diff --git a/.github/empty.txt b/.github/empty.txt
index 33fc4b78..f96f687e 100644
--- a/.github/empty.txt
+++ b/.github/empty.txt
@@ -1,5474 +1,5474 @@
-https://github.com/atchekho/harmpi
-https://github.com/xastprl/DarsakX
-https://github.com/cog-imperial/entmoot
-https://github.com/NERC-CEH/RMAVIS
-https://github.com/fritzsedlazeck/Sniffles
-https://github.com/ywx649999311/vizic
-https://github.com/csabiu/kstat
-https://github.com/quinlanW/dbMisLoc
-https://github.com/kpenev/poet
-https://github.com/jean-pierreBoth/gsearch
-https://github.com/ZjuLiangsl/mmkp
-https://github.com/cosmoinin/MGPT
-https://github.com/tseemann/VelvetOptimiser
-https://github.com/csuhjhjhj/GCNCMI
-https://github.com/FSEC-Photovoltaics/pvrpm-lcoe
-https://github.com/jluastro/PopSyCLE
-https://github.com/OSSOS/SurveySimulator
-https://github.com/r-cas/caracas
-https://github.com/ryokbys/nap
-https://github.com/yukiteruono/pbsim2
-https://github.com/ropensci/virtuoso
-https://github.com/mkenworthy/exorings
-https://github.com/enthought/vpsearch
-https://github.com/greendw/AntabGMVA
-https://github.com/ropensci/hunspell
-https://github.com/jeancmaia/mcglm
-https://github.com/ggonnella/rgfa
-https://github.com/kingyin3613/ringspy
-https://github.com/MaceKuailv/seaduck
-https://github.com/vpc-ccg/calib
-https://github.com/savila/HALOGEN
-https://github.com/jmhuie/Slicer-SegmentGeometry
-https://github.com/matthiasdemuzere/w2w
-https://github.com/johentsch/ms3
-https://github.com/hjens/lasso_spectra
-https://github.com/HCGB-IGTP/spaTyper
-https://github.com/learningsimulator/learningsimulator
-https://github.com/ejsafron/SATCHEL
-https://github.com/IftachSadeh/ANNZ
-https://github.com/bradkav/WIMpy_NREFT
-https://github.com/catherinezucker/radfil
-https://github.com/carpenterphysics/DarkFlux
-https://github.com/hablabx/rfast
-https://github.com/trygvrad/DF-XRM_viz
-https://github.com/pelahi/VELOCIraptor-STF
-https://github.com/labxscut/ksak
-https://github.com/Higgins00/TESS-Localize
-https://github.com/INCF/one_click
-https://github.com/RainthunderWYL/LoRD
-https://github.com/ropensci/citecorp
-https://github.com/tcherninceline/PPInteractions
-https://github.com/aimalz/qp
-https://github.com/MoreiraLAB/or
-https://github.com/EmmanuelSchaan/ThumbStack
-https://github.com/dshawul/NebulaSEM
-https://github.com/symmy596/Polypy
-https://github.com/chapmanb/bcbio.variation
-https://github.com/arq5x/grabix
-https://github.com/aidenlab/juicer
-https://github.com/kritiyer/AngioNet
-https://github.com/JGCRI/plutus
-https://github.com/ropensci/MODIStsp
-https://github.com/fdebras/ECLIPS3D
-https://github.com/jeremiah-corrado/fem_2d
-https://github.com/nuc-astro/WinNet
-https://github.com/ICAMS/strucscan
-https://github.com/sverhoeven/docker-cartodb
-https://github.com/pratheesh3780/grapesAgri1
-https://github.com/YangLab/CIRCexplorer2
-https://github.com/kyleaoman/martini
-https://github.com/gem-pasteur/macsyfinder
-https://github.com/tensorlayer/TensorLayer
-https://github.com/ypmen/PulsarX
-https://github.com/VirtualPlanetaryLaboratory/atmos
-https://github.com/carnotresearch/cr-sparse
-https://github.com/quatrope/feets
-https://github.com/splicebox/PsiCLASS
-https://github.com/simoncasassus/ConeRot
-https://github.com/ropensci/nbaR
-https://github.com/willvousden/ptemcee
-https://github.com/esa/pagmo2-paper
-https://github.com/alan-turing-institute/MLJ.jl
-https://github.com/teoxxx/nemiss_pbl
-https://github.com/brentp/gsort
-https://github.com/seung-lab/FlyWirePaper
-https://github.com/sanger-pathogens/Roary
-https://github.com/mgm8/pyngham
-https://github.com/broadinstitute/picard
-https://github.com/barklem/kaulakys
-https://github.com/mlinderm/npsv
-https://github.com/PaulSt/NGSTrefftz
-https://github.com/FePhyFoFum/phyx
-https://github.com/GalSim-developers/GalSim
-https://github.com/teuben/QAC
-https://github.com/KathrynJones1/catwoman
-https://github.com/napakalas/casbert
-https://github.com/ropensci/randgeo
-https://github.com/openjournals/joss
-https://github.com/m-dadej/MarSwitching.jl
-https://github.com/jfowkes/pycutest
-https://github.com/Electrostatics/apbs
-https://github.com/Cloud-Drift/clouddrift
-https://github.com/nespinoza/ld-exosim
-https://github.com/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark
-https://github.com/medvedevgroup/varmatch
-https://github.com/ImperialCollegeLondon/research-software-directory
-https://github.com/klho/FLAM
-https://github.com/spicy-oil/hfs_fit
-https://github.com/GunzIvan28/rMAP
-https://github.com/kehrlab/PopDel
-https://github.com/ntveem/sterile-dm
-https://github.com/akcochrane/TEfits
-https://github.com/timkartar/RNAscape
-https://github.com/gerthmicha/wolbachia-mlst
-https://github.com/Libensemble/libensemble
-https://github.com/SWIFTSIM/swiftsimio
-https://github.com/justincfeng/PoMiN
-https://github.com/DreamCloud-Project/McSim-Cycle-accurate-NoC
-https://github.com/dieghernan/tidyterra
-https://github.com/brandon-rhodes/python-jplephem
-https://github.com/tolkit/telomeric-identifier
-https://github.com/TommasoRonconi/scampy
-https://github.com/tne-lab/py-behav-box-v2
-https://github.com/AarhusCosmology/prospect_public
-https://github.com/JulienPeloton/s4cmb
-https://github.com/hippke/wotan
-https://github.com/hpparvi/opents
-https://github.com/rpetit3/fastq-dl
-https://github.com/segasai/q3c
-https://github.com/temuller/piscola
-https://github.com/TomKellyGenetics/graphsim
-https://github.com/bcgsc/goldrush
-https://github.com/ropensci/codemetar
-https://github.com/Exo-TiC/ExoTiC-LD
-https://github.com/jeaadams/ExoPix
-https://github.com/BradhamLab/icat
-https://github.com/muzafferarikan/gNOMO2
-https://github.com/JanLeppert/GasChromatographySimulator.jl
-https://github.com/mnets/pymnet
-https://github.com/BioMedIA/MIRTK
-https://github.com/yongsukyee/uncertain_blackholemass
-https://github.com/brian-team/brian2
-https://github.com/lmfit/lmfit-py
-https://github.com/MarioRomeroC/Mixclask
-https://github.com/ropensci/rdflib
-https://github.com/jpober/21cmSense
-https://github.com/TimothyADavis/KinMSpy
-https://github.com/palaeoware/revosim
-https://github.com/spinicist/riesling
-https://github.com/recipy/recipy
-https://github.com/ropensci/sofa
-https://github.com/bcerutti/Zeltron-code
-https://github.com/tyo-nu/MINE-app
-https://github.com/astrorama/SourceXtractorPlusPlus
-https://github.com/RWTH-EBC/FiLiP
-https://github.com/tloredo/CUDAHM
-https://github.com/privong/pyMCSpearman
-https://github.com/labsyspharm/minerva-story
-https://github.com/JoelForamitti/agentpy
-https://github.com/ParaFly/ParaFly
-https://github.com/ahcm/ffindex
-https://github.com/ropensci/AntWeb
-https://github.com/ropensci/nasapower
-https://github.com/danielkoll/tidally-locked-coordinates
-https://github.com/NLeSC/python-template
-https://github.com/jonzink/EDI-Vetter
-https://github.com/kokron/skyLine
-https://github.com/aomlomics/tourmaline
-https://github.com/desihub/fastspecfit
-https://github.com/agsreejith/CONTROL
-https://github.com/Adamtaranto/Yanagiba
-https://github.com/Xomics/ACTIONdemonstrator_workflow
-https://github.com/ropensci/tarchetypes
-https://github.com/CMakePP/CMinx
-https://github.com/HITS-AIN/PINK
-https://github.com/mrc-ide/provisionr
-https://github.com/theia-dev/Qiber3D
-https://github.com/khyox/recentrifuge
-https://github.com/fchuffar/dmethr
-https://github.com/NLeSC/structure-from-motion
-https://github.com/klb2/qmkpy
-https://github.com/ilaudy/PIAO
-https://github.com/tdrobinson/coronagraph_noise
-https://github.com/MiguelEA/nudec_BSM
-https://github.com/eWaterCycle/grpc4bmi
-https://github.com/lgbouma/gyro-interp
-https://github.com/mbursa/sim5
-https://github.com/auckland-cosmo/PyUltraLight
-https://github.com/nlesc-sherlock/Rig
-https://github.com/Illumina/manta
-https://github.com/ByrumLab/proteoDA
-https://github.com/yuliang419/Astronet-Triage
-https://github.com/OpenMD/OpenMD
-https://github.com/iomega/paired-data-form
-https://github.com/ExObsSim/Rapoc-public
-https://github.com/fchuffar/protopackage
-https://github.com/Astro-Sean/autophot
-https://github.com/ropensci/patentsview
-https://github.com/StephenJHardy/SL1M
-https://github.com/stefanradev93/BayesFlow
-https://github.com/cconroy20/fsps
-https://github.com/bmoster/emerge
-https://github.com/LTLA/gesel.js
-https://github.com/jpcoles/mosaic
-https://github.com/ropensci/rgbif
-https://github.com/ethankruse/koi3278
-https://github.com/interactivereport/scRNAsequest
-https://github.com/pmvreeswijk/ZOGY
-https://github.com/tpapp/MCMCDiagnostics.jl
-https://github.com/jkbonfield/io_lib
-https://github.com/NLeSC/fairdatapoint
-https://github.com/occupationMeasurement/occupationMeasurement
-https://github.com/sonwell/biotools
-https://github.com/spacetelescope/astronify
-https://github.com/tseemann/shovill
-https://github.com/FredHutch/SEACR
-https://github.com/jobovy/segueSelect
-https://github.com/bencebeky/spotrod
-https://github.com/Balaje/iceFem
-https://github.com/secimTools/SECIMTools
-https://github.com/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022
-https://github.com/ropensci/excluder
-https://github.com/deepmind/alphafold
-https://github.com/ablab/nerpa
-https://github.com/wdecoster/nanolyse
-https://github.com/jorittmo/singcar
-https://github.com/nasa/prog_models
-https://github.com/vgteam/vg
-https://github.com/smaret/astrochem
-https://github.com/adrientaudiere/MiscMetabar
-https://github.com/biofold/PhD-SNPg
-https://github.com/ropensci/git2r
-https://github.com/PacificBiosciences/minorseq
-https://github.com/ropensci-archive/rodev
-https://github.com/FabioRigamonti/pyADfit
-https://github.com/skiehl/wwz
-https://github.com/marius311/pypico
-https://github.com/Yu606/odyssey
-https://github.com/danielkoll/PyRADS
-https://github.com/bootphon/phonemizer
-https://github.com/realfastvla/realfast
-https://github.com/RWTH-EBC/AixCaliBuHA
-https://github.com/ropensci/lingtypology
-https://github.com/xstarkit/MPI_XSTAR
-https://github.com/cbrnr/sigviewer
-https://github.com/dstndstn/astrometry.net
-https://github.com/NCAS-CMS/cfdm
-https://github.com/isaackd/wcloud
-https://github.com/mtceballos/SIRENAdoc
-https://github.com/GRIT-RBSim/GRIT
-https://github.com/Sudaraka88/LDWeaver
-https://github.com/ropensci/RefManageR
-https://github.com/transientskp/pyse
-https://github.com/JGCRI/ambrosia
-https://github.com/IanHeywood/oxkat
-https://github.com/sanjibs/bmcmc
-https://github.com/YeoLab/FLARE
-https://github.com/wdecoster/nanoQC
-https://github.com/ropensci/outsider.devtools
-https://github.com/nickrodd/HDMSpectra
-https://github.com/martenlourens/SHARC
-https://github.com/emerge-erc/ALminer
-https://github.com/simpeg/aurora
-https://github.com/dkirkby/gphist
-https://github.com/annehutter/grid-model
-https://github.com/tvwenger/kinematic_scaleheight
-https://github.com/DTsuna/CHIPS
-https://github.com/ebellm/pyraf-dbsp
-https://github.com/upb-lea/ElectricGrid.jl
-https://github.com/phylo42/RAPPAS
-https://github.com/Junwu302/HiFun
-https://github.com/3top1a/biotools-linter
-https://github.com/SNOwGLoBES/snowglobes
-https://github.com/dianna-ai/dianna
-https://github.com/chhylp123/hifiasm
-https://github.com/dokkum/maskfill
-https://github.com/ropensci/RSelenium
-https://github.com/wilsonrljr/sysidentpy
-https://github.com/freesurfer/freesurfer
-https://github.com/NREL/graph-env
-https://github.com/MoreiraLAB/mensadb-open
-https://github.com/natir/vcf2parquet
-https://github.com/shilpagarg/WHdenovo
-https://github.com/UFParLab/aces4
-https://github.com/mbaes/SpheCow
-https://github.com/ANTsX/ANTs
-https://github.com/jvc2688/K2-CPM
-https://github.com/ropensci/chlorpromazineR
-https://github.com/henrikdvn/CRSocket
-https://github.com/Imperial-visualizations/Physics-Visualizations
-https://github.com/lucabaldini/ixpeobssim
-https://github.com/Magritte-code/Magritte
-https://github.com/GooglingTheCancerGenome/sv-callers
-https://github.com/Beryl-Jingxin/PyExoCross
-https://github.com/umbramortem/nProFit
-https://github.com/amueller/word_cloud
-https://github.com/qianlivan/RPPPS
-https://github.com/yangyanli/DO-Conv
-https://github.com/basp-group/Optical-Interferometry-Trilinear
-https://github.com/wdecoster/nanocomp
-https://github.com/cloudflex-project/cloudflex
-https://github.com/bpp/bpp
-https://github.com/aconley/mbb_emcee
-https://github.com/coder/code-server
-https://github.com/zengzhenhuan/GFNet
-https://github.com/sahasuparna/DeMoS
-https://github.com/somefunAgba/NLSIG-COVID19Lab
-https://github.com/arviz-devs/arviz
-https://github.com/IMS-MAXIMS/openMAXIMS
-https://github.com/tldr-group/taufactor
-https://github.com/t-brandt/acorns-adi
-https://github.com/phac-nml/staramr
-https://github.com/aothmane-control/Algebraic-differentiators
-https://github.com/aliojjati/MGCAMB
-https://github.com/LucaMalavolta/CCFpams
-https://github.com/dvallesp/vortex-p
-https://github.com/PeterKamphuis/pyFAT-astro
-https://github.com/mavrix93/LightCurvesClassifier
-https://github.com/thejasvibr/bat_beamshapes
-https://github.com/PyLops/pyproximal
-https://github.com/FRBs/FRB
-https://github.com/wbalmer/backtracks
-https://github.com/ericagol/TTVFaster
-https://github.com/whybsml/whybsml
-https://github.com/CliMA/EnsembleKalmanProcesses.jl
-https://github.com/PhilippJunk/homelette
-https://github.com/krab1k/ChargeFW2
-https://github.com/ManuelBehrendt/Mera.jl
-https://github.com/RAMP-project/RAMP
-https://github.com/KeplerGO/K2fov
-https://github.com/brettc/partitionfinder
-https://github.com/agshumate/LiftoffTools
-https://github.com/soedinglab/MMseqs2
-https://github.com/virgesmith/neworder
-https://github.com/LoganAMorrison/Hazma
-https://github.com/poldracklab/nitransforms
-https://github.com/bokulich-lab/q2-fondue
-https://github.com/cusbg/MolArt
-https://github.com/storyofthewolf/ExoCAM
-https://github.com/mcsiple/mmrefpoints
-https://github.com/Dulab2020/ARMT
-https://github.com/magnuspalmblad/averageRegions
-https://github.com/CrowdTruth/CrowdTruth
-https://github.com/WGLab/LongReadSum
-https://github.com/EdanRein/pyPplusS
-https://github.com/HoBeZwe/SphericalScattering.jl
-https://github.com/eEcoLiDAR/laserchicken
-https://github.com/compomics/xilmass
-https://github.com/NeuralEnsemble/elephant
-https://github.com/lu-yizhou/ClusterSeg
-https://github.com/davidkipping/ECCSAMPLES
-https://github.com/CheerfulUser/TESSreduce
-https://github.com/hotokezaka/HeatingRate
-https://github.com/hippke/Pandora
-https://github.com/idptools/metapredict
-https://github.com/parallelwindfarms/byteparsing
-https://github.com/paulmorio/gincco
-https://github.com/ropensci/rorcid
-https://github.com/eWaterCycle/ewatercycle
-https://github.com/halomod/halomod
-https://github.com/HeracleBT/vEMstitch
-https://github.com/mslonina/Mechanic
-https://github.com/sbird/GenPK
-https://github.com/AndreinaCastillo/Genie_manuscript_data_analysis
-https://github.com/cvjena/JeFaPaTo
-https://github.com/LiesaSalzer/MobilityTransformR
-https://github.com/teuben/nemo
-https://github.com/ebachelet/pyLIMA
-https://github.com/exoclime/FastChem
-https://github.com/thomgrand/fim-python
-https://github.com/CosmoStatGW/gwfast
-https://github.com/oleksulkowski/Syn-CpG-Spacer
-https://github.com/spedas/pyspedas
-https://github.com/Mik3M4n/EF-TIGRE
-https://github.com/sncosmo/sncosmo
-https://github.com/igmhub/LyaCoLoRe
-https://github.com/hallamlab/TreeSAPP
-https://github.com/guilledufort/EnanoFASTQ
-https://github.com/FAU-LAP/NOMAD-CAMELS
-https://github.com/JGCRI/stitches
-https://github.com/younglab/origami
-https://github.com/fruzsinaagocs/oscode
-https://github.com/pmelsted/pizzly
-https://github.com/CBIIT-CGBB/gcMECM
-https://github.com/pavolgaj/OCFit
-https://github.com/seqan/lambda
-https://github.com/matthiasfabry/spinOS
-https://github.com/nick-youngblut/gtdb_to_taxdump
-https://github.com/adigenova/wengan
-https://github.com/mildpiggy/DEP2
-https://github.com/ropensci/baRcodeR
-https://github.com/ropensci/roadoi
-https://github.com/mariapetro/LeHaMoC
-https://github.com/JuliaArrays/InfiniteArrays.jl
-https://github.com/sidiwang/snSMART
-https://github.com/lanl/GLUE
-https://github.com/jobovy/apogee
-https://github.com/vsquicciarini/madys
-https://github.com/MicGrasso/bigonlight
-https://github.com/ropensci/cRegulome
-https://github.com/jdidion/atropos
-https://github.com/DeepRank/PSSMGen
-https://github.com/pierrebarbera/epa-ng
-https://github.com/ArgoCanada/argodata
-https://github.com/alexander-pastukhov/bistablehistory
-https://github.com/VasuLab/rgfrosh
-https://github.com/HAWinther/MG-PICOLA-PUBLIC
-https://github.com/dmvandamt/beyonce
-https://github.com/NLeSC/eSalsa-MPI
-https://github.com/tekpinar/correlationplus
-https://github.com/astro-informatics/ssht
-https://github.com/siara-cc/Unishox2
-https://github.com/morisUtokyo/uTR
-https://github.com/Jingxuan97/nemesispy
-https://github.com/ptiede/Comrade.jl
-https://github.com/yatiml/yatiml
-https://github.com/918particle/AskaryanModule
-https://github.com/raddleverse/MimiBRICK.jl
-https://github.com/gijut/gnucash
-https://github.com/eelregit/mcfit
-https://github.com/mattyowl/fitScalingRelation
-https://github.com/dh4gan/tache
-https://github.com/BenMql/coral
-https://github.com/zd1/telseq
-https://github.com/ropensci/epubr
-https://github.com/mkplummer/Imber
-https://github.com/pyxnat/pyxnat
-https://github.com/emossoux/LIFELINE
-https://github.com/amkram/shusher
-https://github.com/linnarsson-lab/loompy
-https://github.com/SCECcode/pycsep
-https://github.com/hishamhm/htop
-https://github.com/UAMCAntwerpen/LEADD
-https://github.com/lh3/miniasm
-https://github.com/KonradHoeffner/hdt
-https://github.com/biolab-unige/nifti2dicom
-https://github.com/metagenlab/MeSS
-https://github.com/pierrehoudayer/RUBIS
