Diabetes Prediction.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import numpy as np\n",
    "import pandas as pd\n",
    "from sklearn.preprocessing import StandardScaler\n",
    "from sklearn.model_selection import train_test_split\n",
    "from sklearn import svm\n",
    "from sklearn.metrics import accuracy_score"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "diabetes = pd.read_csv('diabetes dataset.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Pregnancies</th>\n",
       "      <th>Glucose</th>\n",
       "      <th>BloodPressure</th>\n",
       "      <th>SkinThickness</th>\n",
       "      <th>Insulin</th>\n",
       "      <th>BMI</th>\n",
       "      <th>DiabetesPedigreeFunction</th>\n",
       "      <th>Age</th>\n",
       "      <th>Outcome</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>6</td>\n",
       "      <td>148</td>\n",
       "      <td>72</td>\n",
       "      <td>35</td>\n",
       "      <td>0</td>\n",
       "      <td>33.6</td>\n",
       "      <td>0.627</td>\n",
       "      <td>50</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>1</td>\n",
       "      <td>85</td>\n",
       "      <td>66</td>\n",
       "      <td>29</td>\n",
       "      <td>0</td>\n",
       "      <td>26.6</td>\n",
       "      <td>0.351</td>\n",
       "      <td>31</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>8</td>\n",
       "      <td>183</td>\n",
       "      <td>64</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>23.3</td>\n",
       "      <td>0.672</td>\n",
       "      <td>32</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>1</td>\n",
       "      <td>89</td>\n",
       "      <td>66</td>\n",
       "      <td>23</td>\n",
       "      <td>94</td>\n",
       "      <td>28.1</td>\n",
       "      <td>0.167</td>\n",
       "      <td>21</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0</td>\n",
       "      <td>137</td>\n",
       "      <td>40</td>\n",
       "      <td>35</td>\n",
       "      <td>168</td>\n",
       "      <td>43.1</td>\n",
       "      <td>2.288</td>\n",
       "      <td>33</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "   Pregnancies  Glucose  BloodPressure  SkinThickness  Insulin   BMI  \\\n",
       "0            6      148             72             35        0  33.6   \n",
       "1            1       85             66             29        0  26.6   \n",
       "2            8      183             64              0        0  23.3   \n",
       "3            1       89             66             23       94  28.1   \n",
       "4            0      137             40             35      168  43.1   \n",
       "\n",
       "   DiabetesPedigreeFunction  Age  Outcome  \n",
       "0                     0.627   50        1  \n",
       "1                     0.351   31        0  \n",
       "2                     0.672   32        1  \n",
       "3                     0.167   21        0  \n",
       "4                     2.288   33        1  "
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "diabetes.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(768, 9)"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "diabetes.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Pregnancies</th>\n",
       "      <th>Glucose</th>\n",
       "      <th>BloodPressure</th>\n",
       "      <th>SkinThickness</th>\n",
       "      <th>Insulin</th>\n",
       "      <th>BMI</th>\n",
       "      <th>DiabetesPedigreeFunction</th>\n",
       "      <th>Age</th>\n",
       "      <th>Outcome</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>count</th>\n",
       "      <td>768.000000</td>\n",
       "      <td>768.000000</td>\n",
       "      <td>768.000000</td>\n",
       "      <td>768.000000</td>\n",
       "      <td>768.000000</td>\n",
       "      <td>768.000000</td>\n",
       "      <td>768.000000</td>\n",
       "      <td>768.000000</td>\n",
       "      <td>768.000000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>mean</th>\n",
       "      <td>3.845052</td>\n",
       "      <td>120.894531</td>\n",
       "      <td>69.105469</td>\n",
       "      <td>20.536458</td>\n",
       "      <td>79.799479</td>\n",
       "      <td>31.992578</td>\n",
       "      <td>0.471876</td>\n",
