diff --git a/src/vivarium_sodium_reduction/model_specifications/branches/scenarios.yaml b/src/vivarium_sodium_reduction/model_specifications/branches/scenarios.yaml index 06926da..614fa55 100644 --- a/src/vivarium_sodium_reduction/model_specifications/branches/scenarios.yaml +++ b/src/vivarium_sodium_reduction/model_specifications/branches/scenarios.yaml @@ -1,7 +1,6 @@ input_draw_count: 10 -random_seed_count: 5 +random_seed_count: 10 branches: -# TODO change to name of intervention - - placeholder_branch_name: - scenario: ['baseline'] + - relative_shift_intervention.diet_high_in_sodium.exposure: + shift_factor: [1.0, 0.95, 0.90, 0.85] diff --git a/src/vivarium_sodium_reduction/model_specifications/model_spec.yaml b/src/vivarium_sodium_reduction/model_specifications/model_spec.yaml index a1992bd..faac2bb 100644 --- a/src/vivarium_sodium_reduction/model_specifications/model_spec.yaml +++ b/src/vivarium_sodium_reduction/model_specifications/model_spec.yaml @@ -9,16 +9,17 @@ components: - SI('ischemic_stroke') - SI('intracerebral_hemorrhage') - SI('subarachnoid_hemorrhage') - - SI('chronic_kidney_disease') - SI('stomach_cancer') - #- SI('hypertensive_heart_disease') # need a PAF-of-1 model, this does not have incidence - # results: # need age_group for stratification + # - SI('chronic_kidney_disease') # no rr for SBP->CKD or any CKD subtype; TODO: must be a PAF-of-1 this for CKD due to HTN + #- SI('hypertensive_heart_disease') # TODO: a PAF-of-1 model, this does not have incidence + # results: # TODO: need age_group for stratification, # - DisabilityObserver() # - DiseaseObserver('ischemic_heart_disease') # - DiseaseObserver('ischemic_stroke') # - DiseaseObserver('intracerebral_hemorrhage') # - MortalityObserver() # # TODO: how do I observe the risk factors? + # TODO: figure out how to run psimulate vivarium_sodium_reduction.components.risks: - CorrelatedRisk('risk_factor.high_systolic_blood_pressure') - CorrelatedRisk('risk_factor.diet_high_in_sodium') @@ -29,8 +30,7 @@ components: - NonLogLinearRiskEffect('risk_factor.high_systolic_blood_pressure', 'cause.ischemic_stroke.incidence_rate') - NonLogLinearRiskEffect('risk_factor.high_systolic_blood_pressure', 'cause.intracerebral_hemorrhage.incidence_rate') - NonLogLinearRiskEffect('risk_factor.high_systolic_blood_pressure', 'cause.subarachnoid_hemorrhage.incidence_rate') - # - NonLogLinearRiskEffect('risk_factor.high_systolic_blood_pressure', 'cause.chronic_kidney_disease.incidence_rate') - # - NonLogLinearRiskEffect('risk_factor.diet_high_in_sodium', 'cause.stomach_cancer.incidence_rate') + - NonLogLinearRiskEffect('risk_factor.diet_high_in_sodium', 'cause.stomach_cancer.incidence_rate') vivarium_sodium_reduction.components.interventions: - RelativeShiftIntervention('diet_high_in_sodium.exposure') @@ -68,12 +68,6 @@ configuration: - age_start: 0 - age_end: 125 - risk_factor: - high_systolic_blood_pressure: - - tmred: 120.0 - # diet_high_in_sodium: - # - tmred: 1.0 - stratification: default: - 'age_group'