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<!DOCTYPE html>
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<li class="toctree-l1 has-children"><a class="reference internal" href="engine.html"><code class="docutils literal notranslate"><span class="pre">engine</span></code>: Differentiable engine</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul class="simple">
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<li class="toctree-l1 has-children"><a class="reference internal" href="functional.html"><code class="docutils literal notranslate"><span class="pre">functional</span></code>: Functions and functionals</a><input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-2"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.activation.html"><code class="docutils literal notranslate"><span class="pre">activation</span></code>: Activation functions</a><input class="toctree-checkbox" id="toctree-checkbox-3" name="toctree-checkbox-3" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-3"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.activation.amplitude_tanh.html"><code class="docutils literal notranslate"><span class="pre">amplitude_tanh</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.activation.amplitude_atanh.html"><code class="docutils literal notranslate"><span class="pre">amplitude_atanh</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.activation.corrnorm.html"><code class="docutils literal notranslate"><span class="pre">corrnorm</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.activation.isochor.html"><code class="docutils literal notranslate"><span class="pre">isochor</span></code>: PSD normalisation</a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.cmass.html"><code class="docutils literal notranslate"><span class="pre">cmass</span></code>: Centre of mass</a><input class="toctree-checkbox" id="toctree-checkbox-4" name="toctree-checkbox-4" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-4"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cmass.cmass_coor.html"><code class="docutils literal notranslate"><span class="pre">cmass_coor</span></code>: Centre of mass, any coordinates</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cmass.cmass.html"><code class="docutils literal notranslate"><span class="pre">cmass</span></code>: Centre of mass, array coordinates</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cmass.diffuse.html"><code class="docutils literal notranslate"><span class="pre">diffuse</span></code>: Diffuseness around centre of mass</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cmass.cmass_reference.html">Displacement from a reference centre of mass</a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.connectopy.html"><code class="docutils literal notranslate"><span class="pre">connectopy</span></code>: Connectopic manifolds</a><input class="toctree-checkbox" id="toctree-checkbox-5" name="toctree-checkbox-5" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-5"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.connectopy.laplacian_eigenmaps.html"><code class="docutils literal notranslate"><span class="pre">laplacian_eigenmaps</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.connectopy.diffusion_mapping.html"><code class="docutils literal notranslate"><span class="pre">diffusion_mapping</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.cov.html"><code class="docutils literal notranslate"><span class="pre">cov</span></code>: Covariances and correlations</a><input class="toctree-checkbox" id="toctree-checkbox-6" name="toctree-checkbox-6" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-6"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.cov.html"><code class="docutils literal notranslate"><span class="pre">cov</span></code>: Covariance</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.corr.html"><code class="docutils literal notranslate"><span class="pre">corr</span></code>: Pearson correlation</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.partialcov.html"><code class="docutils literal notranslate"><span class="pre">partialcov</span></code>: Partial covariance</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.partialcorr.html"><code class="docutils literal notranslate"><span class="pre">partialcorr</span></code>: Partial correlation</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.pairedcov.html"><code class="docutils literal notranslate"><span class="pre">pairedcov</span></code>: Paired covariance</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.pairedcorr.html"><code class="docutils literal notranslate"><span class="pre">pairedcorr</span></code>: Paired correlation</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.conditionalcov.html"><code class="docutils literal notranslate"><span class="pre">conditionalcov</span></code>: Conditional covariance</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.conditionalcorr.html"><code class="docutils literal notranslate"><span class="pre">conditionalcorr</span></code>: Conditional correlation</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.cov.precision.html"><code class="docutils literal notranslate"><span class="pre">precision</span></code>: Inverse covariance (precision)</a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.fourier.html"><code class="docutils literal notranslate"><span class="pre">fourier</span></code>: Frequency-domain filter</a><input class="toctree-checkbox" id="toctree-checkbox-7" name="toctree-checkbox-7" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-7"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.product_filter.html"><code class="docutils literal notranslate"><span class="pre">product_filter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.product_filtfilt.html"><code class="docutils literal notranslate"><span class="pre">product_filtfilt</span></code>: Zero-phase filter</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.unwrap.html"><code class="docutils literal notranslate"><span class="pre">unwrap</span></code>: Unwrap phase</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.analytic_signal.html"><code class="docutils literal notranslate"><span class="pre">analytic_signal</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.hilbert_transform.html"><code class="docutils literal notranslate"><span class="pre">hilbert_transform</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.envelope.html"><code class="docutils literal notranslate"><span class="pre">envelope</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.instantaneous_phase.html"><code class="docutils literal notranslate"><span class="pre">instantaneous_phase</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.instantaneous_frequency.html"><code class="docutils literal notranslate"><span class="pre">instantaneous_frequency</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.fourier.env_inst.html"><code class="docutils literal notranslate"><span class="pre">env_inst</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.graph.html"><code class="docutils literal notranslate"><span class="pre">graph</span></code>: Graphs and networks</a><input class="toctree-checkbox" id="toctree-checkbox-8" name="toctree-checkbox-8" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-8"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.graph.girvan_newman_null.html"><code class="docutils literal notranslate"><span class="pre">girvan_newman_null</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.graph.modularity_matrix.html"><code class="docutils literal notranslate"><span class="pre">modularity_matrix</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.graph.coaffiliation.html"><code class="docutils literal notranslate"><span class="pre">coaffiliation</span></code>: Community coaffiliation</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.graph.relaxed_modularity.html"><code class="docutils literal notranslate"><span class="pre">relaxed_modularity</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.graph.graph_laplacian.html"><code class="docutils literal notranslate"><span class="pre">graph_laplacian</span></code>: Graph