Skip to content

Latest commit

 

History

History
33 lines (27 loc) · 1.26 KB

TrioMendelianErrors.md

File metadata and controls

33 lines (27 loc) · 1.26 KB

TrioMendelianErrors tool help

TrioMendelianErrors (2025_01-25-g1d2b52ea)

Determines mendelian error rate from a trio VCF.

Mandatory parameters:
  -vcf <file>       Multi-sample VCF or VCF.GZ file.
  -c <string>       Sample name of child in VCF.
  -f <string>       Sample name of father in VCF.
  -m <string>       Sample name of mother in VCF.

Optional parameters:
  -out <file>       Output text file. If unset, writes to STDOUT.
                    Default value: ''
  -min_dp <int>     Minimum depth in each sample.
                    Default value: '0'
  -min_qual <float> Minimum QUAL of variants.
                    Default value: '0'
  -debug            Enable debug output
                    Default value: 'false'

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

TrioMendelianErrors changelog

TrioMendelianErrors 2025_01-25-g1d2b52ea

2025-02-18 Initial version of the tool.

back to ngs-bits