-https://github.com/alastair-droop/fqtools
-https://github.com/ropensci/stantargets
-https://github.com/ImperialCollegeLondon/safedata
-https://github.com/astrostat/Automark
-https://github.com/PDB-REDO/cif-tools
-https://github.com/junkoda/sidm-nbody
-https://github.com/farhanferoz/MultiNest
-https://github.com/Astro-Sean/escatter
-https://github.com/kutaslab/fitgrid
-https://github.com/BenNordick/HiLoop
-https://github.com/tomasplsek/CADET
-https://github.com/matthewholman/assist
-https://github.com/quatrope/ProperImage
-https://github.com/dynamics-of-stellar-systems/dynamite_release
-https://github.com/storyofthewolf/ExoRT
-https://github.com/lsds/sgx-lkl
-https://github.com/PyTables/PyTables
-https://github.com/AA-ALERT/frbcat-web
-https://github.com/teamPSG/kNN_Sleep_Scorer_kNNSS
-https://github.com/casaluca/bolometric-corrections
-https://github.com/reneheller/pile-up
-https://github.com/YonghuiDong/RawHummus
-https://github.com/sylabs/singularity
-https://github.com/pcubillos/pyratbay
-https://github.com/3D-e-Chem/knime-pharmacophore
-https://github.com/haowang-astro/jetsimpy
-https://github.com/a-slide/pycoQC
-https://github.com/lijing28101/maize_pyrpipe
-https://github.com/aiproteomics/aiproteomics
-https://github.com/ACEnglish/truvari
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-https://github.com/andreyshabalin/TwinEQTL
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-https://github.com/fkiwy/Finder_charts
-https://github.com/SchmollerLab/Cell_ACDC
-https://github.com/jts/sga
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-https://github.com/sapearson/HSS
-https://github.com/astro-informatics/s2let
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-https://github.com/neuroneural/brainchop
-https://github.com/NLeSC/embodied-emotions-scripts
-https://github.com/vinisalazar/metaphor
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-https://github.com/AnthonyOfSeattle/pyAscoreValidation
-https://github.com/pec27/hfof
-https://github.com/hombit/freddi
-https://github.com/thetisproject/thetis
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-https://github.com/igmhub/baofit
-https://github.com/parsotat/BatAnalysis
-https://github.com/ccsb-scripps/Illustrate
-https://github.com/PDB-REDO/dssp
-https://github.com/VegeWaterDynamics/motrainer
-https://github.com/mlegr/EqualISER
-https://github.com/asgr/Rfits
-https://github.com/iomega/zenodo-upload
-https://github.com/ckarako/RRATtrap
-https://github.com/nombac/optab
-https://github.com/astrogilda/mirkwood
-https://github.com/McPHAC/McPHAC
-https://github.com/smsharma/dark-photons-perturbations
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-https://github.com/AndreNicolasChene/DRAGRACES
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-https://github.com/tacazares/SeedMatchR
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-https://github.com/PMBio/peer
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-https://github.com/zpenoyre/OoT
-https://github.com/tomlouden/SPIDERMAN
-https://github.com/htjb/margarine
-https://github.com/andizq/sf3dmodels
-https://github.com/eucp-project/atlas
-https://github.com/COMBINE-lab/libgff
-https://github.com/MannLabs/alphapept
-https://github.com/N-BodyShop/fof
-https://github.com/mehdirezaie/SYSNet
-https://github.com/Kambrian/SubGen
-https://github.com/amanchokshi/EMBERS
-https://github.com/Gaius-Augustus/BRAKER
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-https://github.com/JGCRI/tethys
-https://github.com/lucianolorenti/ceruleo
-https://github.com/ArneTillmann/AuDoLab
-https://github.com/surf-eds/one-button-compute
-https://github.com/mihanke/athos
-https://github.com/cwru-pat/cosmograph
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-https://github.com/bio-ontology-research-group/deepgoplus
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-https://github.com/epic-astronomy/EPIC
-https://github.com/KVSlab/turtleFSI
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-https://github.com/astromb/PICsar2D
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-https://github.com/DrafProject/elmada
-https://github.com/DreamCloud-Project/AMALTHEA-Microworkload-Generator
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-https://github.com/sundarjhu/2-DUST
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-https://github.com/ELELAB/LipidDyn
-https://github.com/redcap-tools/PyCap
-https://github.com/nicolet5/DiffCapAnalyzer
-https://github.com/kdm9/libqcpp
-https://github.com/Astroua/TurbuStat
-https://github.com/RTIP/artip
-https://github.com/benmontet/f3
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-https://github.com/MikeHeiber/Excimontec
-https://github.com/spectrapepper/spectrapepper
-https://github.com/bcgsc/ntCard
-https://github.com/mcfrith/dnarrange
-https://github.com/casacore/casacore
-https://github.com/spglib/spgrep
-https://github.com/mkunimoto/LEO-vetter
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-https://github.com/NSAPH-Software/CRE
-https://github.com/Trovemaster/TROVE
-https://github.com/umbralcalc/nfield
-https://github.com/cbrueffer/tophat-recondition
-https://github.com/moeyensj/atm
-https://github.com/ICRAR/ProFit
-https://github.com/rychallener/theresa
-https://github.com/avigan/pyZELDA
-https://github.com/DeepRegNet/DeepReg
-https://github.com/Oftatkofta/cellocity
-https://github.com/vwesselkamp/ernie-extension
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-https://github.com/huchiayu/ParticleGridMapper.jl
-https://github.com/alicia-ziying-yang/conTEXT-explorer
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-https://github.com/RabadanLab/arcasHLA
-https://github.com/PrincetonUniversity/Athena-Cversion
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-https://github.com/kernsuite-debian/parseltongue
-https://github.com/sbailey/empca
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-https://github.com/ropensci/exoplanets
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-https://github.com/vincentvaneylen/k2photometry
-https://github.com/jboynyc/textnets
-https://github.com/m-d-grunnill/MetaCast
-https://github.com/CSUBioGroup/GraphLncLoc
-https://github.com/oschwengers/referenceseeker
-https://github.com/SAMI-Galaxy-Survey/sami
-https://github.com/UNSW-CEEM/nempy
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-https://github.com/Weeks-UNC/RingMapper
-https://github.com/ekg/fastahack
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-https://github.com/miniufo/xinvert
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-https://github.com/vimc/vaultr
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-https://github.com/r-lib/gert
-https://github.com/bcgsc/LongStitch
-https://github.com/rrwick/Porechop
-https://github.com/cancerit/alleleCount
-https://github.com/jranalli/solarspatialtools
-https://github.com/DorianDepriester/MTEX2Gmsh
-https://github.com/tzhu-bio/UMI-ATAC-seq
-https://github.com/Keck-DataReductionPipelines/MosfireDRP
-https://github.com/NicOudart/PyBWE
-https://github.com/MD-Studio/MDStudio
-https://github.com/paulhjkelly/taskgraph-metaprogramming
-https://github.com/pmelchior/shapelens
-https://github.com/parkus/fiducial_flare
-https://github.com/synchrofit/synchrofit
-https://github.com/IFB-ElixirFr/edam-browser
-https://github.com/NNSSA/GALLUMI_public
-https://github.com/BioGearsEngine/core
-https://github.com/AstroVPK/kali
-https://github.com/TheMillerLab/genetex
-https://github.com/snad-space/zwad
-https://github.com/richteague/eddy
-https://github.com/dmey/synthia
-https://github.com/GooglingTheCancerGenome/sv-channels
-https://github.com/nsoranzo/sspace_basic
-https://github.com/saezlab/PHONEMeS
-https://github.com/starkit/wsynphot
-https://github.com/lyf222/alpconv
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-https://github.com/Kaixhin/Autoencoders
-https://github.com/davidgardenier/frbcat
-https://github.com/jakeown/astroclover
-https://github.com/erf-model/ERF
-https://github.com/hamers/secularmultiple
-https://github.com/jrenaud90/TidalPy
-https://github.com/biolab/orange3-network
-https://github.com/zpliulab/GeoBind
-https://github.com/cheng-zhao/FCFC
-https://github.com/MaayanLab/signature-commons-ui
-https://github.com/FraunhoferIWES/foxes
-https://github.com/ropensci/nomisr
-https://github.com/jacobmerson/model-traits
-https://github.com/dkoslicki/TAMPA
-https://github.com/winni2k/abeona
-https://github.com/COINtoolbox/DRACULA
-https://github.com/ZacharyJia/opsdn
-https://github.com/ToyotaCRDL/mahos
-https://github.com/Guo-Jian-Wang/colfi
-https://github.com/rvalieris/parallel-fastq-dump
-https://github.com/NLeSC/eEcology-script-wrapper
-https://github.com/hveerten/katu
-https://github.com/biolab/orange-bio
-https://github.com/JaimeRZP/LimberJack.jl
-https://github.com/RECETOX/RIAssigner
-https://github.com/SeamusClarke/BTS
-https://github.com/ropensci/rnoaa
-https://github.com/LukeDuttweiler/skipTrack
-https://github.com/chanzuckerberg/czid-dag
-https://github.com/macrocosme/amber_meta
-https://github.com/gear-genomics/dicey
-https://github.com/webbjj/m2mcluster
-https://github.com/LSSTDESC/WeakLensingDeblending
-https://github.com/CEA-MetroCarac/pystack3d
-https://github.com/broadinstitute/Drop-seq
-https://github.com/ntcockroft/STarFish
-https://github.com/ropensci/skimr
-https://github.com/aranyics/ReDCM
-https://github.com/EnsembleGovServices/kamodo-core
-https://github.com/benstahl92/deepSIP
-https://github.com/athulpg007/AMAT
-https://github.com/jharno/cubep3m
-https://github.com/astro-informatics/comb
-https://github.com/metabolomicsworkbench/MetGENE
-https://github.com/ropensci/getlandsat
-https://github.com/bwkeller/PASTA
-https://github.com/tripathi/Atmospheric-Athena
-https://github.com/dnafinder/uroccomp
-https://github.com/mourisl/Lighter
-https://github.com/mlaparie/sigh
-https://github.com/OceanGenomics/mudskipper
-https://github.com/bacpop/ska.rust
-https://github.com/NMBU-Data-Science/RENT
-https://github.com/changliao1025/pyflowline
-https://github.com/epfl-radio-astro/LiSA
-https://github.com/bayesn/bayesn
-https://github.com/dh4gan/grapus
-https://github.com/jgagneastro/CoMover
-https://github.com/HinLeung622/pipes_vis
-https://github.com/maxmahlke/ssos
-https://github.com/cov-lineages/pangoLEARN
-https://github.com/GATB/MindTheGap
-https://github.com/nluetts/NoisySignalIntegration.jl
-https://github.com/pcubillos/mc3
-https://github.com/askap-craco/CELEBI
-https://github.com/OxES/k2sc
-https://github.com/SKA-INAF/caesar-rest
-https://github.com/HCGB-IGTP/XICRA
-https://github.com/minaskar/zeus
-https://github.com/icecube/FIRESONG
-https://github.com/MREYE-LUMC/ZOSPy
-https://github.com/biobakery/phylophlan
-https://github.com/TearsWaiting/MIMML
-https://github.com/bluenote-1577/sylph
-https://github.com/mikessh/oncofuse
-https://github.com/NuGrid/NuPyCEE
-https://github.com/eWaterCycle/era5cli
-https://github.com/benjaminbolling/DynaGUI
-https://github.com/thom991/MSIQuickView
-https://github.com/saeyslab/CytoNorm_Figures
-https://github.com/carpyncho/carpyncho-py
-https://github.com/UCD4IDS/WaveletsExt.jl
-https://github.com/AliYoussef96/parazitCUB
-https://github.com/ropensci/taxizedb
-https://github.com/EpistasisLab/tpot
-https://github.com/astropy/ccdproc
-https://github.com/SJTU-CGM/ivTerm
-https://github.com/osallou/cassiopee-c
-https://github.com/mischaschirmer/nebular
-https://github.com/li-shaochuan/SEDIM
-https://github.com/ylxu05/HN-PPISP
-https://github.com/RichardObi/medigan
-https://github.com/ropensci/emld
-https://github.com/biomedia-mira/masf
-https://github.com/galaxyproject/galaxy-lib
-https://github.com/LabTranslationalArchitectomics/riboWaltz
-https://github.com/ToHanwei/Genome2OR
-https://github.com/ICRAR/shark
-https://github.com/eliotayache/GAMMA
-https://github.com/PaulKuin/uvotpy
-https://github.com/AdriJD/beamconv
-https://github.com/FINNGEN/lavaa-react
-https://github.com/LLNL/echemfem
-https://github.com/Starlink/ORAC-DR
-https://github.com/mgalardini/pyseer
-https://github.com/rega-cev/virulign
-https://github.com/jfmrod/MAPseq
-https://github.com/pjcigan/pysymlog
-https://github.com/cjbarrie/academictwitteR
-https://github.com/Aminsinichi/wearable-hrv
-https://github.com/AMReX-Combustion/PeleLMeX
-https://github.com/vimc/dettl
-https://github.com/wdecoster/nanomath
-https://github.com/SeamusClarke/RJplots
-https://github.com/spacetelescope/stginga
-https://github.com/nipy/heudiconv
-https://github.com/sybila/biodivine-aeon-py
-https://github.com/CosmoStat/Glimpse
-https://github.com/JGCRI/gcamfaostat
-https://github.com/ropensci/historydata
-https://github.com/msolpera/pyUPMASK
-https://github.com/DrDaveShaw/INCHEM-Py
-https://github.com/mengaldo/PySPOD
-https://github.com/LucIJspeert/eclipsr
-https://github.com/rhenkin/visxhclust
-https://github.com/KVSlab/VaMPy
-https://github.com/jorisparet/partycls
-https://github.com/astroCV/astroCV
-https://github.com/elwinter/nnde
-https://github.com/SSDataLab/vetting
-https://github.com/NLeSC/OCTSegmentation
-https://github.com/ZhaoXM-Lab/metaMIC
-https://github.com/SophieMLV/axionHMcode
-https://github.com/baker-laboratory/RoseTTAFold-All-Atom
-https://github.com/esandford/EightBitTransit
-https://github.com/ImperialCollegeLondon/WInc3D
-https://github.com/mneeleman/qubefit
-https://github.com/MorgansLab/OSCILOS_long
-https://github.com/fjankowsk/scatfit
-https://github.com/ariedel/lacewing
-https://github.com/GregoryFaust/yaha
-https://github.com/XGI-MSU/WDMWaveletTransforms
-https://github.com/drupke/ifsfit
-https://github.com/fritzsedlazeck/SURVIVOR
-https://github.com/yangyongsan-bio/GREAP
-https://github.com/phenomecentre/nPYc-Toolbox
-https://github.com/tresoldi/ngesh
-https://github.com/dellytools/sansa
-https://github.com/ropensci/unrtf
-https://github.com/ropensci/spocc
-https://github.com/timstaley/chimenea
-https://github.com/r3w0p/bobocep
-https://github.com/ComputationalRegulatoryGenomicsICL/TFBS
-https://github.com/guynir42/radon
-https://github.com/USU-Analytics-Solution-Center/Bruno.jl
-https://github.com/freelawproject/eyecite
-https://github.com/algo-cancer/CAMMiQ
-https://github.com/MRCIEU/PHESANT
-https://github.com/cas-bioinf/rboAnalyzer
-https://github.com/giuspugl/picasso
-https://github.com/ropensci/mcbette
-https://github.com/wasserman-group/pyCADMium
-https://github.com/mtsch/Ripserer.jl
-https://github.com/liulei/volks2
-https://github.com/mfem/mfem
-https://github.com/tkonolige/city2ba
-https://github.com/InfOmics/PanDelos-frags
-https://github.com/cweniger/swordfish
-https://github.com/dzerbino/velvet
-https://github.com/tpospisi/RFCDE
-https://github.com/mlarichardson/CosmosCanvas
-https://github.com/CRG-CNAG/anubis
-https://github.com/ziyewang/MetaBinner
-https://github.com/djbard/ccogs
-https://github.com/wen-jams/bsavi
-https://github.com/sevenstarknight/SSMM
-https://github.com/relipmoc/skewer
-https://github.com/NIFTI-Imaging/nifti_clib
-https://github.com/nialov/fractopo
-https://github.com/hypre-space/hypredrive
-https://github.com/PacificBiosciences/pbbioconda
-https://github.com/exosports/HOMER
-https://github.com/BarquistLab/mason_paper
-https://github.com/mwoodbri/MRIdb
-https://github.com/nickhand/pyRSD
-https://github.com/cbg-ethz/smallgenomeutilities
-https://github.com/hildebra/sdm
-https://github.com/tud-hri/travia
-https://github.com/LiShuTJ/NDNet
-https://github.com/spacetelescope/jdaviz
-https://github.com/miriamkw/GluPredKit
-https://github.com/sandialabs/pvOps
-https://github.com/zclaytor/butterpy
-https://github.com/arhstevens/DarkSage
-https://github.com/jimmink/argslab
-https://github.com/xdqso/xdqso
-https://github.com/minaskar/pocomc
-https://github.com/CliMA/CalibrateEmulateSample.jl
-https://github.com/gnave/pybranch
-https://github.com/fhtouma/subgen2
-https://github.com/biofold/ddgun
-https://github.com/adammoss/supernovae
-https://github.com/pwry/lextes
-https://github.com/nlesc-nano/insilico-server
-https://github.com/GenomiqueENS/toulligQC
-https://github.com/ropensci/biomartr
-https://github.com/v-morello/riptide
-https://github.com/soraxas/sbp-env
-https://github.com/esa/NIDN
-https://github.com/myrafproject/myrafproject
-https://github.com/PacificBiosciences/kineticsTools
-https://github.com/tariks/peakachu
-https://github.com/Martindelosrios/MeSsI
-https://github.com/sap218/jabberwocky
-https://github.com/shirtsgroup/physical_validation
-https://github.com/kushaltirumala/WaldoInSky
-https://github.com/ropensci/rotl
-https://github.com/ihmwg/python-modelcif
-https://github.com/toros-astro/corral
-https://github.com/nliulab/HRnV-Calc
-https://github.com/nanoporetech/ont_fast5_api
-https://github.com/jordanflitter/21cmFirstCLASS
-https://github.com/AndreaCaldiroli/ATES-Code
-https://github.com/flexible-atomic-code/fac
-https://github.com/harrispopgen/mutyper
-https://github.com/n-claes/legolas
-https://github.com/pcubillos/rate
-https://github.com/mpi4py/shmem4py
-https://github.com/callendeprieto/ferre
-https://github.com/rathnakumars/difference-smoothing
-https://github.com/nitadori/SCF-FDPS
-https://github.com/MJTemple/qsogen
-https://github.com/johnschwenck/bp
-https://github.com/bwa-mem2/bwa-mem2
-https://github.com/mjshao06/pdifFinder
-https://github.com/tikk3r/lofar-h5plot
-https://github.com/glenco/lensed
-https://github.com/rmaphoh/AutoMorph
-https://github.com/jakeret/abcpmc
-https://github.com/BasilioRuiz/SIR-code
-https://github.com/ethicsai/ethical-smart-grid
-https://github.com/COMBINE-lab/cuttlefish
-https://github.com/nanoporetech/tombo
-https://github.com/aconley/simple_cosfitter
-https://github.com/PabloVD/CosmoGraphNet
-https://github.com/javicarron/pynkowski
