index.Rmd

---
title: "About reproducibility"
author: "inSileco Team"
output:
  xaringan::moon_reader:
    css: [default, rd.css, rd-font.css, "hygge"]
    lib_dir: assets
    seal: false
    nature:
      highlightStyle: dracula
      countIncrementalSlides: false
      beforeInit: "macros.js"
---


```{r setup, include = FALSE}
knitr::opts_chunk$set(
  comment = "#>",
  collapse = TRUE,
  warning = FALSE,
  message = FALSE,
  dev = "png",
  dpi = 108,
  fig.width = 6,
  fig.height = 4.5,
  fig.align = 'center',
  width = 120
)
options(htmltools.dir.version = FALSE, htmltools.preserve.raw = FALSE)
rfa <- function(...) icons::fontawesome(...)
emj <- function(...) emo::ji(...)
kig <- function(...) knitr::include_graphics(...)
```



class: title-slide, middle


## .font140[`r rfa("r-project")`eproducible Workflows]

<br>

.instructors[
  .font180[Increase Everyday Efficiency]
  <br><br><br>
  .authors140[David Beauchesne & Kevin Cazelles]
  <br><br>
  `r format(Sys.time(), '%B %d, %Y')`
  <br>
  .font200[
  [`r rfa("github")`](https://github.com/inSilecoInc/workshop_reproducibility)
  [`r rfa("database")`](https://github.com/inSilecoInc/workshop_reproducibility/raw/gh-pages/data_and_script.zip)
  <!-- [`r rfa("file-pdf")`](link_to_pdf_version) -->
  ]
]

<br>
<img src="img/logoW.png" width="140px"></img>

![deploy workshop](https://github.com/inSilecoInc/workshop_reproducibility/workflows/deploy%20workshop/badge.svg)

.instructors[Content under [`r rfa("creative-commons")` `r rfa("creative-commons-by")`](https://creativecommons.org/licenses/by/4.0/) unless otherwise specified. <br>Right banner based on a comic available at [phdcomics.com](http://phdcomics.com/comics/archive_print.php?comicid=1689).]




---

class: inverse, center, middle

# Learning objectives

![:custom_hr]()

## .font160[`r rfa("map")`  + `r rfa("r-project")`]


---

# Learning objectives

<br>

### 1. Understand the importance of reproducible research.

### 2. Understand how R can be useful for reproducible research.

### 3. Set up a minimal reproducible workflow.

### 4. Create a simple R Markdown document including a reproducible analysis.



<!-- PART 1  -->

```{r, child = "part1.Rmd" }
```


<!-- PART 2 -->

```{r, child = "part2.Rmd" }
```


<!-- PART 2 -->

```{r, child = "part3.Rmd" }
```


<!-- RESOURCES -->

```{r, child = "partResources.Rmd" }
```