poetry.lock

[[package]]
name = "aiohttp"
version = "3.8.3"
description = "Async http client/server framework (asyncio)"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
aiosignal = ">=1.1.2"
async-timeout = ">=4.0.0a3,<5.0"
attrs = ">=17.3.0"
charset-normalizer = ">=2.0,<3.0"
frozenlist = ">=1.1.1"
multidict = ">=4.5,<7.0"
yarl = ">=1.0,<2.0"

[package.extras]
speedups = ["Brotli", "aiodns", "cchardet"]

[[package]]
name = "aiosignal"
version = "1.2.0"
description = "aiosignal: a list of registered asynchronous callbacks"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
frozenlist = ">=1.1.0"

[[package]]
name = "alabaster"
version = "0.7.12"
description = "A configurable sidebar-enabled Sphinx theme"
category = "dev"
optional = false
python-versions = "*"

[[package]]
name = "argcomplete"
version = "2.0.0"
description = "Bash tab completion for argparse"
category = "dev"
optional = false
python-versions = ">=3.6"

[package.extras]
test = ["coverage", "flake8", "pexpect", "wheel"]

[[package]]
name = "async-timeout"
version = "4.0.2"
description = "Timeout context manager for asyncio programs"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "attrs"
version = "22.1.0"
description = "Classes Without Boilerplate"
category = "main"
optional = false
python-versions = ">=3.5"

[package.extras]
dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"]
docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"]
tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"]
tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]

[[package]]
name = "babel"
version = "2.10.3"
description = "Internationalization utilities"
category = "dev"
optional = false
python-versions = ">=3.6"

[package.dependencies]
pytz = ">=2015.7"

[[package]]
name = "backoff"
version = "2.2.1"
description = "Function decoration for backoff and retry"
category = "main"
optional = false
python-versions = ">=3.7,<4.0"

[[package]]
name = "bandit"
version = "1.7.4"
description = "Security oriented static analyser for python code."
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
colorama = {version = ">=0.3.9", markers = "platform_system == \"Windows\""}
GitPython = ">=1.0.1"
PyYAML = ">=5.3.1"
stevedore = ">=1.20.0"

[package.extras]
test = ["beautifulsoup4 (>=4.8.0)", "coverage (>=4.5.4)", "fixtures (>=3.0.0)", "flake8 (>=4.0.0)", "pylint (==1.9.4)", "stestr (>=2.5.0)", "testscenarios (>=0.5.0)", "testtools (>=2.3.0)", "toml"]
toml = ["toml"]
yaml = ["PyYAML"]

[[package]]
name = "beautifulsoup4"
version = "4.11.1"
description = "Screen-scraping library"
category = "dev"
optional = false
python-versions = ">=3.6.0"

[package.dependencies]
soupsieve = ">1.2"

[package.extras]
html5lib = ["html5lib"]
lxml = ["lxml"]

[[package]]
name = "biopython"
version = "1.79"
description = "Freely available tools for computational molecular biology."
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
numpy = "*"

[[package]]
name = "black"
version = "22.10.0"
description = "The uncompromising code formatter."
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
click = ">=8.0.0"
mypy-extensions = ">=0.4.3"
pathspec = ">=0.9.0"
platformdirs = ">=2"
tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""}
typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}

[package.extras]
colorama = ["colorama (>=0.4.3)"]
d = ["aiohttp (>=3.7.4)"]
jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
uvloop = ["uvloop (>=0.15.2)"]

[[package]]
name = "botocore"
version = "1.27.92"
description = "Low-level, data-driven core of boto 3."
category = "main"
optional = false
python-versions = ">= 3.7"

[package.dependencies]
jmespath = ">=0.7.1,<2.0.0"
python-dateutil = ">=2.1,<3.0.0"
urllib3 = ">=1.25.4,<1.27"

[package.extras]
crt = ["awscrt (==0.14.0)"]

[[package]]
name = "certifi"
version = "2022.9.24"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "cfgv"
version = "3.3.1"
description = "Validate configuration and produce human readable error messages."
category = "dev"
optional = false
python-versions = ">=3.6.1"

[[package]]
name = "charset-normalizer"
version = "2.1.1"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
category = "main"
optional = false
python-versions = ">=3.6.0"

[package.extras]
unicode-backport = ["unicodedata2"]

[[package]]
name = "click"
version = "8.1.3"
description = "Composable command line interface toolkit"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
colorama = {version = "*", markers = "platform_system == \"Windows\""}

[[package]]
name = "colorama"
version = "0.4.5"
description = "Cross-platform colored terminal text."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