-https://github.com/RadioAstronomySoftwareGroup/pyuvdata
-https://github.com/SeaIce-Math/SubZero
-https://github.com/NLeSC/PattyData
-https://github.com/tkerscher/blast
-https://github.com/vbakis/mrs
-https://github.com/ropensci/rppo
-https://github.com/cpinte/mcfost
-https://github.com/EvolBioInf/andi
-https://github.com/metagenlab/assembly_finder
-https://github.com/mlafarga/raccoon
-https://github.com/cosmicrays/DRAGON
-https://github.com/ernewton/tellrv
-https://github.com/neeravkaushal/RIDs-in-WCDs
-https://github.com/sauddy/GRINN
-https://github.com/cameron314/concurrentqueue
-https://github.com/cajohare/NeutrinoFog
-https://github.com/YesselmanLab/rna_map
-https://github.com/AnkitBarik/planetMagFields
-https://github.com/OpenWaterAnalytics/pyswmm
-https://github.com/CDSP-SCPO/metadata-middleware
-https://github.com/UM-Bridge/umbridge
-https://github.com/ggonnella/fastsubtrees
-https://github.com/TPI-Immunogenetics/igmat
-https://github.com/FengTaoSMU/MOBFinder
-https://github.com/light-curve/light-curve-python
-https://github.com/bradkav/CEvNS
-https://github.com/stedolan/jq
-https://github.com/ArtRand/signalAlign
-https://github.com/CatarinaMMarques/FisherCosmology
-https://github.com/bbercovici/SBGAT
-https://github.com/ska-sa/katdal
-https://github.com/aroffringa/aartfaac2ms
-https://github.com/dglaeser/gridformat
-https://github.com/nkhorshid/SimAb
-https://github.com/steven-murray/pydftools
-https://github.com/katholt/Kleborate
-https://github.com/NeoGeographyToolkit/StereoPipeline
-https://github.com/forrest-lab/scMatch
-https://github.com/qtltools/qtltools
-https://github.com/Zafiirah13/meercrab
-https://github.com/temken/DarkARC
-https://github.com/nextgenusfs/amptk
-https://github.com/PolymerGuy/recolo
-https://github.com/ropensci/refimpact
-https://github.com/JuliaArrays/BlockArrays.jl
-https://github.com/edwardoughton/itmlogic
-https://github.com/abinit/abinit
-https://github.com/tikk3r/legacystamps
-https://github.com/rajeshmondal18/DviSukta
-https://github.com/temken/DaMaSCUS-SUN
-https://github.com/myfang2021/VIPPID
-https://github.com/IKNL/vantage6
-https://github.com/SWE-UniStuttgart/Qlunc
-https://github.com/floodlight-sports/floodlight
-https://github.com/manodeep/TesseRACt
-https://github.com/YinanZhao21/SOAP_GPU
-https://github.com/WMD-group/hybrid-perovskites
-https://github.com/DEIB-GECO/CRIS_single-sample
-https://github.com/ratt-ru/CubiCal
-https://github.com/sing-group/seda
-https://github.com/coleygroup/pyscreener
-https://github.com/QEF/q-e
-https://github.com/hyattpd/Prodigal
-https://github.com/VChristiaens/MINDS
-https://github.com/ropensci/dataaimsr
-https://github.com/isoverse/isoreader
-https://github.com/AA-ALERT/Dedispersion
-https://github.com/XuhanLiu/DrugEx
-https://github.com/exosports/transit
-https://github.com/tmcclintock/cluster_toolkit
-https://github.com/tibordome/cosmic_profiles
-https://github.com/brsynth/rp2paths
-https://github.com/rdpstaff/TaxonomyTree
-https://github.com/pkestene/ramsesGPU
-https://github.com/mrirecon/bart
-https://github.com/AMReX-Astro/MAESTRO
-https://github.com/Sarc-Graph/sarcgraph
-https://github.com/fforster/DELIGHT
-https://github.com/biod/sambamba
-https://github.com/jteutenberg/downpore
-https://github.com/theLongLab/CATE
-https://github.com/samwaseda/mamonca
-https://github.com/icbm-iupui/STAFF
-https://github.com/datngu/Circall
-https://github.com/vocalpy/crowsetta
-https://github.com/tahirulqamar/Deep-HPI-pred
-https://github.com/xfengnefx/hifiasm-meta
-https://github.com/RealTimeGenomics/rtg-tools
-https://github.com/biocore/unifrac
-https://github.com/sisl/POMDPStressTesting.jl
-https://github.com/blind-contours/SuperNOVA
-https://github.com/ropensci/bibtex
-https://github.com/josegit88/SCORPIO
-https://github.com/bioturing/hera
-https://github.com/veragluscevic/dmdd
-https://github.com/telegraphic/fits2hdf
-https://github.com/zachetienne/nrpytutorial
-https://github.com/lucaborsato/trades
-https://github.com/FCS-analysis/multipletau
-https://github.com/jamesrhester/Lerche.jl
-https://github.com/CyclotronResearchCentre/bidsme
-https://github.com/DOnghiaGroup/MGwave
-https://github.com/tgrimes/SeqNet
-https://github.com/ropensci/rnaturalearthdata
-https://github.com/trevisanj/PFANT
-https://github.com/ropensci/tradestatistics
-https://github.com/gromacs/gromacs
-https://github.com/genouest/biomaj-daemon
-https://github.com/dokester/BayesicFitting
-https://github.com/MolecularAI/DockStreamCommunity
-https://github.com/lgrcia/prose
-https://github.com/samb8s/PsrPopPy
-https://github.com/spacetelescope/pystortion
-https://github.com/ropensci/ruODK
-https://github.com/abrupt-climate/hyper-canny
-https://github.com/anddssan/CLOUDe
-https://github.com/Mik3M4n/BaCoN
-https://github.com/cl3425/Clairvoyance
-https://github.com/a-griffiths/AutoSpec
-https://github.com/PengyiZhang/DRR4Covid
-https://github.com/upb-lea/openmodelica-microgrid-gym
-https://github.com/parkus/scicatalog
-https://github.com/NLeSC/Chemical-Analytics-Platform
-https://github.com/morphometry/papaya2
-https://github.com/asgr/ProSpect
-https://github.com/markusbonse/applefy
-https://github.com/drcandacemakedamoore/cleanX
-https://github.com/mrc-ide/covid-sim
-https://github.com/solislemuslab/minaa
-https://github.com/ImperialCollegeLondon/pytest_template_application
-https://github.com/ropensci/qualtRics
-https://github.com/exoclime/VULCAN
-https://github.com/ec-jrc/nrt
-https://github.com/jiahecui/SenAOReFoc
-https://github.com/HorvathLab/ReQTL
-https://github.com/bjmt/universalmotif
-https://github.com/ropensci/tiler
-https://github.com/shihyuntang/igrins_rv
-https://github.com/nand1155/CausNet
-https://github.com/mtazzari/galario
-https://github.com/tvwenger/WISP
-https://github.com/percolator/percolator
-https://github.com/statgen/Minimac4
-https://github.com/Jammy2211/PyAutoGalaxy
-https://github.com/Anirbancosmo/Limpy
-https://github.com/trichter/yam
-https://github.com/tmrcpsu/bacseq
-https://github.com/AlexanderJuestel/pyheatdemand
-https://github.com/NRDD-constraints/NRDD
-https://github.com/MichaelCretignier/Rassine_public
-https://github.com/Heldenkombinat/Logodetect
-https://github.com/voutcn/megahit
-https://github.com/potree/PotreeConverter
-https://github.com/kbarbary/sep
-https://github.com/nkallima/sim-universal-construction
-https://github.com/pmelchior/spender
-https://github.com/SPARTA-dev/SPARTA
-https://github.com/sherpa-deproject/deproject
-https://github.com/e-mental-health/data-processing
-https://github.com/mmp2/megaman
-https://github.com/daler/pybedtools
-https://github.com/biobakery/halla
-https://github.com/MichelleLochner/astronomaly
-https://github.com/difuture-lmu/dsBinVal
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-https://github.com/ropensci/ramlegacy
-https://github.com/galtay/sphray
-https://github.com/NERDSITU/superblockify
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-https://github.com/Glogobyte/miRGalaxy
-https://github.com/Michalychforever/CLASS-PT
-https://github.com/daddeptr/Needlets
-https://github.com/AgrDataSci/climatrends
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-https://github.com/jrkerns/pylinac
-https://github.com/mzkhalid039/DWBuilder
-https://github.com/ahwkuepper/mcluster
-https://github.com/prioritizr/wdpar
-https://github.com/mishioo/tesliper
-https://github.com/3D-e-Chem/knime-silicos-it
-https://github.com/cumbof/honto
-https://github.com/tlverse/hal9001
-https://github.com/mostanes/umbrella2
-https://github.com/vsoch/gridtest
-https://github.com/timoast/signac
-https://github.com/jgrembi/riskCommunicator
-https://github.com/cytham/nanovar
-https://github.com/stinefm/relsad
-https://github.com/ageorgakakis/StructureFunction
-https://github.com/coccoinomane/zelda
-https://github.com/xfangcosmo/FFTLog-and-beyond
-https://github.com/GalagaBits/JWST-FGS-Spelunker
-https://github.com/ImperialCollegeLondon/magda_tools
-https://github.com/cuDisc/cuDisc
-https://github.com/openvax/pyensembl
-https://github.com/MNGuenther/allesfitter
-https://github.com/Starlink/aspic
-https://github.com/fpavogt/E0102-VR
-https://github.com/ericsteinbring/World_Observatory
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-https://github.com/jobovy/stream-stream
-https://github.com/devitocodes/devito
-https://github.com/project-asgard/asgard
-https://github.com/prajwel/curvit
-https://github.com/Muhammad-Arif-NUST/BVP_Pred_Unb
-https://github.com/domenico-simone/rmlst_api
-https://github.com/nlesc-dirac/sagecal
-https://github.com/moscibrodzka/ipole
-https://github.com/mlaparie/phidget-tools
-https://github.com/pixixiaonaogou/MLSDR
-https://github.com/lucian-ilie/DELPHI
-https://github.com/U-Alberta/ADaPT-ML
-https://github.com/broadinstitute/gatk
-https://github.com/ExoplanetML/Nigraha
-https://github.com/BiocomputeLab/paraSBOLv
-https://github.com/fenderglass/Flye
-https://github.com/keatonb/Pyriod
-https://github.com/OpenGene/fastp
-https://github.com/iobio-zjut/IPTDFold
-https://github.com/guangtunbenzhu/NonnegMFPy
-https://github.com/gmbrandt/HTOF
-https://github.com/arcaldwell49/SimplyAgree
-https://github.com/andresmegias/richvalues
-https://github.com/r-spatialecology/shar
-https://github.com/wdecoster/chopper
-https://github.com/PetervanLunteren/EcoAssist
-https://github.com/alexrhowe/APOLLO
-https://github.com/vishwas1984/LaplaceInterpolation.jl
-https://github.com/smoh/kinesis
-https://github.com/JIBSIL/DistriFS
-https://github.com/xuanxu/starmatrix
-https://github.com/molscat/molscat
-https://github.com/kdeck/TTVFast
-https://github.com/lh3/seqtk
-https://github.com/ERPI-UL/HELP-VRclient
-https://github.com/cbottrell/realsim_ifs
-https://github.com/lime-rt/lime
-https://github.com/marbl/Krona
-https://github.com/exoclime/THOR
-https://github.com/Effective-Quadratures/Effective-Quadratures
-https://github.com/STOmics/EAGS
-https://github.com/artic-network/readucks
-https://github.com/markur4/plotastic
-https://github.com/multiwavelength/redshifts
-https://github.com/morispi/LRez
-https://github.com/zhoulinumass/ML-wPBE
-https://github.com/rdpstaff/classifier
-https://github.com/ropensci/isdparser
-https://github.com/ropensci/gtfsr
-https://github.com/qiime2/q2-vsearch
-https://github.com/taxprofiler/taxpasta
-https://github.com/ruizengalways/FOD-Net
-https://github.com/yi-jia-li/cue
-https://github.com/plazar/coast_guard
-https://github.com/DEIB-GECO/GeneNetFusion
-https://github.com/shbhuk/barycorrpy
-https://github.com/BenWibking/quokka
-https://github.com/ruanjue/wtdbg2
-https://github.com/bommert/stabm
-https://github.com/hues-platform/cesar-p-core
-https://github.com/AndreyTavleev/DiscVerSt
-https://github.com/anmolter/XLUR
-https://github.com/imr-framework/OCTOPUS
-https://github.com/morpheus-project/morpheus
-https://github.com/astropy/astroquery
-https://github.com/AllenInstitute/bmtk
-https://github.com/lh3/bioawk
-https://github.com/ladsantos/p-winds
-https://github.com/cosimoNigro/agnpy
-https://github.com/qcxms/QCxMS
-https://github.com/mlr-org/mcboost
-https://github.com/GabrielNakamura/FishPhyloMaker
-https://github.com/cosmicrays/hermes
-https://github.com/dgarrimar/sqtlseeker2-nf
-https://github.com/marcelm/cutadapt
-https://github.com/MichielsenM/FOAM
-https://github.com/pennucci/PulsePortraiture
-https://github.com/flu-crew/smot
-https://github.com/dib-lab/TheGreatGenotyper
-https://github.com/ropensci/cyphr
-https://github.com/akinremisa/rfsed
-https://github.com/nworbde/dStar
-https://github.com/RoryChenXY/DataRepExp_public
-https://github.com/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection
-https://github.com/odlomax/spamcart-dev
-https://github.com/fraserw/trippy
-https://github.com/dgerosa/surrkick
-https://github.com/LucaMalavolta/PyORBIT
-https://github.com/BradGreig/21CMMC
-https://github.com/bayzidlab/SAINT-Angle
-https://github.com/ropensci/osmplotr
-https://github.com/ConorMacBride/mcalf
-https://github.com/PEJpOhno/SMiPoly
-https://github.com/JuliaQX/QXTools.jl
-https://github.com/FZJ-IEK3-VSA/ETHOS_PeNALPS
-https://github.com/dondi/GRNsight
-https://github.com/GBLille/MassiveFold
-https://github.com/LCOGT/banzai-nres
-https://github.com/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework
-https://github.com/ropensci/rcol
-https://github.com/nikhil-sarin/redback
-https://github.com/dpthorngren/PlanetSlicer
-https://github.com/Keck-DataReductionPipelines/KcwiDRP
-https://github.com/fair-workflows/fairworkflows
-https://github.com/YangLab/RNAlight
-https://github.com/LINNAE-project/SFB-Annotator
-https://github.com/ropensci/rplos
-https://github.com/wdpozzo/raynest
-https://github.com/jspsych/jsPsych
-https://github.com/fmihpc/vlasiator
-https://github.com/luizfelippesr/galmag
-https://github.com/COSMIC-PopSynth/COSMIC
-https://github.com/COMBINE-lab/simpleaf
-https://github.com/xenon-middleware/xenon-flow
-https://github.com/hippylib/soupy
-https://github.com/cosmo-ethz/seek
-https://github.com/msalibian/RBF
-https://github.com/mlipatov/paint_atmospheres
-https://github.com/brian-lau/MatlabAUC
-https://github.com/rabix/cwl-format
-https://github.com/indrops/indrops
-https://github.com/Kambrian/HBTplus
-https://github.com/radio1988/OneStopRNAseq
-https://github.com/yangfangs/test_GFICLEE
-https://github.com/pudu-py/pudu
-https://github.com/EMResearch/EvoMaster
-https://github.com/PedroBarbosa/VETA
-https://github.com/radio-astro-tools/pvextractor
-https://github.com/VanLoo-lab/ascat
-https://github.com/arvados/arvados
-https://github.com/arnikz/PIQMIe
-https://github.com/JanCBrammer/biopeaks
-https://github.com/KeplerGO/pyke
-https://github.com/pangenome/smoothxg
-https://github.com/JetBrains-Research/spbla
-https://github.com/cobilab/RFSC
-https://github.com/rainwoodman/bigfile
-https://github.com/yaml2sbml-dev/yaml2sbml
-https://github.com/ratt-ru/Stimela
-https://github.com/ncbi/SRPRISM
-https://github.com/jalombar/starsmasher
-https://github.com/inrae/RCaNmodel
-https://github.com/trivnguyen/florah
-https://github.com/coccoinomane/song
-https://github.com/r-lib/credentials
-https://github.com/peikuan/WBBC
-https://github.com/DrexelLenser/Lenser
-https://github.com/JuliaMatrices/LazyBandedMatrices.jl
-https://github.com/lsncibb/microbiomeGWAS
-https://github.com/biocore/sortmerna
-https://github.com/StingraySoftware/HENDRICS
-https://github.com/Parsl/parsl
-https://github.com/ncbi/vadr
-https://github.com/ropensci/USAboundaries
-https://github.com/neurogeriatricskiel/KielMAT
-https://github.com/NLESC-JCER/Fortran_Davidson
-https://github.com/ChemaPalencia/M_SMiLe
-https://github.com/beckermr/calclens
-https://github.com/pontoppi/radlite
-https://github.com/lanl/scico
-https://github.com/pangeo-data/climpred
-https://github.com/sidchaini/DistClassiPy
-https://github.com/ropensci/mapr
-https://github.com/alexander-shen/rtest
-https://github.com/Starlink/perl-Starlink-Autoastrom
-https://github.com/codidact/qpixel
-https://github.com/CarlosCoba/XookSuut-code
-https://github.com/mrc-ide/dust
-https://github.com/podondra/bayesian-sznet
-https://github.com/NLeSC/lokum
-https://github.com/xavierdidelot/ClonalFrameML
-https://github.com/Music-and-Culture-Technology-Lab/omnizart
-https://github.com/ucl-exoplanets/ExoTETHyS
-https://github.com/henrysky/astroNN
-https://github.com/Jinsl-lab/SDImpute
-https://github.com/ShixiangWang/sigminer
-https://github.com/dlinssen/sunbather
-https://github.com/narunlifescience/runcircos-gui
-https://github.com/ropensci/fingertipsR
-https://github.com/JixingGE/GGCHEMPY
-https://github.com/intelligent-soft-robots/o80
-https://github.com/jeremysanders/spex_to_xspec
-https://github.com/yangao07/TideHunter
-https://github.com/ropensci/handlr
-https://github.com/jonaselgammal/GPry
-https://github.com/jcorbino/mole
-https://github.com/frank1010111/bluebonnet
-https://github.com/Rohit-Kundu/ET-NET_Covid-Detection
-https://github.com/SWIFTSIM/emulator
-https://github.com/TinkerTools/tinker9
-https://github.com/NLeSC/DiVE
-https://github.com/RichardMoot/LinearOne
-https://github.com/davidebolo1993/TRiCoLOR
-https://github.com/leirufeng/iEnhancer-DCSV
-https://github.com/reznik-lab/MIRTH
-https://github.com/tofflemire/saphires
-https://github.com/max0x7ba/atomic_queue
-https://github.com/GRTLCollaboration/GRFolres
-https://github.com/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys
-https://github.com/vcflib/bio-vcf
-https://github.com/nemesiscode/radtrancode
-https://github.com/lmwalkowicz/Cheetah
-https://github.com/ropensci/crul
-https://github.com/transientskp/tkp
-https://github.com/undark-lab/sstrax
-https://github.com/kimpenn/VERSE
-https://github.com/creaneroDIAS/beamModelTester
-https://github.com/rodluger/planetplanet
-https://github.com/ropensci/rcites
-https://github.com/y-256/libdivsufsort
-https://github.com/Box-Tools/BoxKit
-https://github.com/COMBINE-lab/pufferfish
-https://github.com/Substra/substra
-https://github.com/sorenwacker/ProteomicsQC
-https://github.com/lydialucchesi/Vizumap
-https://github.com/biocore/emperor
-https://github.com/brentp/nim-lapper
-https://github.com/jradcliffe5/multi_self_cal
-https://github.com/MIC-DKFZ/HD-BET
-https://github.com/abmantz/rgw
-https://github.com/brentp/cyvcf2
-https://github.com/emhuff/Balrog
-https://github.com/ArtificialStellarPopulations/ArtPop
-https://github.com/DICP1810/SpotLink
-https://github.com/jobovy/extreme-deconvolution
-https://github.com/DataIntellSystLab/KARGA
-https://github.com/ckay314/OSPREI
-https://github.com/sebastien-plutniak/archeofrag
-https://github.com/xinglunju/pyAmor
-https://github.com/tyo-nu/pickaxe_paper
-https://github.com/bmorris3/fleck
-https://github.com/ziotom78/libpolycomp
-https://github.com/actris-cloudnet/mwrpy
