar height, e.g., PCHG bar_color_var choices_selected color variable (subject level), None corresponds NULL bar_color_opt aesthetic values map color values (named vector map color values name). NULL, please make sure contains possible values bar_color_var values, otherwise color assigned ggplot default, please note NULL needs specified case sort_var choices_selected sort variable (subject level), None corresponds NULL add_label_var_sl choices_selected add label bars (subject level), None corresponds NULL add_label_paramcd_rs choices_selected add label bars (response dataset), None corresponds NULL. least one add_label_var_sl add_label_paramcd_rs needs NULL anno_txt_var_sl choices_selected subject level variables displayed annotation table, default NULL anno_txt_paramcd_rs choices_selected analysis dataset variables displayed annotation table, default NULL facet_var choices_selected facet variable (subject level), None corresponds NULL ytick_at bar height axis interval, default 20 href_line numeric vector plot horizontal reference lines, default NULL gap_point_val singular numeric value adding bar break bars significantly higher others, default NULL show_value boolean whether value bar height shown, default TRUE plot_height (numeric(3)) vector indicate default value, minimum maximum values. plot_width (numeric(3)) vector indicate default value, minimum maximum values. pre_output (shiny.tag) optional, text placed output put output context. example title. post_output (shiny.tag) optional, text placed output put output context. example shiny::helpText() elements useful.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_waterfall.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"teal::module() object.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_waterfall.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"Ting Qi (qit3) qit3@gene.com houx14 houx14@gene.com","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/tm_g_waterfall.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Teal Module for Waterfall Plot — tm_g_waterfall","text":"","code":"data <- teal_data() |>   within({     ADSL <- rADSL     ADRS <- rADRS     ADTR <- rADTR     ADSL$SEX <- factor(ADSL$SEX, levels = unique(ADSL$SEX))   })  datanames(data) <- c(\"ADSL\", \"ADTR\", \"ADRS\") join_keys(data) <- default_cdisc_join_keys[datanames(data)]  app <- init(   data = data,   modules = modules(     tm_g_waterfall(       label = \"Waterfall\",       dataname_tr = \"ADTR\",       dataname_rs = \"ADRS\",       bar_paramcd = choices_selected(c(\"SLDINV\"), \"SLDINV\"),       bar_var = choices_selected(c(\"PCHG\", \"AVAL\"), \"PCHG\"),       bar_color_var = choices_selected(c(\"ARMCD\", \"SEX\"), \"ARMCD\"),       bar_color_opt = NULL,       sort_var = choices_selected(c(\"ARMCD\", \"SEX\"), NULL),       add_label_var_sl = choices_selected(c(\"SEX\", \"EOSDY\"), NULL),       add_label_paramcd_rs = choices_selected(c(\"BESRSPI\", \"OBJRSPI\"), NULL),       anno_txt_var_sl = choices_selected(c(\"SEX\", \"ARMCD\", \"BMK1\", \"BMK2\"), NULL),       anno_txt_paramcd_rs = choices_selected(c(\"BESRSPI\", \"OBJRSPI\"), NULL),       facet_var = choices_selected(c(\"SEX\", \"ARMCD\", \"STRATA1\", \"STRATA2\"), NULL),       href_line = \"-30, 20\"     )   ) ) #> Initializing tm_g_waterfall #> Initializing reporter_previewer_module if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/ui_g_decorate.html","id":null,"dir":"Reference","previous_headings":"","what":"Helper UI function to decorate plot output UI — ui_g_decorate","title":"Helper UI function to decorate plot output UI — ui_g_decorate","text":"used tm_g_ae_oview() tm_g_events_term_id().","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/ui_g_decorate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper UI function to decorate plot output UI — ui_g_decorate","text":"","code":"ui_g_decorate(   id,   titles = \"Titles\",   footnotes = \"footnotes\",   fontsize = c(5, 4, 11) )"},{"path":"https://insightsengineering.github.io/teal.osprey/main/reference/ui_g_decorate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper UI function to decorate plot output UI — ui_g_decorate","text":"id (character) id module. set NULL want make identical module called . titles (character) default titles footnotes (character) default footnotes fontsize (numeric(1) numeric(3)) Defines initial possible range font-size. fontsize set teal.widgets::optionalSliderInputValMinMax() controls font-size output plot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-01169028","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.16.9028","title":"teal.osprey 0.1.16.9028","text":"Removed Show Warnings modals modules. Moved teal.data Suggests Imports. Changed examples cdisc_data() teal_data().","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"breaking-changes-0-1-16-9028","dir":"Changelog","previous_headings":"","what":"Breaking Changes","title":"teal.osprey 0.1.16.9028","text":"Adapted modules use teal_data objects.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"enhancements-0-1-16-9028","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.16.9028","text":"Added teal.logger functionality logging changes shiny inputs modules.