       "      <td>33.240885</td>\n",
       "      <td>0.348958</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>std</th>\n",
       "      <td>3.369578</td>\n",
       "      <td>31.972618</td>\n",
       "      <td>19.355807</td>\n",
       "      <td>15.952218</td>\n",
       "      <td>115.244002</td>\n",
       "      <td>7.884160</td>\n",
       "      <td>0.331329</td>\n",
       "      <td>11.760232</td>\n",
       "      <td>0.476951</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>min</th>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.078000</td>\n",
       "      <td>21.000000</td>\n",
       "      <td>0.000000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25%</th>\n",
       "      <td>1.000000</td>\n",
       "      <td>99.000000</td>\n",
       "      <td>62.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>27.300000</td>\n",
       "      <td>0.243750</td>\n",
       "      <td>24.000000</td>\n",
       "      <td>0.000000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50%</th>\n",
       "      <td>3.000000</td>\n",
       "      <td>117.000000</td>\n",
       "      <td>72.000000</td>\n",
       "      <td>23.000000</td>\n",
       "      <td>30.500000</td>\n",
       "      <td>32.000000</td>\n",
       "      <td>0.372500</td>\n",
       "      <td>29.000000</td>\n",
       "      <td>0.000000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>75%</th>\n",
       "      <td>6.000000</td>\n",
       "      <td>140.250000</td>\n",
       "      <td>80.000000</td>\n",
       "      <td>32.000000</td>\n",
       "      <td>127.250000</td>\n",
       "      <td>36.600000</td>\n",
       "      <td>0.626250</td>\n",
       "      <td>41.000000</td>\n",
       "      <td>1.000000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>max</th>\n",
       "      <td>17.000000</td>\n",
       "      <td>199.000000</td>\n",
       "      <td>122.000000</td>\n",
       "      <td>99.000000</td>\n",
       "      <td>846.000000</td>\n",
       "      <td>67.100000</td>\n",
       "      <td>2.420000</td>\n",
       "      <td>81.000000</td>\n",
       "      <td>1.000000</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "       Pregnancies     Glucose  BloodPressure  SkinThickness     Insulin  \\\n",
       "count   768.000000  768.000000     768.000000     768.000000  768.000000   \n",
       "mean      3.845052  120.894531      69.105469      20.536458   79.799479   \n",
       "std       3.369578   31.972618      19.355807      15.952218  115.244002   \n",
       "min       0.000000    0.000000       0.000000       0.000000    0.000000   \n",
       "25%       1.000000   99.000000      62.000000       0.000000    0.000000   \n",
       "50%       3.000000  117.000000      72.000000      23.000000   30.500000   \n",
       "75%       6.000000  140.250000      80.000000      32.000000  127.250000   \n",
       "max      17.000000  199.000000     122.000000      99.000000  846.000000   \n",
       "\n",
       "              BMI  DiabetesPedigreeFunction         Age     Outcome  \n",
       "count  768.000000                768.000000  768.000000  768.000000  \n",
       "mean    31.992578                  0.471876   33.240885    0.348958  \n",
       "std      7.884160                  0.331329   11.760232    0.476951  \n",
       "min      0.000000                  0.078000   21.000000    0.000000  \n",
       "25%     27.300000                  0.243750   24.000000    0.000000  \n",
       "50%     32.000000                  0.372500   29.000000    0.000000  \n",
       "75%     36.600000                  0.626250   41.000000    1.000000  \n",
       "max     67.100000                  2.420000   81.000000    1.000000  "
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "diabetes.describe()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "0    500\n",
       "1    268\n",
       "Name: Outcome, dtype: int64"
      ]
     },
     "execution_count": 6,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "diabetes['Outcome'].value_counts()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Pregnancies</th>\n",
       "      <th>Glucose</th>\n",
       "      <th>BloodPressure</th>\n",
       "      <th>SkinThickness</th>\n",
       "      <th>Insulin</th>\n",