-https://github.com/Gabaldonlab/karyon
-https://github.com/veg/tn93
-https://github.com/RajLabMSSM/echolocatoR
-https://github.com/david-barnett/microViz
-https://github.com/lbcb-sci/graphmap2
-https://github.com/kegiljarhus/pyBEMT
-https://github.com/FergusDonnan/PyROA
-https://github.com/milnus/Corekaburra
-https://github.com/nlesc-nano/Moka
-https://github.com/citiususc/BigSeqKit
-https://github.com/moldyn/msmhelper
-https://github.com/QuantEcon/QuantEcon.py
-https://github.com/DEIB-GECO/MutViz
-https://github.com/ejhigson/perfectns
-https://github.com/3D-e-Chem/knime-testflow
-https://github.com/LindaNab/mecor
-https://github.com/calebclass/Shiny-NanoTube
-https://github.com/hongli-ma/RNANetMotif
-https://github.com/SMTG-Bham/doped
-https://github.com/zpliulab/GENELink
-https://github.com/NLeSC/python-pcl
-https://github.com/fred3m/toyz
-https://github.com/bio-tools/biotoolsSum
-https://github.com/Sydney-Informatics-Hub/OmixLitMiner
-https://github.com/chainsawriot/sweater
-https://github.com/daissi/thesias
-https://github.com/RoelofBerg/limereg
-https://github.com/soilwater/crnpy
-https://github.com/ZJUFanLab/scTITANS
-https://github.com/adrn/pyia
-https://github.com/milnus/Magphi
-https://github.com/jfarek/xatlas
-https://github.com/andresGranadosC/GalRotpy
-https://github.com/iric-soft/km
-https://github.com/kavonrtep/dante
-https://github.com/RoryBarnes/EqTide
-https://github.com/yangfangs/KPP
-https://github.com/itpplasma/GORILLA
-https://github.com/daniloceano/LorenzCycleToolkit
-https://github.com/fermiPy/fermipy
-https://github.com/ropensci/babette
-https://github.com/aneeshnaik/lintsampler
-https://github.com/Illumina/pyflow
-https://github.com/jeetsukumaran/DendroPy
-https://github.com/igvteam/igv-reports
-https://github.com/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner
-https://github.com/gbrammer/grizli
-https://github.com/exafmm/exafmm-t
-https://github.com/IndrajeetPatil/ggstatsplot
-https://github.com/pec27/lizard
-https://github.com/kno10/python-kmedoids
-https://github.com/EmmanuelSchaan/LensQuEst
-https://github.com/ropensci/rWBclimate
-https://github.com/YuRui8879/MRASleepNet
-https://github.com/baxmittens/OpenGeoSysUncertaintyQuantification.jl
-https://github.com/fgbuster/fgbuster
-https://github.com/single-cell-genetics/cellsnp-lite
-https://github.com/libdynd/dynd-python
-https://github.com/ProfessorBrunner/rc3-pipeline
-https://github.com/marieBvr/virAnnot
-https://github.com/ropensci/mauricer
-https://github.com/RadioAstronomySoftwareGroup/pyradiosky
-https://github.com/Pranab-JD/LeXInt
-https://github.com/joe-antognini/kozai
-https://github.com/Punzo/SlicerAstro
-https://github.com/planck-npipe/hillipop
-https://github.com/ScialdoneLab/MitoHEAR
-https://github.com/aikubo/LinkingLines
-https://github.com/pmlmodelling/nctoolkit
-https://github.com/QuantumPlasma/SFQEDtoolkit
-https://github.com/giuspugl/MCMole3D
-https://github.com/pcubillos/repack
-https://github.com/MADHATdm/MADHAT
-https://github.com/ropensci/plotly
-https://github.com/dunhamlab/PacRAT
-https://github.com/oliveirara/polyMV
-https://github.com/gmbrandt/xwavecal
-https://github.com/chainsawriot/oolong
-https://github.com/labsquare/CutePeaks
-https://github.com/Trovemaster/Duo
-https://github.com/s-will/LocARNA
-https://github.com/RuthAngus/stardate
-https://github.com/sebhaan/geobo
-https://github.com/vembrane/vembrane
-https://github.com/rasg-affiliates/21cmSense
-https://github.com/macs3-project/MACS
-https://github.com/meinardmueller/synctoolbox
-https://github.com/ropensci/infx
-https://github.com/nanoporetech/pychopper
-https://github.com/NLeSC/hadrianus-scripts
-https://github.com/mrazomej/AutoEncoderToolkit.jl
-https://github.com/aabdurrouf/piXedfit
-https://github.com/EliseJ/superabc
-https://github.com/szhorvat/IGraphM
-https://github.com/wcxve/elisa
-https://github.com/octopus-sensing/octopus-sensing
-https://github.com/parkus/ffd
-https://github.com/AlexanderLabWHOI/EUKulele
-https://github.com/ropensci/taxa
-https://github.com/multiwavelength/gleam
-https://github.com/christophmschaefer/miluphcuda
-https://github.com/JuliaMatrices/BandedMatrices.jl
-https://github.com/xpsi-group/xpsi
-https://github.com/hansenjohnson/WhaleMap
-https://github.com/DreamCloud-Project/McSim-Cycle-accurate-Xbar
-https://github.com/dib-lab/dammit
-https://github.com/ElsevierSoftwareX/SOFTX_2020_119
-https://github.com/Smith42/XDF-GAN
-https://github.com/sfeeney/ddspectra
-https://github.com/eucp-project/storyboards
-https://github.com/moead-framework/framework
-https://github.com/basp-group/sopt
-https://github.com/ptriska/WavesDash
-https://github.com/kboone/avocado
-https://github.com/easystats/effectsize
-https://github.com/PopGenClustering/Clumppling
-https://github.com/PacificBiosciences/pbcore
-https://github.com/galaxy001/pirs
-https://github.com/cire-thk/BifacialSimu
-https://github.com/jakelever/civicmine
-https://github.com/pezmaster31/bamtools
-https://github.com/pni-lab/mlconfound
-https://github.com/Mulan-94/smops
-https://github.com/bbbbbbzhou/MDPET
-https://github.com/ezer/PAFway
-https://github.com/takfung/ResDisMapper
-https://github.com/ACCarnall/SpectRes
-https://github.com/lnscan/mitoSplitter
-https://github.com/BRAIN-TO/GIRFReco.jl
-https://github.com/basp-group/SARA-dimensionality-reduction
-https://github.com/ShaunFell/GRBoondi
-https://github.com/nbellomo/Multi_CLASS
-https://github.com/dcouvin/CRISPRCasFinder
-https://github.com/octapps/octapps
-https://github.com/NLeSC/ShiCo
-https://github.com/uab-cgds-worthey/quac
-https://github.com/anuwu/GOTHIC
-https://github.com/PyDL/cat-puma
-https://github.com/franciscovillaescusa/Pylians3
-https://github.com/j-erler/pymf
-https://github.com/Kaixhin/Rainbow
-https://github.com/EnergyModelsX/EnergyModelsBase.jl
-https://github.com/aiidateam/kiwipy
-https://github.com/henrycousins/gspa
-https://github.com/mperezcarrasco/AnomalyALeRCE
-https://github.com/bioinfo-ut/PlasmidSeeker
-https://github.com/gtayana/CVRMS
-https://github.com/sunnyvagnozzi/Braneworld-extra-dimensions
-https://github.com/dvallesp/vortex
-https://github.com/gxiaolab/scAllele
-https://github.com/jesford/cluster-lensing
-https://github.com/icredd-cheminfo/CGRdb2
-https://github.com/tbronzwaer/raptor
-https://github.com/CullanHowlett/l-picola
-https://github.com/djones1040/PythonPhot
-https://github.com/PaulMcMillan-Astro/Torus
-https://github.com/ewanbarr/peasoup
-https://github.com/tcassanelli/pywpf
-https://github.com/ThomasMBury/ewstools
-https://github.com/abelson-lab/smMIP-tools
-https://github.com/lantunes/cellpylib
-https://github.com/EmmanuelSchaan/HaloGen
-https://github.com/fulcrumgenomics/fgbio
-https://github.com/BlackHolePerturbationToolkit/KerrGeoPy
-https://github.com/alexander-mead/pyhalomodel
-https://github.com/theonefromnowhere/FitCov
-https://github.com/ropensci/qpdf
-https://github.com/vrodgom/statmorph
-https://github.com/rjtanner/StarburstPy
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-https://github.com/dunnkers/fseval
-https://github.com/jdber1/opendrop
-https://github.com/ropensci/dbparser
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-https://github.com/binzhulab/SUITOR
-https://github.com/ratt-ru/rodrigues
-https://github.com/healytwin1/HISS
-https://github.com/CompGenomeLab/boquila
-https://github.com/zhanghe9704/tpsa
-https://github.com/openmm/openmm
-https://github.com/natashabatalha/PandExo
-https://github.com/delphes/delphes
-https://github.com/dipol-uf/DIPOL-UF
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-https://github.com/FZJ-IEK3-VSA/LoadProfileGenerator
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-https://github.com/BitSeq/BitSeq
-https://github.com/mcfrith/tandem-genotypes
-https://github.com/spacetelescope/specview
-https://github.com/RafiKueng/SpaghettiLens
-https://github.com/frescigno/magpy_rv
-https://github.com/ajshajib/LensingETC
-https://github.com/maxbernyk/lightcone
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-https://github.com/ropensci/colocr
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-https://github.com/gmarcais/Jellyfish
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-https://github.com/eblur/dust
-https://github.com/EbmeyerSt/GEnView
-https://github.com/UUDigitalHumanitieslab/texcavator
-https://github.com/UoMMIB/TFBMiner
-https://github.com/pymatting/pymatting
-https://github.com/mirochaj/sedop
-https://github.com/cboursnell/crb-blast
-https://github.com/ImperialCollegeLondon/adam
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-https://github.com/farhanferoz/BAMBI
-https://github.com/mpievolbio-scicomp/cancer_sim
-https://github.com/SDTC-CPMed/scDrugPrio
-https://github.com/zjupgx/modig
-https://github.com/IndrajeetPatil/statsExpressions
-https://github.com/MD-Studio/cerise
-https://github.com/johnpaulett/python-hl7
-https://github.com/asgr/Rwcs
-https://github.com/fkoehlin/montepython_2cosmos_public
-https://github.com/heliopython/heliopy
-https://github.com/hippke/PyOSE
-https://github.com/pyranges/pyrle
-https://github.com/yfperezg/frisbhee
-https://github.com/ropensci/SymbiotaR2
-https://github.com/i-VRESSE/workflow-builder
-https://github.com/erikhom/aida
-https://github.com/calboo/Potential_Field_Calculator
-https://github.com/OMBoersma/DeepGlow
-https://github.com/OpenBioLink/Explorer
-https://github.com/bcgsc/arcs
-https://github.com/damocles-code/damocles
-https://github.com/netrias/rnassist
-https://github.com/ImperialCollegeLondon/epidemia
-https://github.com/CosmoLike/CosmoCov
-https://github.com/htjb/globalemu
-https://github.com/karlotness/adrt
-https://github.com/NLeSC/mcfly
-https://github.com/radiocosmology/draco
-https://github.com/dolaver/calsagos
-https://github.com/bertrandplez/Turbospectrum_NLTE
-https://github.com/sheneman/clearcut
-https://github.com/tberlok/paicos
-https://github.com/florpi/sunbird
-https://github.com/elsoroka/Satisfiability.jl
-https://github.com/PDB-REDO/tortoize
-https://github.com/FelixKrueger/TrimGalore
-https://github.com/nvalimak/fsm-lite
-https://github.com/2decomp-fft/2decomp-fft
-https://github.com/scikit-image/scikit-image
-https://github.com/pyccel/pyccel
-https://github.com/ropensci/gittargets
-https://github.com/Climdyn/qgs
-https://github.com/hpgem/nanomesh
-https://github.com/glue-viz/glue
-https://github.com/NLeSC/compressing-the-sky
-https://github.com/fogellab/multiWGCNA
-https://github.com/sjforeman/bskit
-https://github.com/EvolBioInf/phylonium
-https://github.com/RECETOX/recetox-msfinder
-https://github.com/MetazoaPhylogenomicsLab/FANTASIA
-https://github.com/bwengals/ccsnmultivar
-https://github.com/PEREGRINE-GW/peregrine
-https://github.com/ropensci/paleobioDB
-https://github.com/c-martinez/BeyondTheBook
-https://github.com/sklasfeld/DANPOS3
-https://github.com/ropensci/rperseus
-https://github.com/vallis/libstempo
-https://github.com/luinix/pesco
-https://github.com/caselawanalytics/CaseLawAnalytics
-https://github.com/devitocodes/pyrevolve
-https://github.com/CosmoStat/nicaea
-https://github.com/dzesmin/TEA
-https://github.com/egstrom/cluster-in-a-box
-https://github.com/ropensci/essurvey
-https://github.com/nrao/UniPOPS
-https://github.com/ropensci/landscapetools
-https://github.com/bengeof/QPoweredCompound2DeNovoDrugPropMax
-https://github.com/DariaGangardt/pAGN
-https://github.com/SoFiA-Admin/SoFiA-2
-https://github.com/laristra/flecsph
-https://github.com/IPIS-XieLei/CNTSeg
-https://github.com/dhubber/seren
-https://github.com/SMTG-Bham/ThermoParser
-https://github.com/galtay/urchin
-https://github.com/kowallus/mbgc
-https://github.com/HaowenZhang/TRINITY
-https://github.com/wokast/PyCactus
-https://github.com/mrvollger/rustybam
-https://github.com/tidyverse/glue
-https://github.com/TRIQS/solid_dmft
-https://github.com/NoahSailer/FishLSS
-https://github.com/xCDAT/xcdat
-https://github.com/deeptools/pyBigWig
-https://github.com/ArgonneCPAC/diffstar
-https://github.com/cpinte/pymcfost
-https://github.com/ropensci/jsonld
-https://github.com/ropensci/assertr
-https://github.com/VU-BEAM-Lab/GENRE
-https://github.com/ropensci/taxview
-https://github.com/rvaser/spoa
-https://github.com/materialsproject/pymatgen-analysis-defects
-https://github.com/COINtoolbox/CosmoPhotoz
-https://github.com/bihealth/sodar_core
-https://github.com/rambaut/jebl2
-https://github.com/rrwick/Deepbinner
-https://github.com/shergreen/SatGen
-https://github.com/AstrobioMike/GToTree
-https://github.com/LMBooth/pybci
-https://github.com/EESI/Complet-Plus
-https://github.com/wuzhenao/CPPLS-MLP
-https://github.com/abeelen/powspec
-https://github.com/jczarnowski/DeepFactors
-https://github.com/annagraff/densify
-https://github.com/astro-informatics/RequiSim
-https://github.com/bwinkel/cygrid
-https://github.com/vidarsko/ComFiT
-https://github.com/faasm/faasm
-https://github.com/bd-j/prospector
-https://github.com/TNEL-UCSD/autolfads-deploy
-https://github.com/fair-software/howfairis
-https://github.com/asgr/ProFound
-https://github.com/jeremysanders/ggm
-https://github.com/ropensci/cleanEHR
-https://github.com/C0PEP0D/otto
-https://github.com/ELELAB/RosettaDDGPrediction
-https://github.com/PDB-REDO/libcifpp
-https://github.com/ericmandel/funtools
-https://github.com/raspishake/rsudp
-https://github.com/Siegel-Lab/BioSmoother
-https://github.com/astro-friedel/CADRE
-https://github.com/jonas-fuchs/varVAMP
-https://github.com/dtcc-platform/dtcc-builder
-https://github.com/jonas/tig
-https://github.com/ropensci/fauxpas
-https://github.com/fbreitwieser/krakenuniq
-https://github.com/CGAL/cgal
-https://github.com/ParBLiSS/FastANI
-https://github.com/IMB-Computational-Genomics-Lab/scGPS
-https://github.com/FlowModelingControl/flowtorch
-https://github.com/desResLab/LINFA
-https://github.com/tseemann/samclip
-https://github.com/valentineap/pyprop8
-https://github.com/Kaixhin/dockerfiles
-https://github.com/DEIB-GECO/ReRa
-https://github.com/mlujnie/simple
-https://github.com/EoRImaging/FHD
-https://github.com/curl/curl
-https://github.com/jmschrei/pomegranate
-https://github.com/google/caliban
-https://github.com/beagle-dev/beagle-lib
-https://github.com/lysovosyl/NanoDeep
-https://github.com/ropensci-review-tools/pkgstats
-https://github.com/afarahi/kllr
-https://github.com/MetaCell/scicrunch-antibody-registry
-https://github.com/JGCRI/rfasst
-https://github.com/elizabethnewman/hessQuik
-https://github.com/lightning-project/lightning
-https://github.com/JesusTorrado/extrapops
-https://github.com/pencil-code/pencil-code
-https://github.com/caracal-pipeline/caracal
-https://github.com/PacificBiosciences/HiPhase
-https://github.com/pmelchior/epsnoise
-https://github.com/ropensci/trufflesniffer
-https://github.com/bow/fsnviz
-https://github.com/abs2k12/COCOA
-https://github.com/pscicluna/precision
-https://github.com/UM-KevinHe/surtvep
-https://github.com/mmore500/hstrat
-https://github.com/prmunday/Immunolyser
-https://github.com/AMSSwanglab/SpecVar
-https://github.com/mjuric/galfast
-https://github.com/GENtle-persons/gentle-m
-https://github.com/GalacticDynamics-Oxford/Agama
-https://github.com/pypeit/PypeIt
-https://github.com/biocircuits/bioscrape
-https://github.com/ropensci/charlatan
-https://github.com/pierrexyz/cbird
-https://github.com/flekschas/regl-scatterplot
-https://github.com/JensUweUlrich/ReadBouncer
-https://github.com/thomasorb/orbs
-https://github.com/ProjectPyRhO/PyRhO
-https://github.com/tobiasrausch/lorax
-https://github.com/teuben/DataComb
-https://github.com/VBlesius/RHRT
-https://github.com/jdhenshaw/SCOUSE
-https://github.com/dtanoglidis/DeepShadows
-https://github.com/twopin/CAMP
-https://github.com/ropensci/c14bazAAR
-https://github.com/Hi-COLACode/Hi-COLA
-https://github.com/stammler/simframe
-https://github.com/cbirdferrer/collatrix
-https://github.com/aringlis/afino_release_version
-https://github.com/danhey/echelle
-https://github.com/johannes-titz/cofad
-https://github.com/NorwegianVeterinaryInstitute/ALPPACA
-https://github.com/bcbio/bcbio.variation.recall
-https://github.com/gasparl/possa
-https://github.com/sibyllema/Fast-Multiscale-Diffusion-on-Graphs
-https://github.com/connectomicslab/connectomemapper3
-https://github.com/mrc-ide/ring
-https://github.com/ncbi/igblast
-https://github.com/NLeSC/cptm
-https://github.com/bedops/bedops
-https://github.com/cwentland0/perform
-https://github.com/oscaribv/citlalicue
-https://github.com/JannisHoch/copro
-https://github.com/eldariont/svim
-https://github.com/saberyoung/HAFFET
-https://github.com/nhejazi/txshift
-https://github.com/artic-network/fieldbioinformatics
-https://github.com/locasto/libdisorder
-https://github.com/sevenstarknight/LINEARSupervisedClassification
-https://github.com/richteague/bettermoments
-https://github.com/COMBINE-lab/RapMap
-https://github.com/muLAn-project/muLAn
-https://github.com/ropensci/weathercan
-https://github.com/ArnaudCassan/microlensing
-https://github.com/ropensci-archive/arresteddev
-https://github.com/latrop/DECA
-https://github.com/HIPS/autograd
-https://github.com/AIgnesti/PT-REX
-https://github.com/XSLiuLab/Seq2Neo
-https://github.com/felixbosco/KeplerFit
-https://github.com/koszullab/pareidolia
-https://github.com/gpertea/cdbfasta
-https://github.com/ropensci/rrlite
-https://github.com/dgerosa/gwdet
-https://github.com/chadagreene/Tide-Model-Driver
-https://github.com/nf-core/sarek
-https://github.com/mpc-bioinformatics/CalibraCurve
-https://github.com/CosmoTool/ECLIPSE
-https://github.com/circuitgraph/circuitgraph
-https://github.com/ratt-ru/montblanc
-https://github.com/mpip/pfft
-https://github.com/zheng-lh/UBER
-https://github.com/abhisrkckl/GWecc
-https://github.com/cochran4/GEMB
-https://github.com/SandyYuan/GRAND-HOD