Laplacian</a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.interpolate.html"><code class="docutils literal notranslate"><span class="pre">interpolate</span></code>: Interpolation and imputation</a><input class="toctree-checkbox" id="toctree-checkbox-9" name="toctree-checkbox-9" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-9"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.interpolate.hybrid_interpolate.html"><code class="docutils literal notranslate"><span class="pre">hybrid_interpolate</span></code>: Linear + spectral interpolation</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.interpolate.linear_interpolate.html"><code class="docutils literal notranslate"><span class="pre">linear_interpolate</span></code>: Linear interpolation</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.interpolate.weighted_interpolate.html"><code class="docutils literal notranslate"><span class="pre">weighted_interpolate</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.interpolate.spectral_interpolate.html"><code class="docutils literal notranslate"><span class="pre">spectral_interpolate</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.kernel.html"><code class="docutils literal notranslate"><span class="pre">kernel</span></code>: Parameterised kernels</a><input class="toctree-checkbox" id="toctree-checkbox-10" name="toctree-checkbox-10" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-10"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.linear_kernel.html"><code class="docutils literal notranslate"><span class="pre">linear_kernel</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.param_norm.html"><code class="docutils literal notranslate"><span class="pre">param_norm</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.linear_distance.html"><code class="docutils literal notranslate"><span class="pre">linear_distance</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.polynomial_kernel.html"><code class="docutils literal notranslate"><span class="pre">polynomial_kernel</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.sigmoid_kernel.html"><code class="docutils literal notranslate"><span class="pre">sigmoid_kernel</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.gaussian_kernel.html"><code class="docutils literal notranslate"><span class="pre">gaussian_kernel</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.rbf_kernel.html"><code class="docutils literal notranslate"><span class="pre">rbf_kernel</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.cosine_kernel.html"><code class="docutils literal notranslate"><span class="pre">cosine_kernel</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.cov_kernel.html"><code class="docutils literal notranslate"><span class="pre">cov_kernel</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.kernel.corr_kernel.html"><code class="docutils literal notranslate"><span class="pre">corr_kernel</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.matrix.html"><code class="docutils literal notranslate"><span class="pre">matrix</span></code>: Matrix operations</a><input class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.cholesky_invert.html"><code class="docutils literal notranslate"><span class="pre">cholesky_invert</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.symmetric.html"><code class="docutils literal notranslate"><span class="pre">symmetric</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.spd.html"><code class="docutils literal notranslate"><span class="pre">spd</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.expand_outer.html"><code class="docutils literal notranslate"><span class="pre">expand_outer</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.recondition_eigenspaces.html"><code class="docutils literal notranslate"><span class="pre">recondition_eigenspaces</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.delete_diagonal.html"><code class="docutils literal notranslate"><span class="pre">delete_diagonal</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.diag_embed.html"><code class="docutils literal notranslate"><span class="pre">diag_embed</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.fill_diagonal.html"><code class="docutils literal notranslate"><span class="pre">fill_diagonal</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.toeplitz_2d.html"><code class="docutils literal notranslate"><span class="pre">toeplitz_2d</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.toeplitz.html"><code class="docutils literal notranslate"><span class="pre">toeplitz</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.sym2vec.html"><code class="docutils literal notranslate"><span class="pre">sym2vec</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.vec2sym.html"><code class="docutils literal notranslate"><span class="pre">vec2sym</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.matrix.squareform.html"><code class="docutils literal notranslate"><span class="pre">squareform</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.resid.residualise.html"><code class="docutils literal notranslate"><span class="pre">residualise</span></code></a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.semidefinite.html"><code class="docutils literal notranslate"><span class="pre">semidefinite</span></code>: Positive semidefinite cone</a><input class="toctree-checkbox" id="toctree-checkbox-12" name="toctree-checkbox-12" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-12"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.semidefinite.tangent_project_spd.html"><code class="docutils literal notranslate"><span class="pre">tangent_project_spd</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.semidefinite.cone_project_spd.html"><code class="docutils literal notranslate"><span class="pre">cone_project_spd</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.semidefinite.mean_euc_spd.html"><code class="docutils literal notranslate"><span class="pre">mean_euc_spd</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.semidefinite.mean_harm_spd.html"><code class="docutils literal notranslate"><span class="pre">mean_harm_spd</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.semidefinite.mean_logeuc_spd.html"><code class="docutils literal notranslate"><span class="pre">mean_logeuc_spd</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.semidefinite.mean_geom_spd.html"><code class="docutils literal notranslate"><span class="pre">mean_geom_spd</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.sparse.html"><code class="docutils literal notranslate"><span class="pre">sparse</span></code>: Sparse matrix operations</a><input class="toctree-checkbox" id="toctree-checkbox-13" name="toctree-checkbox-13" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-13"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.random_sparse.html"><code class="docutils literal notranslate"><span class="pre">random_sparse</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.spdiagmm.html"><code class="docutils literal notranslate"><span class="pre">spdiagmm</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.dspdmm.html"><code class="docutils literal notranslate"><span class="pre">dspdmm</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.spspmm_full.html"><code class="docutils literal notranslate"><span class="pre">spspmm_full</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.topk.html"><code class="docutils literal notranslate"><span class="pre">topk</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.as_topk.html"><code class="docutils literal notranslate"><span class="pre">as_topk</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.full_as_topk.html"><code class="docutils literal notranslate"><span class="pre">full_as_topk</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.sparse_astype.html"><code class="docutils literal notranslate"><span class="pre">sparse_astype</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.trace_spspmm.html"><code class="docutils literal notranslate"><span class="pre">trace_spspmm</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.spspmm.html"><code class="docutils