       "      <th>BMI</th>\n",
       "      <th>DiabetesPedigreeFunction</th>\n",
       "      <th>Age</th>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>Outcome</th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>3.298000</td>\n",
       "      <td>109.980000</td>\n",
       "      <td>68.184000</td>\n",
       "      <td>19.664000</td>\n",
       "      <td>68.792000</td>\n",
       "      <td>30.304200</td>\n",
       "      <td>0.429734</td>\n",
       "      <td>31.190000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>4.865672</td>\n",
       "      <td>141.257463</td>\n",
       "      <td>70.824627</td>\n",
       "      <td>22.164179</td>\n",
       "      <td>100.335821</td>\n",
       "      <td>35.142537</td>\n",
       "      <td>0.550500</td>\n",
       "      <td>37.067164</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "         Pregnancies     Glucose  BloodPressure  SkinThickness     Insulin  \\\n",
       "Outcome                                                                      \n",
       "0           3.298000  109.980000      68.184000      19.664000   68.792000   \n",
       "1           4.865672  141.257463      70.824627      22.164179  100.335821   \n",
       "\n",
       "               BMI  DiabetesPedigreeFunction        Age  \n",
       "Outcome                                                  \n",
       "0        30.304200                  0.429734  31.190000  \n",
       "1        35.142537                  0.550500  37.067164  "
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#0 means non-diabetic and 1 means diabetic patients\n",
    "diabetes.groupby('Outcome').mean()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [],
   "source": [
    "X = diabetes.drop(columns = 'Outcome', axis=1)\n",
    "Y = diabetes['Outcome']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "     Pregnancies  Glucose  BloodPressure  SkinThickness  Insulin   BMI  \\\n",
      "0              6      148             72             35        0  33.6   \n",
      "1              1       85             66             29        0  26.6   \n",
      "2              8      183             64              0        0  23.3   \n",
      "3              1       89             66             23       94  28.1   \n",
      "4              0      137             40             35      168  43.1   \n",
      "..           ...      ...            ...            ...      ...   ...   \n",
      "763           10      101             76             48      180  32.9   \n",
      "764            2      122             70             27        0  36.8   \n",
      "765            5      121             72             23      112  26.2   \n",
      "766            1      126             60              0        0  30.1   \n",
      "767            1       93             70             31        0  30.4   \n",
      "\n",
      "     DiabetesPedigreeFunction  Age  \n",
      "0                       0.627   50  \n",
      "1                       0.351   31  \n",
      "2                       0.672   32  \n",
      "3                       0.167   21  \n",
      "4                       2.288   33  \n",
      "..                        ...  ...  \n",
      "763                     0.171   63  \n",
      "764                     0.340   27  \n",
      "765                     0.245   30  \n",
      "766                     0.349   47  \n",
      "767                     0.315   23  \n",
      "\n",
      "[768 rows x 8 columns]\n"
     ]
    }
   ],
   "source": [
    "print(X)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0      1\n",
      "1      0\n",
      "2      1\n",
      "3      0\n",
      "4      1\n",
      "      ..\n",
      "763    0\n",
      "764    0\n",
      "765    0\n",
      "766    1\n",
      "767    0\n",
      "Name: Outcome, Length: 768, dtype: int64\n"
     ]
    }
   ],
   "source": [
    "print(Y)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [],
   "source": [
    "scaler = StandardScaler()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "StandardScaler()"
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "scaler.fit(X)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [],
   "source": [
