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hyginn

New EDA unit - regression: cor(), lm() and nls()

Nov 23, 2022

5efdc7c · Nov 23, 2022

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Name		Name	Last commit message	Last commit date
parent directory ..
0TST.pdb		0TST.pdb	New unit - regex practice and sample file	Oct 2, 2017
1BM8.pdb		1BM8.pdb	Data for RPR-SX-PDB unit	Oct 22, 2017
2F1C.fa		2F1C.fa	New unit and associated FASTA files	Oct 23, 2017
3FG7.fa		3FG7.fa	New unit and associated FASTA files	Oct 23, 2017
BLASThits.2022-09-22.rds		BLASThits.2022-09-22.rds	Make 2022 MYSPE table	Sep 23, 2022
BLASThits.rds		BLASThits.rds	Update MYSPE datasets	Sep 18, 2021
GCF_000146045.2_R64.augustus.gtf		GCF_000146045.2_R64.augustus.gtf	UCSC yeast genes dataset	Sep 28, 2022
GSE3635.rds		GSE3635.rds	Updated MYSPE data and entire workflow. Changed all .RData to .rds	Sep 21, 2020
KRAS_HSa_coding.fa		KRAS_HSa_coding.fa	Data files for ABC-INT-Mutation_impact integrator unit	Oct 17, 2017
MBP1SACCE_gene.rds		MBP1SACCE_gene.rds	Major rewrite	Oct 10, 2022
MBP1_SACCE.json		MBP1_SACCE.json	JSON data sources	Sep 25, 2017
MYSPEdat.rds		MYSPEdat.rds	Make 2022 MYSPE table	Sep 23, 2022
OR1A1_HSa_coding.fa		OR1A1_HSa_coding.fa	Data files for ABC-INT-Mutation_impact integrator unit	Oct 17, 2017
PTPN11_HSa_coding.fa		PTPN11_HSa_coding.fa	Data files for ABC-INT-Mutation_impact integrator unit	Oct 17, 2017
PTPN5_HSa_coding.fa		PTPN5_HSa_coding.fa	mRNA for Mutation-effect IA: controls	Oct 1, 2020
RAB39B_HSa_coding.fa		RAB39B_HSa_coding.fa	mRNA for Mutation-effect IA: controls	Oct 1, 2020
REFdat.rds		REFdat.rds	Make 2022 MYSPE table	Sep 23, 2022
RandomPhobiaPage.txt		RandomPhobiaPage.txt	Contents for a sample .Rmd page	Sep 26, 2020
S.cerevisiae.GenomeGenesBiomart.csv		S.cerevisiae.GenomeGenesBiomart.csv	ensembl Biomart yeast genes dataset	Sep 28, 2022
S288C_YDL056W_MBP1_coding.fsa		S288C_YDL056W_MBP1_coding.fsa	Genetic code unit and data	Sep 28, 2017
SC.rds		SC.rds	New plotting reference and associated integrated dataset	Oct 6, 2020
SGD_features.README.txt		SGD_features.README.txt	New unit and associated data	Nov 12, 2017
SGD_features.tab		SGD_features.tab	New unit and associated data	Nov 12, 2017
STRINGedges.rds		STRINGedges.rds	Update PPI-Analysis assets and code	Sep 23, 2020
Species.csv		Species.csv	Make 2022 MYSPE table	Sep 23, 2022
aminoAcids.csv		aminoAcids.csv	sample data	Jan 7, 2019
aminoAcids.xls		aminoAcids.xls	sample data	Jan 7, 2019
intogen-KRAS-distribution-data.tsv		intogen-KRAS-distribution-data.tsv	Data files for ABC-INT-Mutation_impact integrator unit	Oct 17, 2017
intogen-OR1A1-distribution-data.tsv		intogen-OR1A1-distribution-data.tsv	Data files for ABC-INT-Mutation_impact integrator unit	Oct 17, 2017
intogen-PTPN11-distribution-data.tsv		intogen-PTPN11-distribution-data.tsv	Data files for ABC-INT-Mutation_impact integrator unit	Oct 17, 2017
myCodons.rds		myCodons.rds	Updated MYSPE data and entire workflow. Changed all .RData to .rds	Sep 21, 2020
nlsParams.RData		nlsParams.RData	New EDA unit - regression: cor(), lm() and nls()	Nov 23, 2022
pdbRep.rds		pdbRep.rds	Updated MYSPE data and entire workflow. Changed all .RData to .rds	Sep 21, 2020
refAPSES.mfa		refAPSES.mfa	Removed vacous blanks from spacing lines	Sep 24, 2020
refAPSES_PSI-BLAST.json		refAPSES_PSI-BLAST.json	Added data files for PSI-BLAST unit, updated some other JSONs	Oct 24, 2017
refAnnotations.json		refAnnotations.json	remove duplicate annotation	Oct 13, 2020
refDB.rds		refDB.rds	Updated MYSPE data and entire workflow. Changed all .RData to .rds	Sep 21, 2020
refFeatures.json		refFeatures.json	JSON data sources	Sep 25, 2017
refMBP1Proteins.json		refMBP1Proteins.json	Added data files for PSI-BLAST unit, updated some other JSONs	Oct 24, 2017
refTaxonomy.json		refTaxonomy.json	Added data files for PSI-BLAST unit, updated some other JSONs	Oct 24, 2017
referenceDomainAnnotations.txt		referenceDomainAnnotations.txt	JSON data sources	Sep 25, 2017
sDat.rds		sDat.rds	Make 2022 MYSPE table	Sep 23, 2022
scCCnet.rds		scCCnet.rds	Update the ScCC network data	Sep 23, 2020
ygData.RData		ygData.RData	New EDA unit - regression: cor(), lm() and nls()	Nov 23, 2022
ygProfiles.RData		ygProfiles.RData	New EDA unit - regression: cor(), lm() and nls()	Nov 23, 2022
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