literal notranslate"><span class="pre">spspmm</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.spsp_pairdiff.html"><code class="docutils literal notranslate"><span class="pre">spsp_pairdiff</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.select_indices.html"><code class="docutils literal notranslate"><span class="pre">select_indices</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.topkx.html"><code class="docutils literal notranslate"><span class="pre">topkx</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.sp_block_serialise.html"><code class="docutils literal notranslate"><span class="pre">sp_block_serialise</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.splr_hadamard.html"><code class="docutils literal notranslate"><span class="pre">splr_hadamard</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.spsp_innerpaired.html"><code class="docutils literal notranslate"><span class="pre">spsp_innerpaired</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.topk_to_bcoo.html"><code class="docutils literal notranslate"><span class="pre">topk_to_bcoo</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.topk_diagzero.html"><code class="docutils literal notranslate"><span class="pre">topk_diagzero</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.topk_diagreplace.html"><code class="docutils literal notranslate"><span class="pre">topk_diagreplace</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sparse.block_serialise.html"><code class="docutils literal notranslate"><span class="pre">block_serialise</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.sphere.html"><code class="docutils literal notranslate"><span class="pre">sphere</span></code>: Spherical coordinates</a><input class="toctree-checkbox" id="toctree-checkbox-14" name="toctree-checkbox-14" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-14"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sphere.spherical_geodesic.html"><code class="docutils literal notranslate"><span class="pre">spherical_geodesic</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sphere.sphere_to_normals.html"><code class="docutils literal notranslate"><span class="pre">sphere_to_normals</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sphere.sphere_to_latlong.html"><code class="docutils literal notranslate"><span class="pre">sphere_to_latlong</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sphere.spatial_conv.html"><code class="docutils literal notranslate"><span class="pre">spatial_conv</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sphere.spherical_conv.html"><code class="docutils literal notranslate"><span class="pre">spherical_conv</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.sphere.euclidean_conv.html"><code class="docutils literal notranslate"><span class="pre">euclidean_conv</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.sylo.html"><code class="docutils literal notranslate"><span class="pre">sylo</span></code>: Sylo function</a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.symmap.html"><code class="docutils literal notranslate"><span class="pre">symmap</span></code>: Symmetric matrix maps</a><input class="toctree-checkbox" id="toctree-checkbox-15" name="toctree-checkbox-15" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-15"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.symmap.symmap.html"><code class="docutils literal notranslate"><span class="pre">symmap</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.symmap.symexp.html"><code class="docutils literal notranslate"><span class="pre">symexp</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.symmap.symlog.html"><code class="docutils literal notranslate"><span class="pre">symlog</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.symmap.symsqrt.html"><code class="docutils literal notranslate"><span class="pre">symsqrt</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.tsconv.html"><code class="docutils literal notranslate"><span class="pre">tsconv</span></code>: Time series convolution</a><input class="toctree-checkbox" id="toctree-checkbox-16" name="toctree-checkbox-16" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-16"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.tsconv.conv.html"><code class="docutils literal notranslate"><span class="pre">conv</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.tsconv.tsconv2d.html"><code class="docutils literal notranslate"><span class="pre">tsconv2d</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.tsconv.basischan.html"><code class="docutils literal notranslate"><span class="pre">basischan</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.tsconv.basisconv2d.html"><code class="docutils literal notranslate"><span class="pre">basisconv2d</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.tsconv.polychan.html"><code class="docutils literal notranslate"><span class="pre">polychan</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.tsconv.polyconv2d.html"><code class="docutils literal notranslate"><span class="pre">polyconv2d</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.utils.html"><code class="docutils literal notranslate"><span class="pre">utils</span></code>: Miscellaneous</a><input class="toctree-checkbox" id="toctree-checkbox-17" name="toctree-checkbox-17" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-17"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.utils.conform_mask.html"><code class="docutils literal notranslate"><span class="pre">conform_mask</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.utils.apply_mask.html"><code class="docutils literal notranslate"><span class="pre">apply_mask</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.utils.mask_tensor.html"><code class="docutils literal notranslate"><span class="pre">mask_tensor</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.utils.complex_decompose.html"><code class="docutils literal notranslate"><span class="pre">complex_decompose</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.utils.complex_recompose.html"><code class="docutils literal notranslate"><span class="pre">complex_recompose</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.utils.amplitude_apply.html"><code class="docutils literal notranslate"><span class="pre">amplitude_apply</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.functional.window.html"><code class="docutils literal notranslate"><span class="pre">window</span></code>: Random windowing</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-18"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.window.sample_windows.html"><code class="docutils literal notranslate"><span class="pre">sample_windows</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.window.sample_nonoverlapping_windows_existing_ax.html"><code class="docutils literal notranslate"><span class="pre">sample_nonoverlapping_windows_existing_ax</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.window.sample_nonoverlapping_windows_new_ax.html"><code class="docutils literal notranslate"><span class="pre">sample_nonoverlapping_windows_new_ax</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.window.sample_overlapping_windows_new_ax.html"><code class="docutils literal notranslate"><span class="pre">sample_overlapping_windows_new_ax</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.functional.window.sample_overlapping_windows_existing_ax.html"><code class="docutils literal notranslate"><span class="pre">sample_overlapping_windows_existing_ax</span></code></a></li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l1 has-children"><a class="reference internal" href="init.html"><code class="docutils literal notranslate"><span class="pre">init</span></code>: Initialisation schemes</a><input class="toctree-checkbox" id="toctree-checkbox-19" name="toctree-checkbox-19" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-19"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.init.atlas.html"><code class="docutils literal notranslate"><span class="pre">atlas</span></code>: Atlas initialisation</a><input