From b19a7c26c1a2956bb806845aca3a9997d754af14 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Szabolcs=20Horva=CC=81t?= <szhorvat@gmail.com>
Date: Fri, 19 Jan 2024 21:34:48 +0000
Subject: [PATCH] docs: move deprecation badge to top of doc pages

---
 R/centrality.R                    | 8 +++++---
 man/centr_degree_tmax.Rd          | 6 +++---
 man/centralization.degree.tmax.Rd | 3 +--
 man/estimate_betweenness.Rd       | 3 ++-
 man/estimate_closeness.Rd         | 3 ++-
 man/estimate_edge_betweenness.Rd  | 3 ++-
 6 files changed, 15 insertions(+), 11 deletions(-)

diff --git a/R/centrality.R b/R/centrality.R
index 27558542a9..accd2452ac 100644
--- a/R/centrality.R
+++ b/R/centrality.R
@@ -186,8 +186,10 @@ alpha.centrality <- function(graph, nodes = V(graph), alpha = 1, loops = FALSE,
 
 #' Deprecated version of `betweenness()`
 #'
-#' @description Use [`betweenness()`] with the `cutoff` argument instead.
+#' @description
 #' `r lifecycle::badge("deprecated")`
+#'
+#' Use [`betweenness()`] with the `cutoff` argument instead.
 #' @param vids The vertices for which the vertex betweenness estimation will be
 #'   calculated.
 #' @inheritParams betweenness
@@ -342,9 +344,9 @@ edge_betweenness <- function(graph, e = E(graph),
 #' Deprecated version of `edge_betweenness()`
 #'
 #' @description
-#' Use [`edge_betweenness()`] with the `cutoff` argument instead.
 #' `r lifecycle::badge("deprecated")`
 #'
+#' Use [`edge_betweenness()`] with the `cutoff` argument instead.
 #' @inheritParams edge_betweenness
 #' @keywords internal
 #' @export
@@ -458,9 +460,9 @@ closeness <- function(graph, vids = V(graph),
 #' Deprecated version of `closeness()`
 #'
 #' @description
-#' Use [`closeness()`] with the `cutoff` argument instead.
 #' `r lifecycle::badge("deprecated")`
 #'
+#' Use [`closeness()`] with the `cutoff` argument instead.
 #' @inheritParams closeness
 #' @keywords internal
 #' @export
diff --git a/man/centr_degree_tmax.Rd b/man/centr_degree_tmax.Rd
index b617f8a880..62939fd6c1 100644
--- a/man/centr_degree_tmax.Rd
+++ b/man/centr_degree_tmax.Rd
@@ -39,13 +39,13 @@ centr_degree(g, normalized = TRUE)$centralization
 }
 \seealso{
 Other centralization related: 
-\code{\link{centr_betw_tmax}()},
 \code{\link{centr_betw}()},
-\code{\link{centr_clo_tmax}()},
+\code{\link{centr_betw_tmax}()},
 \code{\link{centr_clo}()},
+\code{\link{centr_clo_tmax}()},
 \code{\link{centr_degree}()},
-\code{\link{centr_eigen_tmax}()},
 \code{\link{centr_eigen}()},
+\code{\link{centr_eigen_tmax}()},
 \code{\link{centralize}()}
 }
 \concept{centralization related}
diff --git a/man/centralization.degree.tmax.Rd b/man/centralization.degree.tmax.Rd
index b71ddbe3df..d723938f0a 100644
--- a/man/centralization.degree.tmax.Rd
+++ b/man/centralization.degree.tmax.Rd
@@ -21,8 +21,7 @@ centralization.degree.tmax(
 \code{degree()}.}
 
 \item{loops}{Logical scalar, whether to consider loops edges when
-calculating the degree. Currently the default value is \code{FALSE},
-but this argument will be required from igraph 1.4.0.}
+calculating the degree.}
 }
 \description{
 \ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}}
diff --git a/man/estimate_betweenness.Rd b/man/estimate_betweenness.Rd
index ecd74a7b63..3a95e8f9ef 100644
--- a/man/estimate_betweenness.Rd
+++ b/man/estimate_betweenness.Rd
@@ -30,7 +30,8 @@ used by default. Weights are used to calculate weighted shortest paths,
 so they are interpreted as distances.}
 }
 \description{
-Use \code{\link[=betweenness]{betweenness()}} with the \code{cutoff} argument instead.
 \ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}}
+
+Use \code{\link[=betweenness]{betweenness()}} with the \code{cutoff} argument instead.
 }
 \keyword{internal}
diff --git a/man/estimate_closeness.Rd b/man/estimate_closeness.Rd
index 5670061032..0441327d3b 100644
--- a/man/estimate_closeness.Rd
+++ b/man/estimate_closeness.Rd
@@ -38,7 +38,8 @@ The non-normalized closeness is the inverse of the sum of distances to
 all reachable vertices.}
 }
 \description{
-Use \code{\link[=closeness]{closeness()}} with the \code{cutoff} argument instead.
 \ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}}
+
+Use \code{\link[=closeness]{closeness()}} with the \code{cutoff} argument instead.
 }
 \keyword{internal}
diff --git a/man/estimate_edge_betweenness.Rd b/man/estimate_edge_betweenness.Rd
index 22b8f85b8e..e83aa9a6d8 100644
--- a/man/estimate_edge_betweenness.Rd
+++ b/man/estimate_edge_betweenness.Rd
@@ -29,7 +29,8 @@ used by default. Weights are used to calculate weighted shortest paths,
 so they are interpreted as distances.}
 }
 \description{
-Use \code{\link[=edge_betweenness]{edge_betweenness()}} with the \code{cutoff} argument instead.
 \ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}}
+
+Use \code{\link[=edge_betweenness]{edge_betweenness()}} with the \code{cutoff} argument instead.
 }
 \keyword{internal}