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"miscellaneous-0-1-16-9028","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.16.9028","text":"Specified minimal version package dependencies.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-0116","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.16","title":"teal.osprey 0.1.16","text":"Removed scda package dependency examples. Fixed crash tm_g_heat_bygrade plotting Conmed. Added validation tm_g_spiderplot.R checks duplicates X Y facet variables. Improved input validation used teal::validate_inputs mechanism send validation messages output panel. Removed purrr dependencies. Added argument checks tm_g_patient_profile. Modified example apps use new teal_data join_keys solutions.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"breaking-changes-0-1-16","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.osprey 0.1.16","text":"Replaced chunks simpler qenv class. tm_xyz_srv modules datasets argument containing FilteredData replaced new argument data (tdata object) filter_panel_api (FilterPanelAPI). Updated arm_var point factor column ANL. can’t character column anymore. Removed redundant formal arguments tm_g_patient_profile.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"breaking-changes-0-1-15","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.osprey 0.1.15","text":"Soft deprecate function label_aevar().","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"enhancements-0-1-15","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.15","text":"Added teal.reporter modules. Updated shiny::validate calls shinyvalidate better UI overview. Implemented nestcolor slight refactoring tm_g_swimlane. Added nestcolor examples.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"miscellaneous-0-1-15","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.15","text":"Added names id parameter teal.code::chunks_push modules. Updated modules use datasets names suffix _FILTERED package works breaking changes teal.slice.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"enhancements-0-1-14","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.14","text":"Removed unneeded chunk evaluations tm_g_patient_profile module.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"miscellaneous-0-1-14","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.14","text":"Added template pkgdown site. Updated package authors.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"enhancements-0-1-13","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.13","text":"Added basic logging modules. label select input widget choose paramcd longer hard coded ADTR tm_g_spiderplot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"miscellaneous-0-1-13","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.13","text":"Rewrote module use moduleServer updated calls teal.devel modules also written use moduleServer. Replaced calls teal::root_modules teal::modules following deprecation teal::root_modules. Adjusted package imports take account changes teal framework. Functions imported packages now fully specified.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"breaking-changes-0-1-12","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.osprey 0.1.12","text":"Refactored tm_g_ae_oview remove flag variables generated module default replace parameter add_flag flag_var_anl.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"enhancements-0-1-12","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.12","text":"Added new parameter x_label allowing change label x axis tm_g_swimlane module plot. Updated tm_g_ae_sub longer displays label inputs group variables values selected.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"bug-fixes-0-1-12","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"teal.osprey 0.1.12","text":"Fixed bug tm_g_waterfall Tumor Burden Parameter UI element now respected.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"miscellaneous-0-1-12","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.12","text":"Updated R version requirement R >= 3.6. Removed function teal::keys examples tm_g_spiderplot tm_g_waterfall modules. Removed dependency test.nest package. Removed dependency utils.nest package replaced functions equivalents checkmate package.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-0111","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.11","title":"teal.osprey 0.1.11","text":"Updated LICENCE README new package references. Updated document tests scda synthetic data replace random.cdisc.data. Added error_on_lint: TRUE .lintr. Removed unnecessary importFrom statements. Updated tm_g_patient_profile module’s study days range accept infinite values. Fixed disappearing plots webpage zoom /.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"enhancements-0-1-10","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.10","text":"Added Shiny feature tm_g_swimlane prevent needless re-render output user completely provided inputs vertical lines widget.