class="toctree-checkbox" id="toctree-checkbox-20" name="toctree-checkbox-20" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-20"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.BaseAtlas.html"><code class="docutils literal notranslate"><span class="pre">BaseAtlas</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.DirichletInitBaseAtlas.html"><code class="docutils literal notranslate"><span class="pre">DirichletInitBaseAtlas</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.DiscreteVolumetricAtlas.html"><code class="docutils literal notranslate"><span class="pre">DiscreteVolumetricAtlas</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.MultiVolumetricAtlas.html"><code class="docutils literal notranslate"><span class="pre">MultiVolumetricAtlas</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.MultifileVolumetricAtlas.html"><code class="docutils literal notranslate"><span class="pre">MultifileVolumetricAtlas</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.CortexSubcortexCIfTIAtlas.html"><code class="docutils literal notranslate"><span class="pre">CortexSubcortexCIfTIAtlas</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.DirichletInitVolumetricAtlas.html"><code class="docutils literal notranslate"><span class="pre">DirichletInitVolumetricAtlas</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.DirichletInitSurfaceAtlas.html"><code class="docutils literal notranslate"><span class="pre">DirichletInitSurfaceAtlas</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.atlas.AtlasInitialiser.html"><code class="docutils literal notranslate"><span class="pre">AtlasInitialiser</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.atlasmixins.html"><code class="docutils literal notranslate"><span class="pre">atlasmixins</span></code>: Atlas mixins</a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.init.base.html"><code class="docutils literal notranslate"><span class="pre">base</span></code>: Base initialisations</a><input class="toctree-checkbox" id="toctree-checkbox-21" name="toctree-checkbox-21" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-21"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.base.from_distr_init.html"><code class="docutils literal notranslate"><span class="pre">from_distr_init</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.base.constant_init.html"><code class="docutils literal notranslate"><span class="pre">constant_init</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.base.identity_init.html"><code class="docutils literal notranslate"><span class="pre">identity_init</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.base.MappedInitialiser.html"><code class="docutils literal notranslate"><span class="pre">MappedInitialiser</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.base.DistributionInitialiser.html"><code class="docutils literal notranslate"><span class="pre">DistributionInitialiser</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.base.IdentityInitialiser.html"><code class="docutils literal notranslate"><span class="pre">IdentityInitialiser</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.deltaplus.html"><code class="docutils literal notranslate"><span class="pre">deltaplus</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.dirichlet.html"><code class="docutils literal notranslate"><span class="pre">dirichlet</span></code></a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.init.freqfilter.html"><code class="docutils literal notranslate"><span class="pre">freqfilter</span></code>: Frequency band init</a><input class="toctree-checkbox" id="toctree-checkbox-22" name="toctree-checkbox-22" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-22"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.freqfilter.FreqFilterSpec.html"><code class="docutils literal notranslate"><span class="pre">FreqFilterSpec</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.iirfilter.html"><code class="docutils literal notranslate"><span class="pre">iirfilter</span></code>: IIR filter init</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.laplace.html"><code class="docutils literal notranslate"><span class="pre">laplace</span></code></a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.init.mapparam.html"><code class="docutils literal notranslate"><span class="pre">mapparam</span></code>: Mapped parameters and parameter maps</a><input class="toctree-checkbox" id="toctree-checkbox-23" name="toctree-checkbox-23" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-23"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.MappedParameter.html"><code class="docutils literal notranslate"><span class="pre">MappedParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.DomainMappedParameter.html"><code class="docutils literal notranslate"><span class="pre">DomainMappedParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.IdentityMappedParameter.html"><code class="docutils literal notranslate"><span class="pre">IdentityMappedParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.AffineMappedParameter.html"><code class="docutils literal notranslate"><span class="pre">AffineMappedParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.TanhMappedParameter.html"><code class="docutils literal notranslate"><span class="pre">TanhMappedParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.AmplitudeTanhMappedParameter.html"><code class="docutils literal notranslate"><span class="pre">AmplitudeTanhMappedParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.MappedLogits.html"><code class="docutils literal notranslate"><span class="pre">MappedLogits</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.NormSphereParameter.html"><code class="docutils literal notranslate"><span class="pre">NormSphereParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.ProbabilitySimplexParameter.html"><code class="docutils literal notranslate"><span class="pre">ProbabilitySimplexParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.AmplitudeProbabilitySimplexParameter.html"><code class="docutils literal notranslate"><span class="pre">AmplitudeProbabilitySimplexParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.OrthogonalParameter.html"><code class="docutils literal notranslate"><span class="pre">OrthogonalParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.IsochoricParameter.html"><code class="docutils literal notranslate"><span class="pre">IsochoricParameter</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.Clip.html"><code class="docutils literal notranslate"><span class="pre">Clip</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.Renormalise.html"><code class="docutils literal notranslate"><span class="pre">Renormalise</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.ForcePositiveDefinite.html"><code class="docutils literal notranslate"><span class="pre">ForcePositiveDefinite</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.mapparam.PhaseAmplitudeMixin.html"><code class="docutils literal notranslate"><span class="pre">PhaseAmplitudeMixin</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.mpbl.html"><code class="docutils literal notranslate"><span class="pre">mpbl</span></code></a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.init.semidefinite.html"><code class="docutils literal notranslate"><span class="pre">semidefinite</span></code></a><input class="toctree-checkbox" id="toctree-checkbox-24" name="toctree-checkbox-24" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-24"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.semidefinite.TangencyInitialiser.html"><code class="docutils literal notranslate"><span class="pre">TangencyInitialiser</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.init.semidefinite.SemidefiniteMean.html"><code class="docutils literal notranslate"><span class="pre">SemidefiniteMean</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.sylo.html"><code class="docutils literal notranslate"><span class="pre">sylo</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.toeplitz.html"><code class="docutils literal notranslate"><span class="pre">toeplitz</span></code></a></li>
</ul>
</li>