-https://github.com/hcdenbakker/sepia
-https://github.com/bradkav/BlackHolesDarkDress
-https://github.com/nedRad88/SCALAR
-https://github.com/monarch-initiative/loinc2hpo
-https://github.com/jadexter/grtrans
-https://github.com/srdc/onfhir
-https://github.com/changhoonhahn/haloflow
-https://github.com/ropensci/spelling
-https://github.com/AA-ALERT/AstroData
-https://github.com/ECP-copa/Cabana
-https://github.com/lsds/Saber
-https://github.com/nmslib/hnswlib
-https://github.com/naonori/hitomi
-https://github.com/NLeSC/eEcology-Classification
-https://github.com/JulianBMunoz/Zeus21
-https://github.com/bandframework/Taweret
-https://github.com/ginolhac/mapDamage
-https://github.com/andreaminio/HaploSync
-https://github.com/tylertrimble/viswaternet
-https://github.com/ni1o1/transbigdata
-https://github.com/agree019/DarkCapPy
-https://github.com/CityU-AIM-Group/HTD
-https://github.com/tcollett/LensPop
-https://github.com/jkluter/MLG
-https://github.com/pyBRAvo/pyBRAvo
-https://github.com/torognes/vsearch
-https://github.com/hyperopt/hyperopt
-https://github.com/ylab-hi/ScanExitronLR
-https://github.com/natir/yacrd
-https://github.com/MesserLab/SLiM
-https://github.com/gururajw/superlite
-https://github.com/dalya/WeirdestGalaxies
-https://github.com/phac-nml/mob-suite
-https://github.com/astro-informatics/stringgen
-https://github.com/samsledje/ConPLex_dev
-https://github.com/schulze61/RhoPop
-https://github.com/neuroanatomy/thresholdmann
-https://github.com/ropensci/worrms
-https://github.com/zhoux85/scAdapt
-https://github.com/mrtommyb/ktransit
-https://github.com/nlesc-nano/ceiba
-https://github.com/WGS-TB/MentaLiST
-https://github.com/GreenBankObservatory/gbtgridder
-https://github.com/CEMeNT-PSAAP/MCDC
-https://github.com/IBM/fold2seq
-https://github.com/MCTwo/MCMAC
-https://github.com/husseinaluie/FlowSieve
-https://github.com/michaelhb/superplot
-https://github.com/MayaWaves/mayawaves
-https://github.com/nutjunkie/IQmol
-https://github.com/CompNet/Renard
-https://github.com/soerendip/ms-mint
-https://github.com/comprna/reorientexpress
-https://github.com/rbturnbull/ausdex
-https://github.com/sarrvesh/cuFFS
-https://github.com/pmelchior/skymapper
-https://github.com/PyPO-dev/PyPO
-https://github.com/eggplantbren/DNest4
-https://github.com/basp-group/Puri-Psi
-https://github.com/user29A/fastrometry
-https://github.com/PaulRitsche/DL_Track_US
-https://github.com/rdpstaff/ReadSeq
-https://github.com/ImperialCollegeLondon/R2T2
-https://github.com/Shamir-Lab/domino_web
-https://github.com/martinjzhang/scDRS
-https://github.com/spacetelescope/specviz
-https://github.com/NLeSC/PattyAnalytics
-https://github.com/mgcooper/baseflow
-https://github.com/ixkael/QuickSip
-https://github.com/abs-tudelft/variant-calling-at-scale
-https://github.com/NLeSC/UncertaintyVisualization
-https://github.com/DMGW-Goethe/imripy
-https://github.com/ropensci/tidypmc
-https://github.com/yyZhang14/dbEssLnc
-https://github.com/yiwenstat/MCPCA_PopGen
-https://github.com/biomedia-mira/blast-ct
-https://github.com/ropensci/namext
-https://github.com/DingshanDeng/DiskMINT
-https://github.com/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling
-https://github.com/mayuresh159/starsense_algorithms
-https://github.com/ropensci/cld3
-https://github.com/kbarbary/nestle
-https://github.com/staphopia/staphopia-paper
-https://github.com/eggplantbren/DNest3
-https://github.com/wtsi-hpag/HiLine
-https://github.com/jeremysanders/mbproj2
-https://github.com/PacificBiosciences/IsoSeq
-https://github.com/will-rowe/groot
-https://github.com/johnveitch/cpnest
-https://github.com/snugel/cas-offinder
-https://github.com/s-abbas/robnptests
-https://github.com/isovic/graphmap
-https://github.com/noatgnu/catapult
-https://github.com/ChengF-Lab/AOPEDF
-https://github.com/giswqs/geemap
-https://github.com/hover2pi/sedkit
-https://github.com/ryanvarley/ExoData
-https://github.com/davidsoergel/rtax
-https://github.com/uedaLabR/nanoDoc
-https://github.com/iquasere/UPIMAPI
-https://github.com/aymgal/COOLEST
-https://github.com/pyroll-project/pyroll-core
-https://github.com/NickMilsonPhysics/BinaryStarSolver
-https://github.com/MelanieKahl/MechAnalyze
-https://github.com/cdfortenbach/JET
-https://github.com/libgamera/GAMERA
-https://github.com/epfl-radio-astro/PINION
-https://github.com/SimonPfeifer/cows
-https://github.com/gtonkinhill/fastbaps
-https://github.com/natashabatalha/picaso
-https://github.com/Extraweich/homopy
-https://github.com/IUCNN/IUCNN
-https://github.com/plumed/plumed2
-https://github.com/jtschindler/sculptor
-https://github.com/astronomical-data-processing/RAPP
-https://github.com/JohannesBuchner/BXA
-https://github.com/joshspeagle/dynesty
-https://github.com/NREL/OpenOA
-https://github.com/kundajelab/phantompeakqualtools
-https://github.com/biocore-ntnu/epic2
-https://github.com/cobilab/altair
-https://github.com/danielemichilli/DM_phase
-https://github.com/PhaseTracer/PhaseTracer
-https://github.com/ropensci/USAboundariesData
-https://github.com/zgazak/TAP
-https://github.com/spacetelescope/imexam
-https://github.com/deeptools/HiCExplorer
-https://github.com/mariakotouza/TRIP-Tool
-https://github.com/soundata/soundata
-https://github.com/nextflow-io/nextflow
-https://github.com/CisnerosResearch/LICHEM
-https://github.com/mmollina/viewpoly
-https://github.com/jiwoncpark/baobab
-https://github.com/EMBL-Hentze-group/htseq-clip
-https://github.com/wonderful1/CNV-PG
-https://github.com/GATB/bcalm
-https://github.com/CobayaSampler/cobaya
-https://github.com/lucatelli/morphen
-https://github.com/eltevo/StePS
-https://github.com/SterlingYM/astroPIPS
-https://github.com/arabic-digital-humanities/adhtools
-https://github.com/simonsobs/mnms
-https://github.com/HuttleyLab/scitrack
-https://github.com/stevertaylor/gw_pta_emulator
-https://github.com/conda/conda
-https://github.com/Nico-Curti/rFBP
-https://github.com/neslusan/BELTCROSS2
-https://github.com/dazhwu/pydynpd
-https://github.com/ropensci/outcomerate
-https://github.com/ropensci/antanym
-https://github.com/FEniCS/basix
-https://github.com/dirostri/CREPE
-https://github.com/clawpack/clawpack
-https://github.com/Ashod/garli
-https://github.com/sdnjly/WSDL-AD
-https://github.com/institut-de-genomique/HAPO-G
-https://github.com/DistrictDataLabs/yellowbrick
-https://github.com/Goobley/Radynversion
-https://github.com/fair-software/fairtally
-https://github.com/VasilyKokorev/stardust
-https://github.com/compomics/DeepLC
-https://github.com/torognes/swarm
-https://github.com/isakro/shoredate
-https://github.com/jet-net/JetNet
-https://github.com/Narayana-Rao/PolSAR-tools
-https://github.com/MarkMageeAstro/Riddler
-https://github.com/cylammarco/ASPIRED
-https://github.com/hanyue36/nanoplexer
-https://github.com/brentp/peddy
-https://github.com/MRChemSoft/mrchem
-https://github.com/drupke/ifsred
-https://github.com/chfeder/turbulence_generator
-https://github.com/astrobrent/mappings
-https://github.com/mdsteiner/EFAtools
-https://github.com/oliverphilcox/RascalC
-https://github.com/djsutherland/py-sdm
-https://github.com/xenon-middleware/xenon-grpc
-https://github.com/ropensci/rdataretriever
-https://github.com/ropensci/mctq
-https://github.com/HajimeKawahara/sot
-https://github.com/QingyuLiaib/PLA-MoRe
-https://github.com/ropensci/zbank
-https://github.com/BioHPC/MegaD
-https://github.com/JEFworks-Lab/STdeconvolve
-https://github.com/scipion-em/scipion-em-continuousflex
-https://github.com/Illumina/strelka
-https://github.com/HenrykHaniewicz/PSRVoid
-https://github.com/yungkipreos/Min-CaLM
-https://github.com/pawni/BayesByHypernet
-https://github.com/ImperialCollegeLondon/champ
-https://github.com/marius311/cosmoslik
-https://github.com/florisvb/PyNumDiff
-https://github.com/fakedrtom/oncogemini
-https://github.com/EnricoCorsaro/DIAMONDS
-https://github.com/CMakePP/CMakePPLang
-https://github.com/HITS-AIN/GPCC.jl
-https://github.com/ZhaiLab-SUSTech/FLEPSeq
-https://github.com/Dailer/RCausticMass
-https://github.com/yanzhanglab/Graph2GO
-https://github.com/rajeshmondal18/MAPS
-https://github.com/mwanakijiji/rrlfe
-https://github.com/jamescasbon/PyVCF
-https://github.com/HengyueZ/astrofix
-https://github.com/oliverphilcox/HIPSTER
-https://github.com/SchmidtDSE/afscgap
-https://github.com/lammps/lammps
-https://github.com/cosimameyer/overviewR
-https://github.com/sbird/fake_spectra
-https://github.com/pjedge/longshot
-https://github.com/fhaghighi/TransVW
-https://github.com/asgr/hyper.fit
-https://github.com/Nextomics/nextsv
-https://github.com/KALMUS-Color-Toolkit/KALMUS
-https://github.com/ropensci/rglobi
-https://github.com/stermzsofi/TiDE
-https://github.com/v-morello/iqrm
-https://github.com/R-Vessel-X/SlicerRVXLiverSegmentation
-https://github.com/medema-group/bigslice
-https://github.com/wpb-astro/MCSED
-https://github.com/UM-PEPL/HallThruster.jl
-https://github.com/ropensci/finch
-https://github.com/jmason86/James-s-EVE-Dimming-Index-JEDI
-https://github.com/cog-imperial/galini
-https://github.com/tum-esm/pyra
-https://github.com/taehoryu/TDEmass
-https://github.com/OpenMDAO/dymos
-https://github.com/vterron/lemon
-https://github.com/nasa/K2CE
-https://github.com/biocore/deblur
-https://github.com/biocore/unifrac-binaries
-https://github.com/blankhaar/PORTAL
-https://github.com/sanger-pathogens/Bio-Tradis
-https://github.com/jmd-dk/concept
-https://github.com/ropensci/xslt
-https://github.com/tool-bin/ukbcc
-https://github.com/jeremysanders/xspec_emcee
-https://github.com/emunte/vaRHC
-https://github.com/moranegg/AffectationRO
-https://github.com/OSeMOSYS/otoole
-https://github.com/ropensci/pathviewr
-https://github.com/GoelandProver/Goeland
-https://github.com/DebduttaPaul/luminosity_function_of_lGRBs
-https://github.com/qmarcou/IGoR
-https://github.com/DESI-UR/VAST
-https://github.com/afarahi/tatter
-https://github.com/hpparvi/MuSCAT2_transit_pipeline
-https://github.com/SebastianBocquet/pygtc
-https://github.com/Chandra-MARX/marxs
-https://github.com/jcolinhill/pyilc
-https://github.com/exosports/MARGE
-https://github.com/xinyiguan/py2lispIDyOM
-https://github.com/sinc-lab/miRe2e
-https://github.com/mattyowl/astLib
-https://github.com/AstarVienna/skycalc_ipy
-https://github.com/daniellefenech/SERPent
-https://github.com/ChenYangyao/hipp
-https://github.com/ropensci/outsider
-https://github.com/Kaixhin/PlaNet
-https://github.com/bioinform/somaticseq
-https://github.com/Pas-Kapli/mptp
-https://github.com/AdmiralenOla/Scoary
-https://github.com/yhoogstrate/fastafs
-https://github.com/ropensci/popler
-https://github.com/bcgov/shinyssdtools
-https://github.com/tomoyukif/MCPtaggR
-https://github.com/weecology/retriever
-https://github.com/fmichel/MaDKit
-https://github.com/apertif/apercal
-https://github.com/skyfielders/python-skyfield
-https://github.com/STEllAR-GROUP/hpx
-https://github.com/bsafdi/stellarWakes
-https://github.com/DEIB-GECO/BC_Intrinsic_subtyping
-https://github.com/atzberg/mlmod
-https://github.com/exoclime/HELA
-https://github.com/mpeel/fastcc
-https://github.com/ropensci/natserv
-https://github.com/faircloth-lab/phyluce
-https://github.com/bwvdnbro/HydroCode1D
-https://github.com/MAnalytics/akmedoids
-https://github.com/DebduttaPaul/luminosity_function_of_sGRBs
-https://github.com/STEllAR-GROUP/octotiger
-https://github.com/chervias/DustFilaments
-https://github.com/NeotomaDB/neotoma2
-https://github.com/NLeSC/root-conda-recipes
-https://github.com/vidakris/flatwrm
-https://github.com/thegenemyers/DALIGNER
-https://github.com/0xCoto/Virgo
-https://github.com/aksholokhov/pysr3
-https://github.com/aberer/RogueNaRok
-https://github.com/MilesCranmer/PySR
-https://github.com/mraveri/tensiometer
-https://github.com/rezeebe/orbitN
-https://github.com/cdslaborg/paramonte
-https://github.com/markheckmann/OpenRepGrid.ic
-https://github.com/dealii/dealii
-https://github.com/tsfloss/BFast
-https://github.com/FarnazFouladi/HashSeq_Manuscript
-https://github.com/jonathansick/skyoffset
-https://github.com/ropensci/cchecks
-https://github.com/TravisWheelerLab/VIBES
-https://github.com/NCIP/visda
-https://github.com/vortex-exoplanet/VIP
-https://github.com/LucaJRossi/NIGO
-https://github.com/elkebir-group/derna
-https://github.com/arumugamlab/msamtools
-https://github.com/lkreidberg/batman
-https://github.com/HLasse/TextDescriptives
-https://github.com/rahulshah1397/LADDER
-https://github.com/VU-IVM/VineCopulas
-https://github.com/NLeSC/eAstroViz
-https://github.com/girder/viime
-https://github.com/pinellolab/CRISPResso2
-https://github.com/aboucaud/pypher
-https://github.com/A-Davies/LensCNN
-https://github.com/GOBLIN-Proj/goblin_lite
-https://github.com/ropensci/spiro
-https://github.com/pedro-acunha/SHEEP
-https://github.com/AshleySpindler/AstroVaDEr-Public
-https://github.com/weizhouUMICH/SAIGE
-https://github.com/wiederm/transformato
-https://github.com/teoxxx/nemiss_proper
-https://github.com/brentp/somalier
-https://github.com/koenderks/jaspAudit
-https://github.com/kendomaniac/rCASC
-https://github.com/dbuscher/pois
-https://github.com/snystrom/memes
-https://github.com/infer-actively/pymdp
-https://github.com/dgrun/FateID
-https://github.com/dsoave/JLS
-https://github.com/ropensci/grainchanger
-https://github.com/SunilAnandatheertha/PXO
-https://github.com/kadyb/rgugik
-https://github.com/TeamLEGWORK/LEGWORK
-https://github.com/dputhier/pygtftk
-https://github.com/Dylan-Aliberti/Kepler-Collisions
-https://github.com/ropensci/opencv
-https://github.com/stemangiola/tidyHeatmap
-https://github.com/biomedia-mira/deepscm
-https://github.com/dawolfgang/MRrelation
-https://github.com/SouthGreenPlatform/PyRice
-https://github.com/yupidevs/pactus
-https://github.com/jackmwolf/tehtuner
-https://github.com/NLeSC/boatswain
-https://github.com/carronj/plancklens
-https://github.com/ihrke/pypillometry
-https://github.com/yuansliu/minirmd
-https://github.com/mrc-ide/rrq
-https://github.com/SESMG/SESMG
-https://github.com/putonti/virMine
-https://github.com/ramadatta/CPgeneProfiler
-https://github.com/nanoporetech/pinfish
-https://github.com/epiforecasts/covidregionaldata
-https://github.com/IBM/topography-searcher
-https://github.com/youngjookim/sdr
-https://github.com/odb9402/CNNPeaks
-https://github.com/Dfupa/meTAline
-https://github.com/EddyRivasLab/hmmer
-https://github.com/JoschaJ/mockFRBhosts
-https://github.com/niceume/datasailr
-https://github.com/eWaterCycle/setup-grpc
-https://github.com/theislab/scCODA
-https://github.com/wcoulton/CompressedFisher
-https://github.com/siavashk/pycpd
-https://github.com/eWaterCycle/Cesium-NcWMS
-https://github.com/ConnorDonegan/geostan
-https://github.com/radicamc/exoTEDRF
-https://github.com/rikenbit/nnTensor
-https://github.com/esteinig/nanoq
-https://github.com/simon-prunet/defringe
-https://github.com/debian-tex/texlive-nonbin
-https://github.com/hydroframe/hf_hydrodata
-https://github.com/vallima/PRyMordial
-https://github.com/NLeSC/pycoeman
-https://github.com/mrbell/fsclean
-https://github.com/Griffan/VerifyBamID
-https://github.com/vals/umis
-https://github.com/ashleefv/ACEInhibPKPD
-https://github.com/cschreib/egg
-https://github.com/rajewsky-lab/novosparc
-https://github.com/ropensci/readODS
-https://github.com/jakobherpich/pyICs
-https://github.com/szwiep/py_SBeLT
-https://github.com/danxhuber/galclassify
-https://github.com/ropensci/coder
-https://github.com/kibokov/GRUMPY
-https://github.com/pfaucon/PBSIM-PacBio-Simulator
-https://github.com/Nicholaswogan/photochem
-https://github.com/minkailin/stratsi
-https://github.com/gianthk/ciclope
-https://github.com/Michalychforever/AsPy
-https://github.com/bokunoBike/m6AGE
-https://github.com/bancaditalia/black-it
-https://github.com/ropensci/EndoMineR
-https://github.com/julblarod/SOPHISM
-https://github.com/grazianoucci/game
-https://github.com/realfastvla/rfpipe
-https://github.com/garrelt/C2-Ray3Dm1D_Helium
-https://github.com/ropensci/osmdata
-https://github.com/wmalab/EnHiC
-https://github.com/tvwenger/millennium-tap-query
-https://github.com/ChristopherWilks/megadepth
-https://github.com/sib-swiss/glittr
-https://github.com/kimberg/voxbo
-https://github.com/RongquanWang/ELF-DPC
-https://github.com/v-morello/clfd
-https://github.com/dingyaozhang/Evitar
-https://github.com/Ouranosinc/xclim
-https://github.com/nanoporetech/qcat
-https://github.com/jkimlab/msPIPE
-https://github.com/wdecoster/NanoPlot
-https://github.com/eaobservatory/jcmt_coadd
-https://github.com/pmelchior/skylens
-https://github.com/prdm0/ropenblas
-https://github.com/ejhigson/nestcheck
-https://github.com/raphael-group/hatchet
-https://github.com/AndresRTejedor/Mold
-https://github.com/valeriabonapersona/RePAIR
-https://github.com/TheJacksonLaboratory/SvAnna
-https://github.com/hpc4cmb/toast
-https://github.com/blackrim/phyutility
-https://github.com/heatherprince/cosmoped
-https://github.com/lberaldoesilva/naif
-https://github.com/katholt/Kaptive
-https://github.com/candYgene/siga
-https://github.com/quadram-institute-bioscience/dadaist2
-https://github.com/garrelt/C2-Ray1D
-https://github.com/Battery-Intelligence-Lab/dtw-cpp
-https://github.com/ropensci/tic
-https://github.com/pierrepo/autoclassweb
-https://github.com/donaldRwilliams/GGMnonreg
-https://github.com/Midnighter/dependency-info
-https://github.com/aviadpi/SparseBLS
-https://github.com/ropensci/rsat
-https://github.com/solerjuan/astroHOG
-https://github.com/ropensci/tidync
-https://github.com/mbejger/polgraw-allsky
-https://github.com/jeschaef/Graph4Med
-https://github.com/mrc-ide/individual
-https://github.com/xfangcosmo/2DFFTLog
-https://github.com/vallis/mc3pta
-https://github.com/nanograv/PINT
-https://github.com/nlesc-nano/flamingo
-https://github.com/pydemull/activAnalyzer