[[package]]
name = "colorlog"
version = "6.7.0"
description = "Add colours to the output of Python's logging module."
category = "dev"
optional = false
python-versions = ">=3.6"

[package.dependencies]
colorama = {version = "*", markers = "sys_platform == \"win32\""}

[package.extras]
development = ["black", "flake8", "mypy", "pytest", "types-colorama"]

[[package]]
name = "contextlib2"
version = "21.6.0"
description = "Backports and enhancements for the contextlib module"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "contourpy"
version = "1.0.5"
description = "Python library for calculating contours of 2D quadrilateral grids"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
numpy = ">=1.16"

[package.extras]
bokeh = ["bokeh", "selenium"]
docs = ["docutils (<0.18)", "sphinx", "sphinx-rtd-theme"]
test = ["Pillow", "flake8", "isort", "matplotlib", "pytest"]
test-minimal = ["pytest"]
test-no-codebase = ["Pillow", "matplotlib", "pytest"]

[[package]]
name = "coverage"
version = "6.5.0"
description = "Code coverage measurement for Python"
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}

[package.extras]
toml = ["tomli"]

[[package]]
name = "cycler"
version = "0.11.0"
description = "Composable style cycles"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "darglint"
version = "1.8.1"
description = "A utility for ensuring Google-style docstrings stay up to date with the source code."
category = "dev"
optional = false
python-versions = ">=3.6,<4.0"

[[package]]
name = "distlib"
version = "0.3.6"
description = "Distribution utilities"
category = "dev"
optional = false
python-versions = "*"

[[package]]
name = "docutils"
version = "0.19"
description = "Docutils -- Python Documentation Utilities"
category = "dev"
optional = false
python-versions = ">=3.7"

[[package]]
name = "dotli"
version = "1.1"
description = "An easy way to flatten and unflatten dicts and lists"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "dparse"
version = "0.6.2"
description = "A parser for Python dependency files"
category = "dev"
optional = false
python-versions = ">=3.5"

[package.dependencies]
packaging = "*"
toml = "*"

[package.extras]
conda = ["pyyaml"]
pipenv = ["pipenv"]

[[package]]
name = "dynaconf"
version = "3.1.11"
description = "The dynamic configurator for your Python Project"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
all = ["configobj", "hvac", "redis", "ruamel.yaml"]
configobj = ["configobj"]
ini = ["configobj"]
redis = ["redis"]
test = ["codecov", "configobj", "django", "flake8", "flake8-debugger", "flake8-print", "flake8-todo", "flask (>=0.12)", "hvac", "pep8-naming", "pytest", "pytest-cov", "pytest-mock", "pytest-xdist", "python-dotenv", "radon", "redis", "toml"]
toml = ["toml"]
vault = ["hvac"]
yaml = ["ruamel.yaml"]

[[package]]
name = "filelock"
version = "3.8.0"
description = "A platform independent file lock."
category = "dev"
optional = false
python-versions = ">=3.7"

[package.extras]
docs = ["furo (>=2022.6.21)", "sphinx (>=5.1.1)", "sphinx-autodoc-typehints (>=1.19.1)"]
testing = ["covdefaults (>=2.2)", "coverage (>=6.4.2)", "pytest (>=7.1.2)", "pytest-cov (>=3)", "pytest-timeout (>=2.1)"]

[[package]]
name = "flake8"
version = "5.0.4"
description = "the modular source code checker: pep8 pyflakes and co"
category = "dev"
optional = false
python-versions = ">=3.6.1"

[package.dependencies]
mccabe = ">=0.7.0,<0.8.0"
pycodestyle = ">=2.9.0,<2.10.0"
pyflakes = ">=2.5.0,<2.6.0"

[[package]]
name = "flake8-bandit"
version = "4.1.1"
description = "Automated security testing with bandit and flake8."
category = "dev"
optional = false
python-versions = ">=3.6"

[package.dependencies]
bandit = ">=1.7.3"
flake8 = ">=5.0.0"

[[package]]
name = "flake8-bugbear"
version = "22.9.23"
description = "A plugin for flake8 finding likely bugs and design problems in your program. Contains warnings that don't belong in pyflakes and pycodestyle."
category = "dev"
optional = false
python-versions = ">=3.6"

[package.dependencies]
attrs = ">=19.2.0"
flake8 = ">=3.0.0"

[package.extras]
dev = ["coverage", "hypothesis", "hypothesmith (>=0.2)", "pre-commit"]

[[package]]
name = "flake8-docstrings"
version = "1.6.0"
description = "Extension for flake8 which uses pydocstyle to check docstrings"
category = "dev"
optional = false
python-versions = "*"