<li class="toctree-l1 has-children"><a class="reference internal" href="loss.html"><code class="docutils literal notranslate"><span class="pre">loss</span></code>: Loss and regularisation</a><input class="toctree-checkbox" id="toctree-checkbox-25" name="toctree-checkbox-25" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-25"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.Loss.html"><code class="docutils literal notranslate"><span class="pre">Loss</span></code>: Base class for scalar-valued losses</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.ParameterisedLoss.html"><code class="docutils literal notranslate"><span class="pre">ParameterisedLoss</span></code>: Extensible class for custom parameterised losses</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.MSELoss.html"><code class="docutils literal notranslate"><span class="pre">MSELoss</span></code>: Mean squared error</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.NormedLoss.html"><code class="docutils literal notranslate"><span class="pre">NormedLoss</span></code>: Normed parameter regularisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.identity.html"><code class="docutils literal notranslate"><span class="pre">identity</span></code>: Identity function</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.zero.html"><code class="docutils literal notranslate"><span class="pre">zero</span></code>: Zero function</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.difference.html"><code class="docutils literal notranslate"><span class="pre">difference</span></code>: Elementwise difference</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.constraint_violation.html"><code class="docutils literal notranslate"><span class="pre">constraint_violation</span></code>: Soft constraints</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.unilateral_loss.html"><code class="docutils literal notranslate"><span class="pre">unilateral_loss</span></code>: Unilateral penalties</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.hinge_loss.html"><code class="docutils literal notranslate"><span class="pre">hinge_loss</span></code>: SVM hinge loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.smoothness.html"><code class="docutils literal notranslate"><span class="pre">smoothness</span></code>: Backwards differences</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.bimodal_symmetric.html"><code class="docutils literal notranslate"><span class="pre">bimodal_symmetric</span></code>: Minimal distance from 2 modes</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.det_gram.html"><code class="docutils literal notranslate"><span class="pre">det_gram</span></code>: Gramian determinant</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.log_det_gram.html"><code class="docutils literal notranslate"><span class="pre">log_det_gram</span></code>: Gram log-determinant loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.entropy.html"><code class="docutils literal notranslate"><span class="pre">entropy</span></code>: Categorical entropy</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.kl_divergence.html"><code class="docutils literal notranslate"><span class="pre">kl_divergence</span></code>: Kullback-Leibler divergence</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.js_divergence.html"><code class="docutils literal notranslate"><span class="pre">js_divergence</span></code>: Jensen-Shannon divergence</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.bregman_divergence.html"><code class="docutils literal notranslate"><span class="pre">bregman_divergence</span></code>: Bregman divergences</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.equilibrium.html"><code class="docutils literal notranslate"><span class="pre">equilibrium</span></code>: Equilibrium loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.second_moment.html"><code class="docutils literal notranslate"><span class="pre">second_moment</span></code>: Second moments</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.auto_tol.html"><code class="docutils literal notranslate"><span class="pre">auto_tol</span></code>: Significance tolerance</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.batch_corr.html"><code class="docutils literal notranslate"><span class="pre">batch_corr</span></code>: Batch-axis correlation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.qcfc.html"><code class="docutils literal notranslate"><span class="pre">qcfc</span></code>: QC-FC measures and loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.reference_tether.html"><code class="docutils literal notranslate"><span class="pre">reference_tether</span></code>: Spatial tether to reference points</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.interhemispheric_tether.html"><code class="docutils literal notranslate"><span class="pre">interhemispheric_tether</span></code>: Inter-hemispheric tethering loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.compactness.html"><code class="docutils literal notranslate"><span class="pre">compactness</span></code>: Compactness</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.dispersion.html"><code class="docutils literal notranslate"><span class="pre">dispersion</span></code>: Vector dispersion</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.multivariate_kurtosis.html"><code class="docutils literal notranslate"><span class="pre">multivariate_kurtosis</span></code>: Time series stationarity</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.connectopy.html"><code class="docutils literal notranslate"><span class="pre">connectopy</span></code>: Generalised connectopy</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.modularity.html"><code class="docutils literal notranslate"><span class="pre">modularity</span></code>: Relaxed modularity</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.sum_scalarise.html"><code class="docutils literal notranslate"><span class="pre">sum_scalarise</span></code>: Sum scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.mean_scalarise.html"><code class="docutils literal notranslate"><span class="pre">mean_scalarise</span></code>: Mean scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.meansq_scalarise.html"><code class="docutils literal notranslate"><span class="pre">meansq_scalarise</span></code>: Squared mean scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.max_scalarise.html"><code class="docutils literal notranslate"><span class="pre">max_scalarise</span></code>: Maximum-value scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.norm_scalarise.html"><code class="docutils literal notranslate"><span class="pre">norm_scalarise</span></code>: Norm scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.vnorm_scalarise.html"><code class="docutils literal notranslate"><span class="pre">vnorm_scalarise</span></code>: Vector norm scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.wmean_scalarise.html"><code class="docutils literal notranslate"><span class="pre">wmean_scalarise</span></code>: Weighted mean scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.selfwmean_scalarise.html"><code class="docutils literal notranslate"><span class="pre">selfwmean_scalarise</span></code>: Self-weighted mean scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scheme.LossApply.html"><code class="docutils literal notranslate"><span class="pre">LossApply</span></code>: Selectively apply loss to parameters</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scheme.LossScheme.html"><code class="docutils literal notranslate"><span class="pre">LossScheme</span></code>: Scheme for multiple losses</a></li>
</ul>
</li>