-https://github.com/dbosul/cwitools
-https://github.com/AstarVienna/AnisoCADO
-https://github.com/JSB-UCLA/scPNMF
-https://github.com/pinellolab/STREAM
-https://github.com/SMTG-UCL/ShakeNBreak
-https://github.com/ropensci-org/pkgreviewr
-https://github.com/davidkipping/LDC3
-https://github.com/facom/BHMcalc
-https://github.com/ucl-exoplanets/TauREx3_public
-https://github.com/ch-var/SMART
-https://github.com/shengjin/Nii
-https://github.com/jts/nanopolish
-https://github.com/bluefoxr/COINr
-https://github.com/cnsetzer/kilopop
-https://github.com/iancze/DiskJockey
-https://github.com/ropensci/rdefra
-https://github.com/bradkav/EarthScatterLikelihood
-https://github.com/s-goldman/Dusty-Evolved-Star-Kit
-https://github.com/ropensci/helminthR
-https://github.com/smandal97/Sprout
-https://github.com/lifs-tools/goslin
-https://github.com/andresmegias/gildas-class-python
-https://github.com/Bgi-LUSH/GPMeta
-https://github.com/simonsobs/so_noise_models
-https://github.com/radiocosmology/driftscan
-https://github.com/cieslar/Indri
-https://github.com/ncbi/ngs
-https://github.com/adamgayoso/totalVI_reproducibility
-https://github.com/BigDataBiology/argNorm
-https://github.com/WhaleConnect/whaleconnect
-https://github.com/carronj/LensIt
-https://github.com/scikit-learn-contrib/hdbscan
-https://github.com/seeh/surprise
-https://github.com/opimwue/ddop
-https://github.com/gymreklab/chips
-https://github.com/mikecokina/elisa
-https://github.com/tnakazato/priism
-https://github.com/mad-lab-fau/imucal
-https://github.com/jianhuupenn/SpaGCN
-https://github.com/smirik/resonances
-https://github.com/easystats/performance
-https://github.com/biomedia-mira/istn
-https://github.com/transientskp/lpf
-https://github.com/ratt-ru/eidos
-https://github.com/ChrisBeaumont/brut
-https://github.com/AMReX-Astro/MAESTROeX
-https://github.com/NLeSC/eEcology-SMS-reciever
-https://github.com/dipangwvu/SPEGID
-https://github.com/indraniel/fqgrep
-https://github.com/ropensci/FedData
-https://github.com/bartongroup/RoSA
-https://github.com/ec363/fpcountr
-https://github.com/HERA-Team/librarian
-https://github.com/AStcherbinine/omegapy
-https://github.com/puregome/notebooks
-https://github.com/malonge/RagTag
-https://github.com/cdanielmachado/carveme
-https://github.com/ropensci/allodb
-https://github.com/icecube/TauRunner
-https://github.com/leonzheng2/butterfly
-https://github.com/venkateshgopinath/FAlCon-DNS
-https://github.com/amusecode/TRES
-https://github.com/legacysurvey/unwise_psf
-https://github.com/KiranLDA/PAMLr
-https://github.com/cmzmasek/forester
-https://github.com/florian-lienhard/MM-LSD
-https://github.com/SofieVG/FlowSOM
-https://github.com/ejhigson/dyPolyChord
-https://github.com/sevimcengiz/Oryx-MRSI
-https://github.com/rajeshmondal18/ReionYuga
-https://github.com/rnikutta/rhocube
-https://github.com/meta-logic/sequoia
-https://github.com/philbull/RadioFisher
-https://github.com/DrSoulain/PREVIS
-https://github.com/seqan/flexbar
-https://github.com/julie-forman-kay-lab/SPyCi-PDB
-https://github.com/RangamaniLabUCSD/smart
-https://github.com/GRTLCollaboration/GRChombo
-https://github.com/grburgess/ronswanson
-https://github.com/volkamerlab/opencadd
-https://github.com/Ramialison-Lab-ARMI/3DCardiomics
-https://github.com/OwenWard/ppdiag
-https://github.com/Valcin/BE_HaPPy
-https://github.com/coolneighbors/unWISE-verse
-https://github.com/NBISweden/AGAT
-https://github.com/dixonlab/hic_breakfinder
-https://github.com/radio-astro-tools/spectral-cube
-https://github.com/uw-comphys/opencmp
-https://github.com/andresmegias/radex-python
-https://github.com/hendr1km/dropout
-https://github.com/cbalbin-bio/Epitopedia
-https://github.com/lnferris/ocean_data_tools
-https://github.com/ropensci/av
-https://github.com/ropensci/gistr
-https://github.com/deepsphere/deepsphere-cosmo-tf1
-https://github.com/fairdataihub/SPARClink
-https://github.com/lskatz/fasten
-https://github.com/astro-informatics/flaglet-archive
-https://github.com/soedinglab/spacepharer
-https://github.com/omuse-geoscience/omuse
-https://github.com/aneeshnaik/spam
-https://github.com/ropensci/smapr
-https://github.com/xiaochuanle/MECAT2
-https://github.com/GeneDx/scramble
-https://github.com/neherlab/nextalign
-https://github.com/Starlink/starlink
-https://github.com/soedinglab/plass
-https://github.com/tonhingm/PHOTOe-v1
-https://github.com/DrMarc/slab
-https://github.com/antoinediez/Sisyphe
-https://github.com/bio-phys/BioEn
-https://github.com/rsnemmen/BCES
-https://github.com/smsharma/fermi-gce-flows
-https://github.com/pyomeca/biosiglive
-https://github.com/deeptools/deeptools_intervals
-https://github.com/hpparvi/PyTransit
-https://github.com/rodluger/everest
-https://github.com/ppsp-team/PyNM
-https://github.com/ncbi/ncbi-vdb
-https://github.com/GeoffDuniam/FITS-Code-Examples
-https://github.com/BoPeng/simuPOP
-https://github.com/brainets/frites
-https://github.com/rrwick/Bandage
-https://github.com/TheFischerLab/FLEXR
-https://github.com/dansarie/sboxgates
-https://github.com/ropensci/ots
-https://github.com/andersen-lab/Freyja
-https://github.com/sibirrer/hierArc
-https://github.com/DrJCarson/BoundedCoalescent
-https://github.com/yangao07/abPOA
-https://github.com/gdalle/HiddenMarkovModels.jl
-https://github.com/genostats/LowKi
-https://github.com/skiehl/polarizationtools
-https://github.com/LucIJspeert/star_shadow
-https://github.com/atomneb/AtomNeb-py
-https://github.com/WangLabTHU/DeSP
-https://github.com/backyardworlds/wiseview
-https://github.com/flaminiafortuni/FORECAST
-https://github.com/mh-skjelvareid/synaptus
-https://github.com/ropensci-review-tools/autotest
-https://github.com/DochtermannLab/G-PopComparison
-https://github.com/ImperialCollegeLondon/EpiCollectplus
-https://github.com/ropensci/onekp
-https://github.com/rauschenberger/transreg
-https://github.com/wullm/zwindstroom
-https://github.com/mpound/pdrtpy
-https://github.com/elixir-luxembourg/daisy
-https://github.com/reality/klarigi
-https://github.com/sjbeckett/localcovid19now
-https://github.com/jiffyclub/palettable
-https://github.com/nonlocalmodels/NLMech
-https://github.com/Cristianetaniguti/Reads2Map
-https://github.com/leonzheng2/efficient-butterfly
-https://github.com/ratt-ru/Stimela-classic
-https://github.com/ImproPhoto/pymicmac
-https://github.com/JinxinMonash/PhageGE
-https://github.com/ntoles/tristan-mp-pitp
-https://github.com/hrwakeford/ExoTiC-ISM
-https://github.com/xenon-middleware/xenon
-https://github.com/JuliaHCI/ADI.jl
-https://github.com/jeffdaily/parasail-python
-https://github.com/pavanvidem/chira
-https://github.com/spiketools/spiketools
-https://github.com/HillLab/SomaticSiMu
-https://github.com/ropensci/tinkr
-https://github.com/stevengj/nlopt
-https://github.com/logological/gpp
-https://github.com/oliverphilcox/PolyBin3D
-https://github.com/cole-trapnell-lab/cufflinks
-https://github.com/user29A/JPFITS
-https://github.com/computational-chemical-biology/ChemWalker
-https://github.com/nasa/KeplerPORTs
-https://github.com/mikejohnson51/AHGestimation
-https://github.com/humanfactors/FIPS
-https://github.com/upb-lea/gym-electric-motor
-https://github.com/bwoshea/ZEUS-MP_2
-https://github.com/NLeSC/ExtJS-DateTime
-https://github.com/toshiyan/cmblensplus
-https://github.com/eisascience/HISTA
-https://github.com/nanakiksc/zerone
-https://github.com/uclchem/Chemulator
-https://github.com/SandyYuan/s3PCF
-https://github.com/exoplanet-dev/celerite2
-https://github.com/ropensci/eia
-https://github.com/eWaterCycle/experiment-launcher
-https://github.com/google/best
-https://github.com/cc646201081/CircSI-SSL
-https://github.com/singularityhub/sregistry
-https://github.com/MultiQC/MultiQC
-https://github.com/dirmeier/surjectors
-https://github.com/czbiohub-sf/Rapid-QC-MS
-https://github.com/PaulMcMillan-Astro/GalPot
-https://github.com/jendelel/PrankWebApp
-https://github.com/bradkav/DMRadon
-https://github.com/NLeSC/esibayes
-https://github.com/patrickfuchs/buildH
-https://github.com/NctuICLab/PredCRP
-https://github.com/pmelchior/des-exp-checker
-https://github.com/mikhailklassen/protostellar_evolution
-https://github.com/ropensci/microdemic
-https://github.com/hemanthpruthvi/PyAstroPol
-https://github.com/Computational-NeuroGenetics/deMeta-beta
-https://github.com/smithlabcode/preseq
-https://github.com/MP-Gadget/bigfile
-https://github.com/mpi4jax/mpi4jax
-https://github.com/Ajstros/pyripherals
-https://github.com/fccoelho/epigrass
-https://github.com/ratt-ru/PyMORESANE
-https://github.com/remi-adam/minot
-https://github.com/thieu1995/permetrics
-https://github.com/imcgreer/simqso
-https://github.com/VChristiaens/vcal_sphere
-https://github.com/berczik/phi-GPU-mole
-https://github.com/ydLiu-HIT/deSALT
-https://github.com/ropensci/ijtiff
-https://github.com/zhangrengang/SubPhaser
-https://github.com/williamjameshandley/fgivenx
-https://github.com/valboz/VBBinaryLensing
-https://github.com/fabiopardo/qmap
-https://github.com/Azeret/galIMF
-https://github.com/JCGoran/coffe
-https://github.com/BEAST-Fitting/beast
-https://github.com/ANNACRNN/REBOUND_fragmentation
-https://github.com/FlorianThibord/OptimiR
-https://github.com/ltlancas/walter
-https://github.com/dkoboldt/varscan
-https://github.com/DataBiosphere/wdl-parsers
-https://github.com/ImperialCollegeLondon/sharpy
-https://github.com/DeepRank/pdb2sql
-https://github.com/lutteropp/NetRAX
-https://github.com/pec27/smerfs
-https://github.com/Hoecker-Lab/atligator
-https://github.com/equib/pyEQUIB
-https://github.com/njcuk9999/apero-drs
-https://github.com/metagentools/GraphBin
-https://github.com/sciapp/sampledb
-https://github.com/actris-cloudnet/cloudnetpy
-https://github.com/tony-travis/PIQUE
-https://github.com/luxsrc/gray
-https://github.com/AusSRC/SoFiAX
-https://github.com/guillochon/MOSFiT
-https://github.com/rordenlab/dcm2niix
-https://github.com/xenon-middleware/osmium
-https://github.com/nikhilroxtomar/FANet
-https://github.com/NLeSC/EEG-epilepsy-diagnosis
-https://github.com/seheonoh/baygaud
-https://github.com/wangsiwei2010/FPMVS-CAG
-https://github.com/NREL/G2Aero
-https://github.com/erling6232/imagedata
-https://github.com/yymao/abundancematching
-https://github.com/astroumd/miriad
-https://github.com/neurogenomics/MAGMA_Celltyping
-https://github.com/OSU-BMBL/IDAM
-https://github.com/linqs/psl
-https://github.com/ecological-cities/home2park
-https://github.com/NLeSC/PattyVis
-https://github.com/ClusterMonteCarlo/CMC-COSMIC
-https://github.com/wbalmer/backtrack
-https://github.com/tiberioap/grav_waldo
-https://github.com/annayqho/TheCannon
-https://github.com/DidierMurilloF/FielDHub
-https://github.com/ICESat2-SlideRule/paper
-https://github.com/dnonatar/Sequoia
-https://github.com/EmmanuelSchaan/LaSSI
-https://github.com/jkbonfield/crumble
-https://github.com/patscott/pippi
-https://github.com/rramadeu/AGHmatrix
-https://github.com/mlower/rmnest
-https://github.com/drphilmarshall/HumVI
-https://github.com/ester-project/ester
-https://github.com/oliverphilcox/encore
-https://github.com/christinahedges/contaminante
-https://github.com/wdecoster/nanopack
-https://github.com/vferat/pycrostates
-https://github.com/Bonfanti88/MCMCI
-https://github.com/ropensci/tokenizers
-https://github.com/cdw9bf/CompactGroup
-https://github.com/OP2/PyOP2
-https://github.com/benedictpaten/marginPhase
-https://github.com/JulioHC00/PEPITA
-https://github.com/keckert7/codes
-https://github.com/hasindu2008/slow5tools
-https://github.com/citation-file-format/cffconvert-github-action
-https://github.com/DedalusProject/eigentools
-https://github.com/liamedeiros/ehtplot
-https://github.com/ketch/RK-Opt
-https://github.com/ci-for-research/self-hosted-runners
-https://github.com/pmelchior/shear-stacking
-https://github.com/mriener/gausspyplus
-https://github.com/linneas/condetri
-https://github.com/JLBLine/WODEN
-https://github.com/jpmens/jo
-https://github.com/USEPA/nsink
-https://github.com/artis-mcrt/artis
-https://github.com/justinread/gravsphere
-https://github.com/AstarVienna/Pyckles
-https://github.com/tseemann/barrnap
-https://github.com/WMD-group/Eris
-https://github.com/nickfarrow/GalacticDNSMass
-https://github.com/alstat/ALUES
-https://github.com/zoometh/iconr
-https://github.com/fkeruzore/panco2
-https://github.com/Jonathanfreundlich/CuspCore
-https://github.com/slimgroup/InvertibleNetworks.jl
-https://github.com/EACcodes/TigerCI
-https://github.com/bcgsc/ntHash
-https://github.com/csinva/imodels
-https://github.com/icecube/toise
-https://github.com/AMReX-Astro/Nyx
-https://github.com/yuliang419/Astronet-Vetting
-https://github.com/gpertea/gclib
-https://github.com/BASTAcode/BASTA
-https://github.com/AWehrhahn/SME
-https://github.com/fair-workflows/NanopubJL
-https://github.com/ndaniyar/aphot
-https://github.com/TeamPerie/CellDestiny
-https://github.com/Kushaalkumar-pothula/FLARE
-https://github.com/iain-mcdonald/PySSED
-https://github.com/EOSC-LOFAR/lofar-ld
-https://github.com/ropensci/dbhydroR
-https://github.com/mrempel/geohexviz
-https://github.com/bthorne93/PySM_public
-https://github.com/ELELAB/cancermuts
-https://github.com/biocore/scikit-bio
-https://github.com/chombo-discharge/chombo-discharge
-https://github.com/chenwuperth/rgz_rcnn
-https://github.com/alan-turing-institute/monitoring-ecosystem-resilience
-https://github.com/EskelandLab/ShinyArchRUiO
-https://github.com/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY
-https://github.com/aasensio/sicon
-https://github.com/IonRepo/IonDiff
-https://github.com/INCEPTdk/adaptr
-https://github.com/astropy/astroplan
-https://github.com/barnabytprowe/imcom
-https://github.com/tribshms/tRIBS
-https://github.com/lpantano/seqcluster
-https://github.com/yogi-tud/space_gpu
-https://github.com/marcelauliano/MitoHiFi
-https://github.com/cadop/seg1d
-https://github.com/justyncw/STAR_MELT
-https://github.com/mtholder/ncl
-https://github.com/ropensci/opencontext
-https://github.com/pnsaevik/effluent
-https://github.com/PGB-LIV/MHCVision
-https://github.com/snfactory/binaryoffset
-https://github.com/olivares-j/Kalkayotl
-https://github.com/marschall-lab/panacus
-https://github.com/ropensci/rsnps
-https://github.com/EGaraldi/corecon
-https://github.com/federicomarulli/CosmoBolognaLib
-https://github.com/emrecdem/emo-spectre
-https://github.com/edgardomortiz/Captus
-https://github.com/mjcarley/nbi
-https://github.com/micbia/SubgridClumping
-https://github.com/will-rowe/hulk
-https://github.com/gymreklab/GangSTR
-https://github.com/Ensembl/ensembl-vep
-https://github.com/supernnova/SuperNNova
-https://github.com/tanner-trickle/EXCEED-DM
-https://github.com/exoclime/HELIOS
-https://github.com/mrvollger/fibertools-rs
-https://github.com/jcombs1/blasr
-https://github.com/danielreardon/scintools
-https://github.com/idrugLab/hignn
-https://github.com/FabianPlum/OmniTrax
-https://github.com/mivp/encube
-https://github.com/astrosmili/smili
-https://github.com/vgl-hub/gfastats
-https://github.com/Clinical-Genomics-Umea/fraggler
-https://github.com/jradavenport/FBEYE
-https://github.com/gerddie/maxflow
-https://github.com/barklem/abo-cross
-https://github.com/ghislainv/forestatrisk
-https://github.com/ropensci/ssh
-https://github.com/paucablop/chemotools
-https://github.com/PyFR/PyFR
-https://github.com/rajeshmondal18/FoF-Halo-finder
-https://github.com/facebookresearch/segment-anything
-https://github.com/jgducoin/galclaim
-https://github.com/OttoStruve/muler
-https://github.com/haoharryfeng/NeuCA
-https://github.com/basehc/IPEV
-https://github.com/TBLabFJD/DBofAFs
-https://github.com/votca/xtp
-https://github.com/herrsalmi/FConverter
-https://github.com/nservant/HiC-Pro
-https://github.com/SotaYoshida/NuclearToolkit.jl
-https://github.com/kokron/anzu
-https://github.com/brentp/hts-nim-tools
-https://github.com/NLeSC/ahn-pointcloud-viewer-ws
-https://github.com/rossjturner/RAiSERed
-https://github.com/Shyentist/fish-r-man
-https://github.com/PieterjanRobbe/GaussianRandomFields.jl
-https://github.com/studla/RYUTO
-https://github.com/lwang-astro/SDAR
-https://github.com/astronomyk/SimCADO
-https://github.com/TNOCS/csWeb
-https://github.com/RuthAngus/GProtation
-https://github.com/PeterBartram/TES
-https://github.com/sebastian-zieba/PACMAN
-https://github.com/pierrepeterlongo/back_to_sequences
-https://github.com/opengenomebrowser/opengenomebrowser
-https://github.com/LoganAMorrison/blackthorn
-https://github.com/eabaron/synow
-https://github.com/bhi-kimlab/StressGenePred
-https://github.com/sibirrer/psfr
-https://github.com/baoxingsong/AnchorWave
-https://github.com/miguelcarcamov/gpuvmem
-https://github.com/eelregit/covdisc
-https://github.com/bcgsc/tigmint
-https://github.com/loneknightpy/idba
-https://github.com/ERA-URBAN/fm128_radar
-https://github.com/tomasstolker/ARTES
-https://github.com/COMBINE-lab/terminus
-https://github.com/MIAnalyzer/MIA
-https://github.com/bramvandijk88/cacatoo
-https://github.com/twesterhout/lattice-symmetries
-https://github.com/biomed-AI/GraphBepi
-https://github.com/tbisbas/PDFchem
-https://github.com/gokalpcelik/ROHMMCLI
-https://github.com/baxmittens/VTUFileHandler.jl
-https://github.com/gilestrolab/ethoscope
-https://github.com/mary77/scQcut
-https://github.com/davemlz/eemont
-https://github.com/ijuric/MAPS
-https://github.com/dpryan79/libBigWig
-https://github.com/shenwei356/csvtk
-https://github.com/farhanferoz/SkyNet
-https://github.com/utrillalab/repromin
-https://github.com/oneilsh/tidytensor
-https://github.com/cosmodesi/pycorr
-https://github.com/tinglabs/scAIDE
-https://github.com/scrook/neuroml-db
-https://github.com/glis-glis/loci
-https://github.com/ropensci/hydroscoper
-https://github.com/ejikeugba/serp
-https://github.com/smeingast/PNICER
