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FastqDownsample.md

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FastqDownsample tool help

FastqDownsample (2024_08-110-g317f43b9)

Downsamples paired-end FASTQ files.

Mandatory parameters:
  -in1 <file>              Forward input gzipped FASTQ file(s).
  -in2 <file>              Reverse input gzipped FASTQ file(s).
  -percentage <float>      Percentage of reads to keep.
  -out1 <file>             Forward output gzipped FASTQ file.
  -out2 <file>             Reverse output gzipped FASTQ file.

Optional parameters:
  -test                    Test mode: fix random number generator seed and write kept read names to STDOUT.
                           Default value: 'false'
  -compression_level <int> Output FASTQ compression level from 1 (fastest) to 9 (best compression).
                           Default value: '1'

Special parameters:
  --help                   Shows this help and exits.
  --version                Prints version and exits.
  --changelog              Prints changeloge and exits.
  --tdx                    Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file]        Settings override file (no other settings files are used).

FastqDownsample changelog

FastqDownsample 2024_08-110-g317f43b9

2020-07-15 Initial version of this tool.

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