<li class="toctree-l1 has-children"><a class="reference internal" href="neuro.html"><code class="docutils literal notranslate"><span class="pre">neuro</span></code>: Neuroscience data utilities</a><input class="toctree-checkbox" id="toctree-checkbox-26" name="toctree-checkbox-26" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-26"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.neuro.synth.html"><code class="docutils literal notranslate"><span class="pre">synth</span></code>: Data synthesis</a><input class="toctree-checkbox" id="toctree-checkbox-27" name="toctree-checkbox-27" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-27"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.neuro.synth.match_spectra.html"><code class="docutils literal notranslate"><span class="pre">match_spectra</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.neuro.synth.match_covariance.html"><code class="docutils literal notranslate"><span class="pre">match_covariance</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.neuro.synth.match_reference.html"><code class="docutils literal notranslate"><span class="pre">match_reference</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.neuro.synth.match_cov_and_spectrum.html"><code class="docutils literal notranslate"><span class="pre">match_cov_and_spectrum</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.neuro.synth.synthesise_matched.html"><code class="docutils literal notranslate"><span class="pre">synthesise_matched</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.neuro.synth.synthesise_from_cov_and_spectrum.html"><code class="docutils literal notranslate"><span class="pre">synthesise_from_cov_and_spectrum</span></code></a></li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l1 has-children"><a class="reference internal" href="nn.html"><code class="docutils literal notranslate"><span class="pre">nn</span></code>: Neural network modules</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-28"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.nn.activation.html"><code class="docutils literal notranslate"><span class="pre">activation</span></code>: Activation functions as modules</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-29"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.activation.CorrelationNorm.html"><code class="docutils literal notranslate"><span class="pre">CorrelationNorm</span></code>: Correlation normalisation</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.activation.Isochor.html"><code class="docutils literal notranslate"><span class="pre">Isochor</span></code>: Isochoric normalisation</a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.nn.atlas.html"><code class="docutils literal notranslate"><span class="pre">atlas</span></code>: Atlas layers</a><input class="toctree-checkbox" id="toctree-checkbox-30" name="toctree-checkbox-30" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-30"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.atlas.AtlasLinear.html"><code class="docutils literal notranslate"><span class="pre">AtlasLinear</span></code>: Linear atlas layer</a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.nn.cov.html"><code class="docutils literal notranslate"><span class="pre">cov</span></code>: Covariance modules</a><input class="toctree-checkbox" id="toctree-checkbox-31" name="toctree-checkbox-31" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-31"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.cov.BaseCovariance.html"><code class="docutils literal notranslate"><span class="pre">BaseCovariance</span></code>: Covariance base class</a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.cov.UnaryCovariance.html"><code class="docutils literal notranslate"><span class="pre">UnaryCovariance</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.cov.UnaryCovarianceTW.html"><code class="docutils literal notranslate"><span class="pre">UnaryCovarianceTW</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.cov.UnaryCovarianceUW.html"><code class="docutils literal notranslate"><span class="pre">UnaryCovarianceUW</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.cov.BinaryCovariance.html"><code class="docutils literal notranslate"><span class="pre">BinaryCovariance</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.cov.BinaryCovarianceTW.html"><code class="docutils literal notranslate"><span class="pre">BinaryCovarianceTW</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.cov.BinaryCovarianceUW.html"><code class="docutils literal notranslate"><span class="pre">BinaryCovarianceUW</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.freqfilter.FrequencyDomainFilter.html"><code class="docutils literal notranslate"><span class="pre">freqfilter</span></code>: Frequency-domain filter layer</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.iirfilter.html"><code class="docutils literal notranslate"><span class="pre">iirfilter</span></code>: IIR filter layer</a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.nn.interpolate.html"><code class="docutils literal notranslate"><span class="pre">interpolate</span></code>: Interpolation layers</a><input class="toctree-checkbox" id="toctree-checkbox-32" name="toctree-checkbox-32" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-32"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.interpolate.SpectralInterpolate.html"><code class="docutils literal notranslate"><span class="pre">SpectralInterpolate</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.interpolate.LinearInterpolate.html"><code class="docutils literal notranslate"><span class="pre">LinearInterpolate</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.interpolate.HybridInterpolate.html"><code class="docutils literal notranslate"><span class="pre">HybridInterpolate</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.nn.recombinator.html"><code class="docutils literal notranslate"><span class="pre">recombinator</span></code></a><input class="toctree-checkbox" id="toctree-checkbox-33" name="toctree-checkbox-33" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-33"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.recombinator.Recombinator.html"><code class="docutils literal notranslate"><span class="pre">Recombinator</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.resid.Residualise.html"><code class="docutils literal notranslate"><span class="pre">Residualise</span></code></a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.nn.semidefinite.html"><code class="docutils literal notranslate"><span class="pre">semidefinite</span></code></a><input class="toctree-checkbox" id="toctree-checkbox-34" name="toctree-checkbox-34" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-34"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.semidefinite.TangentProject.html"><code class="docutils literal notranslate"><span class="pre">TangentProject</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.semidefinite.BatchTangentProject.html"><code class="docutils literal notranslate"><span class="pre">BatchTangentProject</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.spdnoise.SPDNoise.html"><code class="docutils literal notranslate"><span class="pre">SPDNoise</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.svm.SVM.html"><code class="docutils literal notranslate"><span class="pre">SVM</span></code></a></li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.nn.sylo.html"><code class="docutils literal notranslate"><span class="pre">sylo</span></code></a><input class="toctree-checkbox" id="toctree-checkbox-35" name="toctree-checkbox-35" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-35"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.sylo.Sylo.html"><code class="docutils literal notranslate"><span class="pre">Sylo</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.sylo.SyloResNet.html"><code class="docutils literal notranslate"><span class="pre">SyloResNet</span></code></a></li>
</ul>
</li>
<li class="toctree-l2 has-children"><a class="reference internal" href="api/hypercoil.nn.vertcom.html"><code class="docutils literal notranslate"><span class="pre">vertcom</span></code>: Vertex compression</a><input class="toctree-checkbox" id="toctree-checkbox-36" name="toctree-checkbox-36" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-36"><i class="fa-solid fa-chevron-down"></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="api/hypercoil.nn.vertcom.VerticalCompression.html"><code class="docutils literal notranslate"><span class="pre">VerticalCompression</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.window.WindowAmplifier.html"><code class="docutils literal notranslate"><span class="pre">WindowAmplifier</span></code></a></li>
