wbc_rcp

#create white blood cell fastenloc rcp file in R:
#left this file gzipped for no particular reason
/home/isabelle/summary_stats/phenomexcan_files/fastenloc-torus-rcp.tsv.gz

rcp<-read.table("fastenloc-torus-rcp.tsv.gz",header=TRUE,sep="\t")
wbccolumns<-grep("White_blood_cell",names(rcp),value=TRUE)
rcpwbc<-rcp%>%select(gene_name,wbccolumns)%>%arrange(X30000_raw.White_blood_cell_leukocyte_count)%>%write.table(file="WBC_rcp.csv",row.names=FALSE,quote=FALSE,sep=",")

#creates table of two white blood cell counts available in PhenomeXcan and the rcp values for all genes