Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

SciJava Table outputs create new rows on error #310

Open
gselzer opened this issue Nov 12, 2024 · 0 comments
Open

SciJava Table outputs create new rows on error #310

gselzer opened this issue Nov 12, 2024 · 0 comments
Assignees
Labels
bug Something isn't working
Milestone

Comments

@gselzer
Copy link
Collaborator

gselzer commented Nov 12, 2024

I was running the BoneJ2 Use Case, and I noticed in one step my SciJava table added a new row. I've narrowed things down to the following reproducible steps:

  1. Run the Use Case up to (and including) the Fractal Dimension Command execution.
  2. Run the Surface Area Command as specified, but use the gaussian blur output instead. Eventually, you'll get an ImageJ2 popup (at least on Windows 😅 ) that says "Need a binary image"
  3. Run the Surface Area Command as specified, now using the right image. The output table now will have a second row, where the final column has garbage in the first row and the correct value in the second. The rest of the second row is nans:

image

Ideally, the table would not be making this second row. Ideally after the incorrect execution (which I kept doing because I mixed up the gaussed and threshold images a few times) the garbage value wouldn't be entered, or would just be overwritten when it's run correctly the next time.

I'm guessing that this is an issue upstream, but will have to do some digging to figure out where.

@gselzer gselzer added the bug Something isn't working label Nov 12, 2024
@gselzer gselzer added this to the 1.0.0 milestone Nov 12, 2024
@gselzer gselzer self-assigned this Nov 12, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

1 participant