</ul>
</li>
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<section id="api-reference">
<h1>API reference<a class="headerlink" href="#api-reference" title="Link to this heading">#</a></h1>
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="engine.html"><code class="docutils literal notranslate"><span class="pre">engine</span></code>: Differentiable engine</a><ul class="simple">
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="functional.html"><code class="docutils literal notranslate"><span class="pre">functional</span></code>: Functions and functionals</a><ul>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.activation.html"><code class="docutils literal notranslate"><span class="pre">activation</span></code>: Activation functions</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.cmass.html"><code class="docutils literal notranslate"><span class="pre">cmass</span></code>: Centre of mass</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.connectopy.html"><code class="docutils literal notranslate"><span class="pre">connectopy</span></code>: Connectopic manifolds</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.cov.html"><code class="docutils literal notranslate"><span class="pre">cov</span></code>: Covariances and correlations</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.fourier.html"><code class="docutils literal notranslate"><span class="pre">fourier</span></code>: Frequency-domain filter</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.graph.html"><code class="docutils literal notranslate"><span class="pre">graph</span></code>: Graphs and networks</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.interpolate.html"><code class="docutils literal notranslate"><span class="pre">interpolate</span></code>: Interpolation and imputation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.kernel.html"><code class="docutils literal notranslate"><span class="pre">kernel</span></code>: Parameterised kernels</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.matrix.html"><code class="docutils literal notranslate"><span class="pre">matrix</span></code>: Matrix operations</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.resid.residualise.html"><code class="docutils literal notranslate"><span class="pre">residualise</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.semidefinite.html"><code class="docutils literal notranslate"><span class="pre">semidefinite</span></code>: Positive semidefinite cone</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.sparse.html"><code class="docutils literal notranslate"><span class="pre">sparse</span></code>: Sparse matrix operations</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.sphere.html"><code class="docutils literal notranslate"><span class="pre">sphere</span></code>: Spherical coordinates</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.sylo.html"><code class="docutils literal notranslate"><span class="pre">sylo</span></code>: Sylo function</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.symmap.html"><code class="docutils literal notranslate"><span class="pre">symmap</span></code>: Symmetric matrix maps</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.tsconv.html"><code class="docutils literal notranslate"><span class="pre">tsconv</span></code>: Time series convolution</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.utils.html"><code class="docutils literal notranslate"><span class="pre">utils</span></code>: Miscellaneous</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.functional.window.html"><code class="docutils literal notranslate"><span class="pre">window</span></code>: Random windowing</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="init.html"><code class="docutils literal notranslate"><span class="pre">init</span></code>: Initialisation schemes</a><ul>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.atlas.html"><code class="docutils literal notranslate"><span class="pre">atlas</span></code>: Atlas initialisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.atlasmixins.html"><code class="docutils literal notranslate"><span class="pre">atlasmixins</span></code>: Atlas mixins</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.base.html"><code class="docutils literal notranslate"><span class="pre">base</span></code>: Base initialisations</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.deltaplus.html"><code class="docutils literal notranslate"><span class="pre">deltaplus</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.dirichlet.html"><code class="docutils literal notranslate"><span class="pre">dirichlet</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.freqfilter.html"><code class="docutils literal notranslate"><span class="pre">freqfilter</span></code>: Frequency band init</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.iirfilter.html"><code class="docutils literal notranslate"><span class="pre">iirfilter</span></code>: IIR filter init</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.laplace.html"><code class="docutils literal notranslate"><span class="pre">laplace</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.mapparam.html"><code class="docutils literal notranslate"><span class="pre">mapparam</span></code>: Mapped parameters and parameter maps</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.mpbl.html"><code class="docutils literal notranslate"><span class="pre">mpbl</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.semidefinite.html"><code class="docutils literal notranslate"><span class="pre">semidefinite</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.sylo.html"><code class="docutils literal notranslate"><span class="pre">sylo</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.init.toeplitz.html"><code class="docutils literal notranslate"><span class="pre">toeplitz</span></code></a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="loss.html"><code class="docutils literal notranslate"><span class="pre">loss</span></code>: Loss and regularisation</a><ul>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.Loss.html"><code class="docutils literal notranslate"><span class="pre">Loss</span></code>: Base class for scalar-valued losses</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.ParameterisedLoss.html"><code class="docutils literal notranslate"><span class="pre">ParameterisedLoss</span></code>: Extensible class for custom parameterised losses</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.MSELoss.html"><code class="docutils literal notranslate"><span class="pre">MSELoss</span></code>: Mean squared error</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.NormedLoss.html"><code class="docutils literal notranslate"><span class="pre">NormedLoss</span></code>: Normed parameter regularisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.identity.html"><code class="docutils literal notranslate"><span class="pre">identity</span></code>: Identity function</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.zero.html"><code class="docutils literal notranslate"><span class="pre">zero</span></code>: Zero function</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.difference.html"><code class="docutils literal notranslate"><span class="pre">difference</span></code>: Elementwise difference</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.constraint_violation.html"><code class="docutils literal notranslate"><span class="pre">constraint_violation</span></code>: Soft constraints</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.unilateral_loss.html"><code class="docutils literal notranslate"><span class="pre">unilateral_loss</span></code>: Unilateral penalties</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.hinge_loss.html"><code class="docutils literal notranslate"><span class="pre">hinge_loss</span></code>: SVM hinge loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.smoothness.html"><code class="docutils literal notranslate"><span class="pre">smoothness</span></code>: Backwards differences</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.bimodal_symmetric.html"><code class="docutils literal