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IGV.js 2.15.11 hangs at a specific genomic position #1784

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KennethJHan opened this issue Mar 19, 2024 · 1 comment
Open

IGV.js 2.15.11 hangs at a specific genomic position #1784

KennethJHan opened this issue Mar 19, 2024 · 1 comment

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@KennethJHan
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KennethJHan commented Mar 19, 2024

Hi, IGV team.

I found that IGV.js 2.15.11 hangs at a specific genomic position with loading bam file. (I opened "inspect" from google chrome browser and found that the browser kept downloading bam file.)
The genomic position is "chr1:67013162" (GRCh38, WGS sample).
That issue also found in other bam files too. (not this bam file only)
The bam file was made with BWA-mem2 (2.2.1).
I can open the bam file with desktop IGV program and samtools tview in terminal.
That position's read depth was around 30-40x.

This issue was not observed in IGV.js 2.15.0.

Thank you!

@jrobinso
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I haven't been able to reproduce this problem.

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