    "standardized_data = scaler.transform(X)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[[ 0.63994726  0.84832379  0.14964075 ...  0.20401277  0.46849198\n",
      "   1.4259954 ]\n",
      " [-0.84488505 -1.12339636 -0.16054575 ... -0.68442195 -0.36506078\n",
      "  -0.19067191]\n",
      " [ 1.23388019  1.94372388 -0.26394125 ... -1.10325546  0.60439732\n",
      "  -0.10558415]\n",
      " ...\n",
      " [ 0.3429808   0.00330087  0.14964075 ... -0.73518964 -0.68519336\n",
      "  -0.27575966]\n",
      " [-0.84488505  0.1597866  -0.47073225 ... -0.24020459 -0.37110101\n",
      "   1.17073215]\n",
      " [-0.84488505 -0.8730192   0.04624525 ... -0.20212881 -0.47378505\n",
      "  -0.87137393]]\n"
     ]
    }
   ],
   "source": [
    "print(standardized_data)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {},
   "outputs": [],
   "source": [
    "X = standardized_data\n",
    "Y = diabetes['Outcome']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[[ 0.63994726  0.84832379  0.14964075 ...  0.20401277  0.46849198\n",
      "   1.4259954 ]\n",
      " [-0.84488505 -1.12339636 -0.16054575 ... -0.68442195 -0.36506078\n",
      "  -0.19067191]\n",
      " [ 1.23388019  1.94372388 -0.26394125 ... -1.10325546  0.60439732\n",
      "  -0.10558415]\n",
      " ...\n",
      " [ 0.3429808   0.00330087  0.14964075 ... -0.73518964 -0.68519336\n",
      "  -0.27575966]\n",
      " [-0.84488505  0.1597866  -0.47073225 ... -0.24020459 -0.37110101\n",
      "   1.17073215]\n",
      " [-0.84488505 -0.8730192   0.04624525 ... -0.20212881 -0.47378505\n",
      "  -0.87137393]]\n",
      "0      1\n",
      "1      0\n",
      "2      1\n",
      "3      0\n",
      "4      1\n",
      "      ..\n",
      "763    0\n",
      "764    0\n",
      "765    0\n",
      "766    1\n",
      "767    0\n",
      "Name: Outcome, Length: 768, dtype: int64\n"
     ]
    }
   ],
   "source": [
    "print(X)\n",
    "print(Y)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {},
   "outputs": [],
   "source": [
    "X_train, X_test, Y_train, Y_test = train_test_split(X,Y, test_size = 0.2, stratify=Y, random_state=2)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "(768, 8) (614, 8) (154, 8)\n"
     ]
    }
   ],
   "source": [
    "print(X.shape, X_train.shape, X_test.shape)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {},
   "outputs": [],
   "source": [
    "classifier = svm.SVC(kernel='linear')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "SVC(kernel='linear')"
      ]
     },
     "execution_count": 20,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "classifier.fit(X_train,Y_train)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [],
   "source": [
    "X_train_prediction = classifier.predict(X_train)\n",
    "training_data_accuracy = accuracy_score(X_train_prediction, Y_train)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Accuracy score of the training data is:  0.7866449511400652\n"
     ]
    }
   ],
   "source": [
    "print(\"Accuracy score of the training data is: \", training_data_accuracy)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [],
   "source": [
    "X_test_prediction = classifier.predict(X_test)\n",
    "test_data_accuracy = accuracy_score(X_test_prediction, Y_test)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Accuracy score of the test data is:  0.7727272727272727\n"
     ]
    }
   ],
   "source": [
    "print(\"Accuracy score of the test data is: \", test_data_accuracy)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[[-0.84488505 -0.56004775 -2.02166474  1.09545411  0.02778979  1.43512945\n",
      "  -0.87244072 -0.0204964 ]]\n",
      "[0]\n",
      "The Person is non-diabetic\n"
     ]
    }
   ],
   "source": [
    "input_data = (1,103,30,38,83,43.3,0.183,33)\n",
    "input_data_as_numpy_array = np.asarray(input_data)\n",
    "input_data_reshaped = input_data_as_numpy_array.reshape(1,-1)\n",
    "std_data = scaler.transform(input_data_reshaped)\n",
    "print(std_data)\n",
    "prediction = classifier.predict(std_data)\n",
    "print(prediction)\n",
    "if (prediction[0] == 0):\n",
    "    print(\"The Person is non-diabetic\")\n",
    "else:\n",
    "    print(\"The person is diabetic\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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