[package.dependencies]
flake8 = ">=3"
pydocstyle = ">=2.1"

[[package]]
name = "flake8-rst-docstrings"
version = "0.2.7"
description = "Python docstring reStructuredText (RST) validator"
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
flake8 = ">=3.0.0"
pygments = "*"
restructuredtext-lint = "*"

[[package]]
name = "fonttools"
version = "4.37.4"
description = "Tools to manipulate font files"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=14.0.0)", "xattr", "zopfli (>=0.1.4)"]
graphite = ["lz4 (>=1.7.4.2)"]
interpolatable = ["munkres", "scipy"]
lxml = ["lxml (>=4.0,<5)"]
pathops = ["skia-pathops (>=0.5.0)"]
plot = ["matplotlib"]
repacker = ["uharfbuzz (>=0.23.0)"]
symfont = ["sympy"]
type1 = ["xattr"]
ufo = ["fs (>=2.2.0,<3)"]
unicode = ["unicodedata2 (>=14.0.0)"]
woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]

[[package]]
name = "frozenlist"
version = "1.3.1"
description = "A list-like structure which implements collections.abc.MutableSequence"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "furo"
version = "2022.9.29"
description = "A clean customisable Sphinx documentation theme."
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
beautifulsoup4 = "*"
pygments = ">=2.7"
sphinx = ">=4.0,<6.0"
sphinx-basic-ng = "*"

[[package]]
name = "future"
version = "0.18.2"
description = "Clean single-source support for Python 3 and 2"
category = "main"
optional = false
python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"

[[package]]
name = "gemmi"
version = "0.5.7"
description = "library for structural biology"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "gitdb"
version = "4.0.9"
description = "Git Object Database"
category = "dev"
optional = false
python-versions = ">=3.6"

[package.dependencies]
smmap = ">=3.0.1,<6"

[[package]]
name = "gitpython"
version = "3.1.29"
description = "GitPython is a python library used to interact with Git repositories"
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
gitdb = ">=4.0.1,<5"

[[package]]
name = "gql"
version = "3.4.0"
description = "GraphQL client for Python"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
aiohttp = {version = ">=3.7.1,<3.9.0", optional = true, markers = "extra == \"all\""}
backoff = ">=1.11.1,<3.0"
botocore = {version = ">=1.21,<2", optional = true, markers = "extra == \"all\""}
graphql-core = ">=3.2,<3.3"
requests = {version = ">=2.26,<3", optional = true, markers = "extra == \"all\""}
requests-toolbelt = {version = ">=0.9.1,<1", optional = true, markers = "extra == \"all\""}
urllib3 = {version = ">=1.26", optional = true, markers = "extra == \"all\""}
websockets = {version = ">=10,<11", optional = true, markers = "python_version > \"3.6\" and extra == \"all\""}
yarl = ">=1.6,<2.0"

[package.extras]
aiohttp = ["aiohttp (>=3.7.1,<3.9.0)"]
all = ["aiohttp (>=3.7.1,<3.9.0)", "botocore (>=1.21,<2)", "requests (>=2.26,<3)", "requests-toolbelt (>=0.9.1,<1)", "urllib3 (>=1.26)", "websockets (>=10,<11)", "websockets (>=9,<10)"]
botocore = ["botocore (>=1.21,<2)"]
dev = ["aiofiles", "aiohttp (>=3.7.1,<3.9.0)", "black (==22.3.0)", "botocore (>=1.21,<2)", "check-manifest (>=0.42,<1)", "flake8 (==3.8.1)", "isort (==4.3.21)", "mock (==4.0.2)", "mypy (==0.910)", "parse (==1.15.0)", "pytest (==6.2.5)", "pytest-asyncio (==0.16.0)", "pytest-console-scripts (==1.3.1)", "pytest-cov (==3.0.0)", "requests (>=2.26,<3)", "requests-toolbelt (>=0.9.1,<1)", "sphinx (>=3.0.0,<4)", "sphinx-argparse (==0.2.5)", "sphinx-rtd-theme (>=0.4,<1)", "types-aiofiles", "types-mock", "types-requests", "urllib3 (>=1.26)", "vcrpy (==4.0.2)", "websockets (>=10,<11)", "websockets (>=9,<10)"]
requests = ["requests (>=2.26,<3)", "requests-toolbelt (>=0.9.1,<1)", "urllib3 (>=1.26)"]
test = ["aiofiles", "aiohttp (>=3.7.1,<3.9.0)", "botocore (>=1.21,<2)", "mock (==4.0.2)", "parse (==1.15.0)", "pytest (==6.2.5)", "pytest-asyncio (==0.16.0)", "pytest-console-scripts (==1.3.1)", "pytest-cov (==3.0.0)", "requests (>=2.26,<3)", "requests-toolbelt (>=0.9.1,<1)", "urllib3 (>=1.26)", "vcrpy (==4.0.2)", "websockets (>=10,<11)", "websockets (>=9,<10)"]
test-no-transport = ["aiofiles", "mock (==4.0.2)", "parse (==1.15.0)", "pytest (==6.2.5)", "pytest-asyncio (==0.16.0)", "pytest-console-scripts (==1.3.1)", "pytest-cov (==3.0.0)", "vcrpy (==4.0.2)"]
websockets = ["websockets (>=10,<11)", "websockets (>=9,<10)"]