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"miscellaneous-0-1-10","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.10","text":"Altered Choose 2: inputs widget Encoding Panel independent Filtering Panel tm_g_butterfly. Updated warning message Tumor Burden Parameter selected tm_g_waterfall.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"bug-fixes-0-1-10","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"teal.osprey 0.1.10","text":"Fixed bug tm_g_butterfly displays filtering faceting widgets despite provided arguments.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"new-features-0-1-9","dir":"Changelog","previous_headings":"","what":"New features","title":"teal.osprey 0.1.9","text":"Added new teal module tm_g_heat_bygrade heatmap grade plot. Added new teal module tm_g_ae_sub AE subgroups plot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"bug-fixes-0-1-9","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"teal.osprey 0.1.9","text":"Fixed misleading validate message tm_g_ae_oview either Control Treatment variable filtered . Added validate statement output better error message left right dichotomization values filtered data.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"miscellaneous-0-1-9","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.9","text":"Improved reactivity dependencies across modules.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-018","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.8","title":"teal.osprey 0.1.8","text":"Added validation message dataset contain subjects control treatment arms tm_g_events_term_id. Improved validation message subject filtered dataset used tm_g_patient_profile. Fixed modules due changes plot_with_settings latest teal.devel release. Updated study day duration derivation tm_g_patient_profile.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"enhancements-0-1-7","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.osprey 0.1.7","text":"Added additional validation horizontal vertical reference lines tm_g_spider_plot.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"bug-fixes-0-1-7","dir":"Changelog","previous_headings":"","what":"Bug Fixes","title":"teal.osprey 0.1.7","text":"Fixed tm_g_patient_profile adverse event line color variable selected. Fixed issue unknown date format established minimum number observation threshold tm_g_patient_profile.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"miscellaneous-0-1-7","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.osprey 0.1.7","text":"Teal module AE overview summary table - can replaced teal.modules.clinical::tm_t_events_summary. Teal module AE summary table preferred terms - can replaced teal.modules.clinical::tm_t_events. Teal module AE summary table highest NCI-CTCAE grade - can replaced teal.modules.clinical::tm_t_events_by_grade. Teal module Disposition table - can replaced teal.modules.clinical::tm_t_summary. Moved code argument cdisc_dataset (cdisc_data) examples.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-016","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.6","title":"teal.osprey 0.1.6","text":"graph modules now accept plot_width argument specifies plot width renders slider adjust width interactively module. Replaced plot_with_height plot_with_settings module throughout package. Show R Code now produces code generating datasets needed current module, datasets included data argument teal::init. Evaluate chunks chunks_safe_eval rather chunks_eval.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-015","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.5","title":"teal.osprey 0.1.5","text":"Added new teal modules: Teal module events term summary plot. Teal module AE overview summary plot. Teal module patient profile plot","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-014","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.4","title":"teal.osprey 0.1.4","text":"Minor changes tests.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-013","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.3","title":"teal.osprey 0.1.3","text":"Technical release updated dependencies.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-012","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.2","title":"teal.osprey 0.1.2","text":"New waterfall module. Refactored due recent changes utils.nest.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-011","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.1","title":"teal.osprey 0.1.1","text":"Included test.nest tests. Fixed outdated modules according current teal functionality. Fixed documentation examples example_app.R. Simplified dependencies.","code":""},{"path":"https://insightsengineering.github.io/teal.osprey/main/news/index.html","id":"tealosprey-010","dir":"Changelog","previous_headings":"","what":"teal.osprey 0.1.0","title":"teal.osprey 0.1.0","text":"Teal module AE overview summary table. Teal module AE summary table preferred terms. Teal module AE summary table highest NCI-CTCAE grade. Teal module Disposition table. Teal module AE butterfly plot. Teal module Swimlane plot. Teal module Spider plot.","code":""}]