-https://github.com/vhaasteren/piccard
-https://github.com/nlesc-ave/ave-rest-service
-https://github.com/compomics/COSS
-https://github.com/padster/pyNeuroTrace
-https://github.com/Theano/Theano
-https://github.com/SandoghdarLab/PiSCAT
-https://github.com/wanpinglee/MOSAIK
-https://github.com/engyasin/Offline_MOT
-https://github.com/hz1010/FIPRESCI_data_analysis
-https://github.com/GregoryFaust/samblaster
-https://github.com/bacpop/pp-sketchlib
-https://github.com/CDSP-SCPO/dataverse-feed
-https://github.com/ablab/TandemTools
-https://github.com/eweitz/ideogram
-https://github.com/nanoporetech/dorado
-https://github.com/SJLeo/FFSD
-https://github.com/ropensci/targets
-https://github.com/VIB-PSB/MINI-EX
-https://github.com/sebastien-plutniak/archeoviz
-https://github.com/spacepy/spacepy
-https://github.com/bxlab/bx-python
-https://github.com/wfondrie/mokapot
-https://github.com/oorb/oorb
-https://github.com/interactivereport/OmicsView0
-https://github.com/auckland-cosmo/defrost-mpi
-https://github.com/berenslab/MorphoPy
-https://github.com/ParkerLab/ataqv
-https://github.com/twosixlabs/magicwand-datatool
-https://github.com/zhangzzk/forklens
-https://github.com/kylemede/ExoSOFT
-https://github.com/conda/conda-package-handling
-https://github.com/mathworks/Simscape-Medical-Ventilator
-https://github.com/alejandroaviles/fkpt
-https://github.com/cbg-ethz/PredictHaplo
-https://github.com/getzlab/rnaseqc
-https://github.com/IanHeywood/pony3d
-https://github.com/hungyipu/Odyssey
-https://github.com/yuhuan-wu/MobileSal
-https://github.com/AnantharamanLab/vRhyme
-https://github.com/xmuyulab/DreamDIA-XMBD
-https://github.com/OpenEnergyPlatform/open-MaStR
-https://github.com/atmos-cloud-sim-uj/PySDM
-https://github.com/TheJacksonLaboratory/drug-synergy
-https://github.com/JuliaAI/Imbalance.jl
-https://github.com/sisl/PyroRL
-https://github.com/jfoster17/extinction-distances
-https://github.com/easystats/parameters
-https://github.com/MartianColonist/Cthulhu
-https://github.com/caimeng2/seesus
-https://github.com/rgmyr/corebreakout
-https://github.com/ropensci/rrricanes
-https://github.com/wilkelab/Opfi
-https://github.com/gramos/imagetooth
-https://github.com/cbielow/PTXQC
-https://github.com/danielemelini/ALMA3
-https://github.com/EdwardBerman/shopt
-https://github.com/tmux/tmux
-https://github.com/DLR-RM/BlenderProc
-https://github.com/nespinoza/limb-darkening
-https://github.com/BU-ISCIII/taranis
-https://github.com/seawander/DebrisDiskFM
-https://github.com/ejmackrell/tidyproteomics-interactive
-https://github.com/metageni/FOCUS
-https://github.com/davidharvey1986/pyRRG
-https://github.com/mgieles/limepy
-https://github.com/husonlab/megan-ce
-https://github.com/3D-e-Chem/knime-python-wrapper
-https://github.com/sevenstarknight/OCDetector
-https://github.com/ropensci/wikitaxa
-https://github.com/churchmanlab/genewalk
-https://github.com/msailer1234/JWST_Simulation
-https://github.com/wesleyburr/subMaldi
-https://github.com/mdruett/COCOPLOT
-https://github.com/yqiuu/starduster
-https://github.com/liniguez/Insplico_simulations
-https://github.com/swagnercarena/ovejero
-https://github.com/AbbasAlameer/geoCancerPrognosticDatasetsRetriever
-https://github.com/nathanaelbosch/ProbNumDiffEq.jl
-https://github.com/bradkav/verne
-https://github.com/jdhenshaw/acorns
-https://github.com/Materials-Consortia/OPTIMADE-Filter
-https://github.com/ericfell/rfbzero
-https://github.com/MIT-STARLab/deconfuser
-https://github.com/SciML/GlobalSensitivity.jl
-https://github.com/gt1/bambamc
-https://github.com/AngusWright/LAMBDAR
-https://github.com/denglab/SeqSero
-https://github.com/ropensci/rfisheries
-https://github.com/TRI-AMDD/GMP-featurizer
-https://github.com/jstjohn/SeqPrep
-https://github.com/grant-m-s/AstronomicAL
-https://github.com/SysBioUAB/hpi_predictor
-https://github.com/YuLab-SMU/treeio
-https://github.com/chianti-atomic/ChiantiPy
-https://github.com/ahmedmoustafa/JAligner
-https://github.com/cy-xu/cosmic-conn
-https://github.com/bacpop/PopPUNK
-https://github.com/dmnfarrell/snpgenie
-https://github.com/pyomeca/ezc3d
-https://github.com/UBC-Astrophysics/kd-match
-https://github.com/ropensci/predictNMB
-https://github.com/Starlink/hds-v5
-https://github.com/MonashSmartStructures/ospgrillage
-https://github.com/agurvich/FIRE_studio
-https://github.com/AlexanderBartholomaeus/smORFer
-https://github.com/rust-bio/rust-bio-tools
-https://github.com/CPM-project/MCPM
-https://github.com/etempel/Bisous
-https://github.com/LBC-LNBio/pyKVFinder
-https://github.com/ropensci/rvertnet
-https://github.com/mj-will/nessai
-https://github.com/forceflow1049/PhAst
-https://github.com/kinnala/scikit-fem
-https://github.com/tlancian/bio_cs
-https://github.com/ParkvilleData/MetaGenePipe
-https://github.com/brandonckelly/carma_pack
-https://github.com/OpenDA-Association/OpenDA
-https://github.com/phac-nml/biohansel
-https://github.com/achael/eht-imaging
-https://github.com/ropensci/osmapiR
-https://github.com/barklem/mswavef
-https://github.com/Julian/jsonschema
+https://github.com/nickfarrow/GalacticDNSMass
+https://github.com/amueller/word_cloud
+https://github.com/BoPeng/simuPOP
+https://github.com/tonhingm/PHOTOe-v1
+https://github.com/wdecoster/NanoPlot
+https://github.com/BGPS/distance-omnibus
+https://github.com/esa/NIDN
+https://github.com/3D-e-Chem/knime-plants
+https://github.com/AnkitBarik/planetMagFields
+https://github.com/FergusDonnan/PyROA
+https://github.com/RavenGan/GR2D2
+https://github.com/mpi4py/shmem4py
+https://github.com/chainsawriot/oolong
+https://github.com/ropensci/aorsf
+https://github.com/alessiospuriomancini/cosmopower
+https://github.com/astropy/halotools
+https://github.com/Zafiirah13/meercrab
+https://github.com/bxlab/metaWRAP
+https://github.com/idrugLab/hignn
+https://github.com/ImperialCollegeLondon/EpiCollectplus
+https://github.com/ropensci/cRegulome
+https://github.com/MikeHeiber/Excimontec
+https://github.com/PolymerGuy/recolo
+https://github.com/cbirdferrer/collatrix
+https://github.com/FreBio/komics
+https://github.com/ropensci/git2rdata
+https://github.com/basp-group/SARA-dimensionality-reduction
+https://github.com/IanHeywood/pony3d
+https://github.com/HAWinther/MG-PICOLA-PUBLIC
+https://github.com/pysersic/pysersic
+https://github.com/natir/vcf2parquet
+https://github.com/taxprofiler/taxpasta
+https://github.com/akinremisa/rfsed
+https://github.com/exoclime/HELIOS
+https://github.com/Via-Appia/via-appia-online-viewer
+https://github.com/mrvollger/fibertools-rs
+https://github.com/bd-j/sedpy
+https://github.com/dib-lab/dammit
+https://github.com/christopher-vollmers/C3POa
+https://github.com/SuLab/Wikidata-phenomizer
 https://github.com/dgbowl/yadg
-https://github.com/COSIMA/regional-mom6
-https://github.com/rinikerlab/Ensembler
-https://github.com/francescoa97outlook/pyExoRaMa
-https://github.com/rcarragh/c212
-https://github.com/ReGIS-org/regis-v2
-https://github.com/ropensci/treestartr
-https://github.com/linksmart/thing-directory
-https://github.com/vcflib/vcflib
-https://github.com/sxs-collaboration/gwsurrogate
-https://github.com/ekiefl/pooltool
-https://github.com/openneuropet/PET2BIDS
-https://github.com/caseyjlaw/tpipe
-https://github.com/spacetelescope/hst_cosmic_rays
-https://github.com/ajeldorado/falco-python
-https://github.com/21cmfast/21cmEMU
-https://github.com/hytrac/amber
-https://github.com/aertslab/pySCENIC
-https://github.com/palumbom/GRASS
-https://github.com/blebon/directChillFoam
-https://github.com/CNES/EleFits
-https://github.com/jradavenport/appaloosa
-https://github.com/CosmoStatGW/MGCosmoPop
-https://github.com/dwkim78/pdtrend
-https://github.com/pyFFTW/pyFFTW
-https://github.com/davtsang/slimplectic
-https://github.com/opnavlab/sonic
-https://github.com/Bahler-Lab/pyphe
-https://github.com/AFD-Illinois/ebhlight
-https://github.com/GRTLCollaboration/GRDzhadzha
-https://github.com/cgarraffo/StelNet
-https://github.com/thegenemyers/DAMAPPER
-https://github.com/abatten/fruitbat
-https://github.com/tupui/scipy
-https://github.com/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report
-https://github.com/annehutter/polyspectrum
-https://github.com/coljac/sensie
-https://github.com/ropensci/nlrx
-https://github.com/auckland-cosmo/interp-mc
-https://github.com/villrv/SuperRAENN
-https://github.com/kavir1698/EvoDynamics.jl
-https://github.com/astrostat/LIRA
-https://github.com/alex-b-davis/gubas
-https://github.com/ifilot/edp
-https://github.com/mrc-ide/odin
-https://github.com/rhenanbartels/hrv
-https://github.com/ropensci/riem
-https://github.com/KerryAM-R/ggVolcanoR
-https://github.com/lsds/SEEP
-https://github.com/rfeldmann/leopy
-https://github.com/a-renzini/pygwb
-https://github.com/JianjunTan-Beijing/LPI-CSFFR
-https://github.com/ThibaultFillion/strengths
-https://github.com/range-et/PGL
-https://github.com/DirectDM/directdm-mma
-https://github.com/DEIB-GECO/genereg
-https://github.com/dstndstn/tractor
-https://github.com/cdalvaro/machine-learning-master-thesis
-https://github.com/barahona-research-group/hcga
-https://github.com/ismaelpessa/PyMUSE
-https://github.com/skiehl/lcsim
-https://github.com/ixkael/Delight
-https://github.com/devanshkv/fetch
-https://github.com/RJArthern/WAVI.jl
-https://github.com/ropensci/rredlist
-https://github.com/chanzuckerberg/shasta
-https://github.com/villano-lab/nrCascadeSim
-https://github.com/vpc-ccg/genion
-https://github.com/rhyspoulton/WhereWolf
-https://github.com/najoshi/sickle
-https://github.com/aztekas-code/aztekas-main
-https://github.com/wmglab-duke/ascent
-https://github.com/WGLab/LongGF
-https://github.com/ruta-k/uGMRT-pipeline
-https://github.com/vicruiser/3Dmapper
-https://github.com/glasgowlab/MAGPIE
-https://github.com/arnauqb/Qwind.jl
-https://github.com/jbytecode/JMcDM
-https://github.com/pynbody/pynbody
-https://github.com/evolbioinfo/goalign
-https://github.com/kusmic/pycosie
-https://github.com/thachnguyen/CRISPRnano
+https://github.com/kboone/avocado
+https://github.com/deepmind/alphafold
+https://github.com/lanl/CosmicEmu
+https://github.com/storyofthewolf/ExoRT
+https://github.com/ben-cassese/squishyplanet
+https://github.com/mwaskom/seaborn
+https://github.com/PacificBiosciences/kineticsTools
+https://github.com/pytoolz/toolz
+https://github.com/rychallener/theresa
+https://github.com/daler/gffutils
+https://github.com/thomas0809/MolScribe
+https://github.com/COMBINE-lab/pufferfish
+https://github.com/pyro-kinetics/pyrokinetics
+https://github.com/tzhu-bio/UMI-ATAC-seq
+https://github.com/gmbrandt/xwavecal
+https://github.com/BIMSBbioinfo/pigx_rnaseq
+https://github.com/3D-e-Chem/knime-sstea
+https://github.com/brentp/vcfanno
+https://github.com/fenderglass/Flye
+https://github.com/abelson-lab/smMIP-tools
+https://github.com/vdemichev/DiaNN
+https://github.com/kinnala/scikit-fem
 https://github.com/davidpagnon/Sports2D
-https://github.com/rvaser/sword
-https://github.com/HARMONI-ELT/HSIM
-https://github.com/gheald/rmclean
-https://github.com/ratschlab/metagraph
-https://github.com/cbib/decontaminator
-https://github.com/RasmussenLab/vamb
-https://github.com/kuenzelab/ENDURE
-https://github.com/Jacks0nJ/PyFPT
-https://github.com/lasseignelab/CINmetrics
-https://github.com/hannorein/rebound
-https://github.com/asmusskar/ALVA
-https://github.com/fermisurfaces/IFermi
-https://github.com/cameronliang/bayesvp
-https://github.com/RosettaCommons/RoseTTAFold
-https://github.com/ngbusca/QuasarNET
-https://github.com/shikhar249/OnionMHC
-https://github.com/vavrines/Kinetic.jl
-https://github.com/lamyj/odil
+https://github.com/patscott/pippi
 https://github.com/AlexMikes/AutoFunc
-https://github.com/pmaxted/pycheops
-https://github.com/CodeEagle22/SIRITVIS
-https://github.com/PacificBiosciences/bam2fastx
-https://github.com/firedrakeproject/gusto
-https://github.com/PacificBiosciences/FALCON
-https://github.com/epi2me-labs/mapula
-https://github.com/soedinglab/hh-suite
-https://github.com/TinkerTools/tinker-hp
-https://github.com/geodynamics/burnman
-https://github.com/astro-informatics/QuantifAI
-https://github.com/raufs/skDER
-https://github.com/james-m-osborn/astrosat
-https://github.com/evanoconnor/GR1D
-https://github.com/online-behaviour/find-journalists
-https://github.com/ejeschke/ginga
-https://github.com/Qiskit-Extensions/qiskit-dynamics
-https://github.com/YeoLab/clipper
-https://github.com/herjy/SLIT
-https://github.com/champsproject/ldds
-https://github.com/surhudm/savitzky_golay_with_errors
-https://github.com/asgr/NFWdist
-https://github.com/umbralcalc/foxi
-https://github.com/V-Bernal/GeneNetTools
-https://github.com/astropy/specutils
-https://github.com/brentp/geneimpacts
-https://github.com/AlexMaraio/WeakLensingQML
-https://github.com/franpoz/SHERLOCK
-https://github.com/ropensci/censo2017
-https://github.com/ERA-URBAN/wrfpy
-https://github.com/joshuakt/Oxygen-False-Positives
-https://github.com/Pithikos/C-Thread-Pool
-https://github.com/marseille-proteomique/DIAgui
-https://github.com/bharathramh/STRIDE-DB_Codes
-https://github.com/SimCab-CHU/ifCNV-R
-https://github.com/GWang2022/iGDP
-https://github.com/mbonav/Exo_DMC
-https://github.com/evolbioinfo/bdei
-https://github.com/pavolgaj/ObsPlanner
-https://github.com/rajeshrinet/pystokes
-https://github.com/LSSTDESC/NaMaster
-https://github.com/spacetx/starfish
-https://github.com/svi-opensource/libics
-https://github.com/jdhenshaw/scousepy
-https://github.com/Samreay/Marz
-https://github.com/citation-file-format/citation-file-format
-https://github.com/jacobblum/simDRIFT
-https://github.com/julianreul/mode_behave
-https://github.com/drupke/questfit
-https://github.com/asntech/intervene
-https://github.com/ropensci/dittodb
-https://github.com/tkchafin/autostreamtree
-https://github.com/galkintool/galkin
-https://github.com/christopherburke/tess-point
-https://github.com/genner-lab/meta-fish-lib
-https://github.com/robynlm/ICPertFLRW
-https://github.com/pkugyf/MST
-https://github.com/ropensci/daiquiri
-https://github.com/1054/Crab.Toolkit.michi2
-https://github.com/Crompulence/cpl-library
+https://github.com/Lbalkenhol/candl
+https://github.com/heuermh/dishevelled-bio
+https://github.com/dartoon/galight
+https://github.com/gnave/pybranch
+https://github.com/pynbody/tangos
+https://github.com/ebellm/pyraf-dbsp
+https://github.com/jeffdaily/parasail
+https://github.com/calboo/TAWAS
+https://github.com/martinjameswhite/directsht
+https://github.com/spacetelescope/specview
+https://github.com/rajewsky-lab/dropbead
+https://github.com/NLeSC/boatswain
+https://github.com/icredd-cheminfo/CGRdb2
+https://github.com/el2718/FastQSL
+https://github.com/bjmt/universalmotif
+https://github.com/sonny-harman/snowball
+https://github.com/matteobreschi/bajes
+https://github.com/ronshnapp/MyPTV
+https://github.com/lemene/PECAT
+https://github.com/gsuissa/hardCORE
+https://github.com/t-brandt/orvara
+https://github.com/christinahedges/contaminante
+https://github.com/PacificBiosciences/IsoSeq
+https://github.com/sibirrer/lenstronomy
+https://github.com/RJArthern/WAVI.jl
+https://github.com/ropensci/tidyhydat
+https://github.com/mrbell/fsclean
+https://github.com/NREL/graph-env
+https://github.com/smsharma/fermi-gce-flows
+https://github.com/a-griffiths/AutoSpec
+https://github.com/greendw/AntabGMVA
+https://github.com/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection
+https://github.com/gpertea/cdbfasta
+https://github.com/aomlomics/tourmaline
+https://github.com/AndreaCaldiroli/ATES-Code
+https://github.com/aboucaud/pypher
+https://github.com/kuanrongchan/COVID19-severity
+https://github.com/rdpstaff/TaxonomyTree
+https://github.com/qboxcode/qbox-public
+https://github.com/astro-informatics/harmonic
+https://github.com/linneas/condetri
+https://github.com/xuanxu/starmatrix
+https://github.com/fchuffar/epimedtools
+https://github.com/jonathansick/skyoffset
+https://github.com/ropensci/jenkins
+https://github.com/EcoJulia/EcologicalNetworks.jl
+https://github.com/jlenain/flaapluc
+https://github.com/lucaborsato/trades
+https://github.com/exafmm/exafmm-t
+https://github.com/sbailey/empca
+https://github.com/DEIB-GECO/MutViz
+https://github.com/CyclotronResearchCentre/bidsme
+https://github.com/nitadori/SCF-FDPS
+https://github.com/Punzo/SlicerAstro
+https://github.com/brunettsp/myosothes
+https://github.com/tikk3r/legacystamps
+https://github.com/bcgsc/tigmint
+https://github.com/Ashod/garli
+https://github.com/TimothyADavis/GAStimator
+https://github.com/ropensci/rerddap
+https://github.com/COMBINE-lab/libgff
+https://github.com/plazar/coast_guard
+https://github.com/IndrajeetPatil/statsExpressions
+https://github.com/ebachelet/pyLIMA
+https://github.com/VALENCE-software/VALENCE
+https://github.com/parkus/scicatalog
+https://github.com/szhorvat/IGraphM
+https://github.com/ch-var/SMART
+https://github.com/xfengnefx/hifiasm-meta
+https://github.com/pcingola/SnpEff
+https://github.com/PanKonstantinos/MEvA-X
+https://github.com/bradkav/NbodyIMRI
+https://github.com/WatsonLab/MAGpy
+https://github.com/markur4/plotastic
+https://github.com/tensorly/viz
 https://github.com/patscott/DDCalc
-https://github.com/pedronachtigall/ToxCodAn-Genome
-https://github.com/eWaterCycle/setup-singularity
-https://github.com/mlares/hearsay
-https://github.com/joacoh/wise2mbh
-https://github.com/Bioinformatics-Munich/scas_dashboard
-https://github.com/hsinnan75/GSAlign
-https://github.com/WMD-group/CarrierCapture.jl
-https://github.com/MillionConcepts/lhorizon
-https://github.com/chrishales/pieflag
-https://github.com/TianlaiProject/tlpipe
-https://github.com/RenneLab/hybkit
-https://github.com/tobiasrausch/wally
-https://github.com/TriPed-Robot/trip_kinematics
-https://github.com/alphapsa/PIPE