[[package]]
name = "graphql-core"
version = "3.2.3"
description = "GraphQL implementation for Python, a port of GraphQL.js, the JavaScript reference implementation for GraphQL."
category = "main"
optional = false
python-versions = ">=3.6,<4"

[[package]]
name = "identify"
version = "2.5.6"
description = "File identification library for Python"
category = "dev"
optional = false
python-versions = ">=3.7"

[package.extras]
license = ["ukkonen"]

[[package]]
name = "idna"
version = "3.4"
description = "Internationalized Domain Names in Applications (IDNA)"
category = "main"
optional = false
python-versions = ">=3.5"

[[package]]
name = "imagesize"
version = "1.4.1"
description = "Getting image size from png/jpeg/jpeg2000/gif file"
category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "importlib-metadata"
version = "5.0.0"
description = "Read metadata from Python packages"
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
zipp = ">=0.5"

[package.extras]
docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
perf = ["ipython"]
testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]

[[package]]
name = "iniconfig"
version = "1.1.1"
description = "iniconfig: brain-dead simple config-ini parsing"
category = "dev"
optional = false
python-versions = "*"

[[package]]
name = "isort"
version = "5.10.1"
description = "A Python utility / library to sort Python imports."
category = "dev"
optional = false
python-versions = ">=3.6.1,<4.0"

[package.extras]
colors = ["colorama (>=0.4.3,<0.5.0)"]
pipfile-deprecated-finder = ["pipreqs", "requirementslib"]
plugins = ["setuptools"]
requirements-deprecated-finder = ["pip-api", "pipreqs"]

[[package]]
name = "jinja2"
version = "3.1.2"
description = "A very fast and expressive template engine."
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
MarkupSafe = ">=2.0"

[package.extras]
i18n = ["Babel (>=2.7)"]

[[package]]
name = "jmespath"
version = "1.0.1"
description = "JSON Matching Expressions"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "jsonschema"
version = "4.16.0"
description = "An implementation of JSON Schema validation for Python"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
attrs = ">=17.4.0"
pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"

[package.extras]
format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]

[[package]]
name = "kiwisolver"
version = "1.4.4"
description = "A fast implementation of the Cassowary constraint solver"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "livereload"
version = "2.6.3"
description = "Python LiveReload is an awesome tool for web developers"
category = "dev"
optional = false
python-versions = "*"

[package.dependencies]
six = "*"
tornado = {version = "*", markers = "python_version > \"2.7\""}

[[package]]
name = "loguru"
version = "0.6.0"
description = "Python logging made (stupidly) simple"
category = "main"
optional = false
python-versions = ">=3.5"

[package.dependencies]
colorama = {version = ">=0.3.4", markers = "sys_platform == \"win32\""}
win32-setctime = {version = ">=1.0.0", markers = "sys_platform == \"win32\""}

[package.extras]
dev = ["Sphinx (>=4.1.1)", "black (>=19.10b0)", "colorama (>=0.3.4)", "docutils (==0.16)", "flake8 (>=3.7.7)", "isort (>=5.1.1)", "pytest (>=4.6.2)", "pytest-cov (>=2.7.1)", "sphinx-autobuild (>=0.7.1)", "sphinx-rtd-theme (>=0.4.3)", "tox (>=3.9.0)"]

[[package]]
name = "loguru-mypy"
version = "0.0.4"
description = ""
category = "dev"
optional = false
python-versions = ">=3.6.0"

[package.dependencies]
typing-extensions = "*"

[[package]]
name = "markdown-it-py"
version = "2.1.0"
description = "Python port of markdown-it. Markdown parsing, done right!"
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
mdurl = ">=0.1,<1.0"

[package.extras]
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identify = ">=1.0.0"
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[[package]]
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