notranslate"><span class="pre">bimodal_symmetric</span></code>: Minimal distance from 2 modes</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.det_gram.html"><code class="docutils literal notranslate"><span class="pre">det_gram</span></code>: Gramian determinant</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.log_det_gram.html"><code class="docutils literal notranslate"><span class="pre">log_det_gram</span></code>: Gram log-determinant loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.entropy.html"><code class="docutils literal notranslate"><span class="pre">entropy</span></code>: Categorical entropy</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.kl_divergence.html"><code class="docutils literal notranslate"><span class="pre">kl_divergence</span></code>: Kullback-Leibler divergence</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.js_divergence.html"><code class="docutils literal notranslate"><span class="pre">js_divergence</span></code>: Jensen-Shannon divergence</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.bregman_divergence.html"><code class="docutils literal notranslate"><span class="pre">bregman_divergence</span></code>: Bregman divergences</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.equilibrium.html"><code class="docutils literal notranslate"><span class="pre">equilibrium</span></code>: Equilibrium loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.second_moment.html"><code class="docutils literal notranslate"><span class="pre">second_moment</span></code>: Second moments</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.auto_tol.html"><code class="docutils literal notranslate"><span class="pre">auto_tol</span></code>: Significance tolerance</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.batch_corr.html"><code class="docutils literal notranslate"><span class="pre">batch_corr</span></code>: Batch-axis correlation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.qcfc.html"><code class="docutils literal notranslate"><span class="pre">qcfc</span></code>: QC-FC measures and loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.reference_tether.html"><code class="docutils literal notranslate"><span class="pre">reference_tether</span></code>: Spatial tether to reference points</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.interhemispheric_tether.html"><code class="docutils literal notranslate"><span class="pre">interhemispheric_tether</span></code>: Inter-hemispheric tethering loss</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.compactness.html"><code class="docutils literal notranslate"><span class="pre">compactness</span></code>: Compactness</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.dispersion.html"><code class="docutils literal notranslate"><span class="pre">dispersion</span></code>: Vector dispersion</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.multivariate_kurtosis.html"><code class="docutils literal notranslate"><span class="pre">multivariate_kurtosis</span></code>: Time series stationarity</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.connectopy.html"><code class="docutils literal notranslate"><span class="pre">connectopy</span></code>: Generalised connectopy</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.modularity.html"><code class="docutils literal notranslate"><span class="pre">modularity</span></code>: Relaxed modularity</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.sum_scalarise.html"><code class="docutils literal notranslate"><span class="pre">sum_scalarise</span></code>: Sum scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.mean_scalarise.html"><code class="docutils literal notranslate"><span class="pre">mean_scalarise</span></code>: Mean scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.meansq_scalarise.html"><code class="docutils literal notranslate"><span class="pre">meansq_scalarise</span></code>: Squared mean scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.max_scalarise.html"><code class="docutils literal notranslate"><span class="pre">max_scalarise</span></code>: Maximum-value scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.norm_scalarise.html"><code class="docutils literal notranslate"><span class="pre">norm_scalarise</span></code>: Norm scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.vnorm_scalarise.html"><code class="docutils literal notranslate"><span class="pre">vnorm_scalarise</span></code>: Vector norm scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.wmean_scalarise.html"><code class="docutils literal notranslate"><span class="pre">wmean_scalarise</span></code>: Weighted mean scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scalarise.selfwmean_scalarise.html"><code class="docutils literal notranslate"><span class="pre">selfwmean_scalarise</span></code>: Self-weighted mean scalarisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scheme.LossApply.html"><code class="docutils literal notranslate"><span class="pre">LossApply</span></code>: Selectively apply loss to parameters</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.loss.scheme.LossScheme.html"><code class="docutils literal notranslate"><span class="pre">LossScheme</span></code>: Scheme for multiple losses</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="neuro.html"><code class="docutils literal notranslate"><span class="pre">neuro</span></code>: Neuroscience data utilities</a><ul>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.neuro.synth.html"><code class="docutils literal notranslate"><span class="pre">synth</span></code>: Data synthesis</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="nn.html"><code class="docutils literal notranslate"><span class="pre">nn</span></code>: Neural network modules</a><ul>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.activation.html"><code class="docutils literal notranslate"><span class="pre">activation</span></code>: Activation functions as modules</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.atlas.html"><code class="docutils literal notranslate"><span class="pre">atlas</span></code>: Atlas layers</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.cov.html"><code class="docutils literal notranslate"><span class="pre">cov</span></code>: Covariance modules</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.freqfilter.FrequencyDomainFilter.html"><code class="docutils literal notranslate"><span class="pre">freqfilter</span></code>: Frequency-domain filter layer</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.iirfilter.html"><code class="docutils literal notranslate"><span class="pre">iirfilter</span></code>: IIR filter layer</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.interpolate.html"><code class="docutils literal notranslate"><span class="pre">interpolate</span></code>: Interpolation layers</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.recombinator.html"><code class="docutils literal notranslate"><span class="pre">recombinator</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.resid.Residualise.html"><code class="docutils literal notranslate"><span class="pre">Residualise</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.semidefinite.html"><code class="docutils literal notranslate"><span class="pre">semidefinite</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.spdnoise.SPDNoise.html"><code class="docutils literal notranslate"><span class="pre">SPDNoise</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.svm.SVM.html"><code class="docutils literal notranslate"><span class="pre">SVM</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.sylo.html"><code class="docutils literal notranslate"><span class="pre">sylo</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.vertcom.html"><code class="docutils literal notranslate"><span class="pre">vertcom</span></code>: Vertex compression</a></li>
<li class="toctree-l2"><a class="reference internal" href="api/hypercoil.nn.window.WindowAmplifier.html"><code class="docutils literal notranslate"><span class="pre">WindowAmplifier</span></code></a></li>
</ul>
</li>
</ul>
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