check-full.yaml

# Hybrid of r-lib/actions "check-standard" and "check-full"
#
# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
  push:
    branches: [master,staging]
  pull_request:
    branches: [master,staging]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest, r: 'release'}
#          - {os: maxOS-latest, r: 'devel'}
          - {os: windows-latest, r: 'release'}
#          - {os: windows-latest, r: 'devel'}
          - {os: ubuntu-latest, r: 'release'}
          - {os: ubuntu-latest, r: 'devel'}
          - {os: ubuntu-latest, r: 'oldrel'}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes
      
    steps:
      - uses: actions/checkout@v3

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}

      - uses: r-lib/actions/setup-pandoc@v2

      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Cache R packages
        uses: actions/cache@v2
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "22.04"))')
          
      - name: "[Custom block] [Linux] Install spatial libraries"
        if: runner.os == 'Linux'
        run: |
          sudo apt-get update -y
          sudo apt-get install -y libgdal-dev libproj-dev libgeos-dev libudunits2-dev libmkl-rt libglpk-dev libxml2 libgmp-dev
      
      - name: "[Custom block] [macOS] Install spatial libraries"
        if: runner.os == 'macOS'
        run: |
          # conflicts with gfortran from r-lib/actions when linking gcc
          # rm '/usr/local/bin/gfortran'
          brew install pkg-config gdal proj geos
      
      - name: Install system dependencies (Windows)
        if: runner.os == 'Windows'
        run: |
          pacman -Sy --noconfirm mingw-w64-i686-glpk mingw-w64-i686-libxml2 mingw-w64-i686-gmp mingw-w64-x86_64-glpk mingw-w64-x86_64-libxml2 mingw-w64-x86_64-gmp
      
      - name: Install dependencies
        run: |
          install.packages("remotes")
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("rcmdcheck")
        shell: Rscript {0}

      - name: Session info
        run: |
          options(width = 100)
          pkgs <- installed.packages()[, "Package"]
          sessioninfo::session_info(pkgs, include_base = TRUE)
        shell: Rscript {0}

      - name: Check
        env:
          _R_CHECK_CRAN_INCOMING_: false
        run: |
          options(crayon.enabled = TRUE)
          rcmdcheck::rcmdcheck(args = c("--no-manual"), error_on = "error", check_dir = "check")
        shell: Rscript {0}

      - name: Show testthat output
        if: always()
        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@main
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check