-https://github.com/dmilakovic/QSOSIM10
-https://github.com/GOMC-WSU/GOMC
-https://github.com/kartheikiyer/dense_basis
-https://github.com/ropensci/restez
-https://github.com/stevenweaver/seqcomplexity
+https://github.com/saezlab/PHONEMeS
+https://github.com/surf-eds/one-button-compute
+https://github.com/David-McKenna/udpPacketManager
+https://github.com/alexander-mead/pyhalomodel
+https://github.com/neuroanatomy/reorient
+https://github.com/cosmo-ethz/hide
+https://github.com/EGaraldi/corecon
+https://github.com/RichardMoot/GrailLight
+https://github.com/pinellolab/STREAM
+https://github.com/dfm/ketu
+https://github.com/hippke/tls
+https://github.com/cdanielmachado/carveme
+https://github.com/nexml/nexml.java
+https://github.com/fakedrtom/oncogemini
+https://github.com/EvolBioInf/andi
+https://github.com/ratt-ru/Stimela
+https://github.com/labsquare/CutePeaks
 https://github.com/Kamuish/archi
-https://github.com/MAnalytics/opitools
-https://github.com/dfki-ric-underactuated-lab/torque_limited_simple_pendulum
-https://github.com/introlab/opentera
-https://github.com/rribeiro-sci/pygomodo
-https://github.com/CHRF-Genomics/Paratype
-https://github.com/NLeSC/case-law-app
-https://github.com/SwissClinicalTrialOrganisation/secuTrialR
-https://github.com/ropensci/chirps
-https://github.com/tvwenger/kd
-https://github.com/ComtekAdvancedStructures/cmstatr
-https://github.com/nevrome/bleiglas
-https://github.com/lczech/gappa
-https://github.com/ropensci/opentripplanner
-https://github.com/tvwenger/tmbidl
-https://github.com/mrc-ide/covid19-forecasts-orderly
-https://github.com/tvwenger/HII-Region-Models
-https://github.com/korcsmarosgroup/TFlink
-https://github.com/argiopetech/base
-https://github.com/asgr/celestial
-https://github.com/rajewsky-lab/dropbead
-https://github.com/open2c/pairtools
-https://github.com/AA-ALERT/AMBER
-https://github.com/VeinsOfTheEarth/rabpro
-https://github.com/vsoch/citelang
-https://github.com/FergusDonnan/PAHDecomp
-https://github.com/jpcoles/glass
-https://github.com/cusbg/traveler
-https://github.com/HannahMDoherty/ChemGAPP
-https://github.com/silburt/DeepMoon
-https://github.com/RavenGan/GR2D2
-https://github.com/uwssg/APS
-https://github.com/UgoLomoio/gtex_visualizer
-https://github.com/deweylab/RSEM
-https://github.com/mattpitkin/psrqpy
-https://github.com/sjteresi/TE_Density
-https://github.com/ropensci/Rpolyhedra
-https://github.com/pirl-unc/ace
-https://github.com/bempp/bempp-cl
-https://github.com/alexdobin/STAR
-https://github.com/ropensci/phylotaR
-https://github.com/Samreay/Barry
-https://github.com/spectralcode/OCTproZ
 https://github.com/calboo/Wigglewave
-https://github.com/Circuitscape/Omniscape.jl
-https://github.com/landlab/landlab
+https://github.com/fastpm/fastpm
+https://github.com/fkeruzore/panco2
+https://github.com/pencil-code/pencil-code
+https://github.com/CompGenomeLab/boquila
+https://github.com/gagneurlab/drop
+https://github.com/vergauwenthomas/MetObs_toolkit
+https://github.com/bfarr/exocartographer
+https://github.com/PhaseTracer/PhaseTracer
+https://github.com/hsinnan75/GSAlign
+https://github.com/koszullab/pareidolia
+https://github.com/tupui/scipy
+https://github.com/timchurches/NetEpi-Analysis
+https://github.com/OncoRNALab/CiLiQuant
+https://github.com/kdm9/libqes
+https://github.com/radicamc/exoTEDRF
+https://github.com/sPaMFouR/RedPipe
+https://github.com/ksahlin/strobealign
+https://github.com/snad-space/zwad
+https://github.com/Ajstros/pyripherals
+https://github.com/deezer/spleeter
+https://github.com/kmsurrao/reMASTERed
+https://github.com/calboo/Potential_Field_Calculator
+https://github.com/dsoave/JLS
+https://github.com/YeoLab/FLARE
+https://github.com/fabian-sp/GGLasso
+https://github.com/kehrlab/PopDel
+https://github.com/Muhammad-Arif-NUST/BVP_Pred_Unb
+https://github.com/nespinoza/exonailer
+https://github.com/fpavogt/fcmaker
+https://github.com/michaelhb/superplot
+https://github.com/milnus/Corekaburra
+https://github.com/alan-turing-institute/Palaeoanalytics
+https://github.com/cbg-ethz/shorah
+https://github.com/AFD-Illinois/grim
+https://github.com/mswzeus/TargetNet
+https://github.com/3d-pli/fastpli
+https://github.com/HajimeKawahara/sot
+https://github.com/ropensci/conditionz
+https://github.com/TimothyADavis/KinMSpy
+https://github.com/spacetelescope/pystortion
+https://github.com/bblodfon/emba
+https://github.com/rhenanbartels/hrv
+https://github.com/mbaes/SpheCow
+https://github.com/ChileanVirtualObservatory/indexing_utfsm
+https://github.com/basp-group/sopt
+https://github.com/scotthgn/RELAGN
+https://github.com/uw-comphys/opencmp
+https://github.com/ropensci/censo2017
+https://github.com/drwaseemsheikh/audiometry
+https://github.com/biomedia-mira/masf
+https://github.com/petigura/terra
+https://github.com/javicarron/mtneedlet
+https://github.com/zgazak/TAP
+https://github.com/PaulSt/NGSTrefftz
+https://github.com/Acellera/htmd
+https://github.com/synchrofit/synchrofit
+https://github.com/c-martinez/BeyondTheBook
+https://github.com/weizhongli/cdhit
+https://github.com/nlesc-dirac/sagecal
+https://github.com/LiShuTJ/NDNet
+https://github.com/ropensci/handlr
+https://github.com/thomasorb/orcs
+https://github.com/cconroy20/alf
+https://github.com/anuwu/GOTHIC
+https://github.com/vpc-ccg/svict
+https://github.com/timothydmorton/VESPA
+https://github.com/MehrnooshTahani/MappingBLOS_MolecularClouds
+https://github.com/conda/pycosat
+https://github.com/pyvisa/pyvisa
+https://github.com/SeaIce-Math/SubZero
+https://github.com/ebundhoo/TAGOPSIN
+https://github.com/mirochaj/sedop
+https://github.com/facom/BHMcalc
+https://github.com/potree/PotreeConverter
+https://github.com/puregome/notebooks
+https://github.com/martinlackner/abcvoting
+https://github.com/PDB-REDO/tortoize
+https://github.com/stedolan/jq
+https://github.com/pfaucon/PBSIM-PacBio-Simulator
+https://github.com/difuture-lmu/dsBinVal
+https://github.com/milnus/Magphi
+https://github.com/HITS-AIN/PINK
+https://github.com/napakalas/casbert
+https://github.com/bigraph-toolkit-suite/bigraphs.grgen-bigraphs
+https://github.com/soilwater/crnpy
+https://github.com/mlarichardson/CosmosCanvas
+https://github.com/ropensci/weatherOz
+https://github.com/carpyncho/carpyncho-py
+https://github.com/matthewholman/assist
+https://github.com/CGAL/cgal
+https://github.com/Gabaldonlab/perSVade
+https://github.com/schochastics/netrankr
+https://github.com/JeffLCoughlin/EphemMatch
+https://github.com/smaret/astrochem
+https://github.com/mofanv/darknetz
+https://github.com/ropensci/textreuse
+https://github.com/sciapp/sampledb
+https://github.com/Keck-DataReductionPipelines/MosfireDRP
+https://github.com/XuhanLiu/DrugEx
+https://github.com/YangLab/CIRCexplorer2
+https://github.com/wangjun1996/VisFeature
+https://github.com/martenlourens/SHARC
+https://github.com/ArkajyotiSaha/RandomForestsGLS
+https://github.com/lahovniktadej/gatree
+https://github.com/alexriss/SpmImageTycoon.jl
+https://github.com/pmvreeswijk/BlackBOX
+https://github.com/sanger-pathogens/snp-sites
+https://github.com/yuliang419/Astronet-Vetting
+https://github.com/eWaterCycle/Cesium-NcWMS
+https://github.com/mrtommyb/ktransit
+https://github.com/ratt-ru/solarkat
+https://github.com/phac-nml/sistr_cmd
+https://github.com/gtayana/CVRMS
+https://github.com/vallis/mc3pta
+https://github.com/oliverphilcox/HIPSTER
+https://github.com/BigDataBiology/argNorm
+https://github.com/zpliulab/GeoBind
+https://github.com/migueldvb/cine
+https://github.com/li-shaochuan/SEDIM
+https://github.com/wesleyburr/subMaldi
+https://github.com/AIgnesti/PT-REX
+https://github.com/ratt-ru/CubiCal
+https://github.com/vbakis/mrs
+https://github.com/JiangYuTS/FacetClumps
+https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Objects
+https://github.com/tgrimes/SeqNet
+https://github.com/3D-e-Chem/3D-e-Chem-VM
+https://github.com/BrianAronson/birankr
+https://github.com/mrc-ide/dde
+https://github.com/mrvollger/rustybam
+https://github.com/bengeof/QPoweredCompound2DeNovoDrugPropMax
+https://github.com/moscibrodzka/ipole
+https://github.com/tcollett/LensPop
+https://github.com/desihub/desitarget
+https://github.com/rice-solar-physics/EBTEL
+https://github.com/IMMM-SFA/statemodify
+https://github.com/riatelab/osrm
+https://github.com/SMTG-Bham/ThermoParser
+https://github.com/WMD-group/hybrid-perovskites
+https://github.com/taehoryu/TDEmass
+https://github.com/ESMValGroup/ESMValCore
+https://github.com/rabrahm/ceres
+https://github.com/CosmoStat/nicaea
+https://github.com/thomasdenecker/START-R
+https://github.com/dpryan79/MethylDackel
+https://github.com/HAWinther/FML
+https://github.com/labxscut/ksak
+https://github.com/deepskies/deeplenstronomy
+https://github.com/jakevdp/wpca
+https://github.com/kgullikson88/Companion-Finder
+https://github.com/DrDaveShaw/INCHEM-Py
+https://github.com/yuguangchen1/KcwiKit
+https://github.com/gperezs/StarcNet
+https://github.com/kokron/skyLine
+https://github.com/DamCB/tyssue
+https://github.com/aalhossary/pyemgpipeline
+https://github.com/cpinte/pymcfost
+https://github.com/fair-software/howfairis
+https://github.com/SERVIR/servir-aces
+https://github.com/pelahi/TreeFrog
+https://github.com/aasensio/hazel
+https://github.com/goualard-f/MicroFloatingPoints.jl
+https://github.com/JanLeppert/GasChromatographySimulator.jl
+https://github.com/sachsmc/cosinor
+https://github.com/eScatter/pyelsepa
+https://github.com/natashabatalha/PandExo
+https://github.com/mc-imperial/jfs
+https://github.com/vincentvaneylen/k2photometry
+https://github.com/lucabaldini/ixpeobssim
+https://github.com/arq5x/lumpy-sv
+https://github.com/JoschaJ/mockFRBhosts
+https://github.com/nbellomo/Multi_CLASS
+https://github.com/nabeelre/NIMBLE
+https://github.com/bcbio/bcbio.variation.recall
+https://github.com/bmorris3/fleck
+https://github.com/egpbos/barcode
+https://github.com/alexfields/ORF-RATER
+https://github.com/carnotresearch/cr-sparse
+https://github.com/PacificBiosciences/pbbioconda
+https://github.com/sheneman/clearcut
+https://github.com/NLeSC/eEcology-Annotation-WS
+https://github.com/akikuno/cstag
+https://github.com/NLeSC/fairdatapoint
+https://github.com/pixixiaonaogou/MLSDR
+https://github.com/zengzhenhuan/GFNet
+https://github.com/ropensci/Rclean
+https://github.com/wmglab-duke/ascent
+https://github.com/matthias-mayr/Cartesian-Impedance-Controller
+https://github.com/jspsych/jsPsych
+https://github.com/LBC-LNBio/pyKVFinder
+https://github.com/huiwenke/MineProt
+https://github.com/WGLab/LongGF
+https://github.com/ropensci/rtika
+https://github.com/epfl-radio-astro/PINION
+https://github.com/jan-rybizki/Galaxia_wrap
+https://github.com/fjdu/myRadex
+https://github.com/spiketools/spiketools
+https://github.com/HillLab/SomaticSiMu
+https://github.com/ci-for-research/self-hosted-runners
+https://github.com/rmjarvis/TreeCorr
+https://github.com/pyomeca/ezc3d
+https://github.com/basp-group/purify
+https://github.com/Magritte-code/Magritte
+https://github.com/zoometh/iconr
+https://github.com/ropensci/USAboundaries
+https://github.com/mpip/pfft
+https://github.com/mcfrith/tandem-genotypes
+https://github.com/rizkg/BBHash
+https://github.com/ketch/nodepy
+https://github.com/optimusmoose/jsms
+https://github.com/ropensci/rvertnet
+https://github.com/sverhoeven/docker-cartodb
+https://github.com/champsproject/ldds
+https://github.com/sevimcengiz/Oryx-MRSI
+https://github.com/phil-mansfield/gotetra
+https://github.com/BaroudLab/Griottes
+https://github.com/lanl/GLUE
+https://github.com/fzi-forschungszentrum-informatik/TSInterpret
+https://github.com/cameron314/concurrentqueue
+https://github.com/rhysf/HaplotypeTools
+https://github.com/wilsonrljr/sysidentpy
+https://github.com/nanoporetech/tombo
+https://github.com/hpparvi/PyTransit
+https://github.com/jmd-dk/concept
+https://github.com/logological/gpp
+https://github.com/onnela-lab/beiwe-backend
+https://github.com/e-mental-health/data-processing
+https://github.com/jbuisine/macop
+https://github.com/odelaneau/GLIMPSE
+https://github.com/opengeos/HyperCoast
+https://github.com/Pinlyu3/LRLoop
+https://github.com/ywx649999311/vizic
+https://github.com/JustinYKC/FEPOPS
+https://github.com/floodlight-sports/floodlight
+https://github.com/cicirello/Chips-n-Salsa
+https://github.com/ropensci/phylogram
+https://github.com/oschwengers/platon
+https://github.com/ropensci/rfema
+https://github.com/amiralih/MembraneAnalysis.jl
 https://github.com/SpectraCollab/ORMIR_XCT
-https://github.com/grburgess/popsynth
-https://github.com/korcsmarosgroup/CytokineLink
-https://github.com/jellis18/PTMCMCSampler
-https://github.com/samaygarg/fuelcell
-https://github.com/mzemp/halogen
-https://github.com/temuller/hostphot
-https://github.com/vipinagrawal25/MeMC
-https://github.com/gmrandazzo/libscientific
-https://github.com/bblodfon/emba
-https://github.com/mjacob1002/Eir
-https://github.com/cespinosa/pyHIIexplorerV2
-https://github.com/teoxxx/rlos
-https://github.com/nextgenusfs/funannotate
-https://github.com/swiftbiosciences/primerclip
-https://github.com/ropensci/datapack
-https://github.com/manodeep/Corrfunc
-https://github.com/ropensci/rfigshare
-https://github.com/easystats/correlation
-https://github.com/bcbio/bcbio-nextgen
-https://github.com/lofar-astron/DP3
-https://github.com/kmsurrao/reMASTERed
-https://github.com/GabrieleParimbelli/COLIBRI
-https://github.com/regonzar/paravt
+https://github.com/bmoster/emerge
+https://github.com/rhyspoulton/WhereWolf
+https://github.com/jcorbino/mole
+https://github.com/baker-laboratory/RoseTTAFold-All-Atom
 https://github.com/jpierel14/snsed
-https://github.com/ropensci/parzer
-https://github.com/krober10nd/SeismicMesh
-https://github.com/hposborn/MonoTools
-https://github.com/pengweixing/FACT
-https://github.com/ICRAR/libprofit
-https://github.com/mwhosek/extlaw_H18
-https://github.com/keflavich/HiGal_SEDfitter
-https://github.com/jfarek/alignstats
-https://github.com/davidpamos/MultiModes
-https://github.com/suneeshjacob/ACRoD
-https://github.com/amoradinejad/limHaloPT
-https://github.com/Rocsg/FijiRelax
+https://github.com/SofieVG/FlowSOM
+https://github.com/tvwenger/WISP
+https://github.com/ropensci/smapr
+https://github.com/tool-bin/ukbcc
+https://github.com/discsim/frank
+https://github.com/wbalmer/backtrack
+https://github.com/molscat/molscat
+https://github.com/agombolay/ribose-map
+https://github.com/henrysky/astroNN
+https://github.com/koenderks/jaspAudit
+https://github.com/phillippro/agatha
+https://github.com/FDPS/FDPS
+https://github.com/hallamlab/TreeSAPP
+https://github.com/actris-cloudnet/mwrpy
+https://github.com/UncertainLab/Enlsip.jl
+https://github.com/ginolhac/mapDamage
+https://github.com/alstat/ALUES
+https://github.com/zonca/dst
 https://github.com/podondra/eidein
-https://github.com/agerada/AIgarMIC
-https://github.com/pmelchior/pygmmis
-https://github.com/samtools/bcftools
-https://github.com/dwkim78/ASTRiDE
-https://github.com/KBNLresearch/ochre
-https://github.com/pinellolab/CRISPRitz
-https://github.com/davek44/Glimmer-MG
-https://github.com/saeyslab/nichenetr
-https://github.com/Gaius-Augustus/Tiberius
-https://github.com/keurfonluu/toughio
-https://github.com/etiennepayet/nti
-https://github.com/Gaiana/nirdust
-https://github.com/CSB5/lofreq
-https://github.com/HHTpy/HHTpywrapper
-https://github.com/niemasd/CoaTran
-https://github.com/medvedevgroup/TwoPaCo
-https://github.com/lsds/Neptune
-https://github.com/pkestene/xsmurf
-https://github.com/oliverphilcox/PolyBin
-https://github.com/tanhevg/GpABC.jl
-https://github.com/sonoUnoTeam/sonoUno-desktop
-https://github.com/ropensci/rb3
-https://github.com/sonny-harman/snowball
-https://github.com/maxibor/sam2lca
-https://github.com/skendrew/milkywayproject_triggering
-https://github.com/babelomics/impuSARS
-https://github.com/jdeast/EXOFASTv2
-https://github.com/JasonYangShadow/lpmx
-https://github.com/biocore-ntnu/ncls
-https://github.com/dsheward-astro/PyNAPLE
-https://github.com/scotthgn/RELAGN
-https://github.com/MartianColonist/POSEIDON
-https://github.com/rqtl/qtl2
-https://github.com/lzx325/DeeReCT-APA-repo
-https://github.com/KeplerGO/k2mosaic
-https://github.com/martin3141/spant
+https://github.com/d-tear/SIAL
+https://github.com/naonori/hitomi
+https://github.com/Gabaldonlab/karyon
+https://github.com/davi-rodrigues/NAVanalysis
+https://github.com/jydu/physamp
+https://github.com/CederGroupHub/smol
+https://github.com/AstroVPK/kali
+https://github.com/QuaCaTeam/quaca
+https://github.com/eleniadam/npgreat
+https://github.com/marziarivi/RadioLensfit2
+https://github.com/ahwkuepper/mcluster
+https://github.com/eWaterCycle/eWaterleaf
+https://github.com/kibokov/GRUMPY
+https://github.com/lsds/Teechain
+https://github.com/sandmanns/CopyDetective
+https://github.com/fhtouma/subgen2
+https://github.com/cheng-zhao/FCFC
+https://github.com/ratt-ru/Stimela-classic
+https://github.com/ArenA-Crowds/Crowds
+https://github.com/viromelab/tracespipe
+https://github.com/FZJ-IEK3-VSA/LoadProfileGenerator
+https://github.com/pengweixing/FACT
+https://github.com/BioinformaticsPlatformWIV-ISP/PACU
+https://github.com/Lyalpha/spalipy
+https://github.com/fritzsedlazeck/Sniffles
+https://github.com/kbarbary/sep
+https://github.com/biobakery/halla
+https://github.com/low-sky/cprops
+https://github.com/phac-nml/mob-suite
+https://github.com/bcgsc/NanoSim
+https://github.com/itpplasma/GORILLA
+https://github.com/ropensci/antiword
+https://github.com/akdeniz-uzay/A-Track
+https://github.com/telatin/covtobed
+https://github.com/NLeSC/SalientDescriptor-matlab
+https://github.com/neeravkaushal/RIDs-in-WCDs
+https://github.com/SWIFTSIM/swiftsimio
+https://github.com/leishenggit/CircleBase
+https://github.com/auranic/ClinTrajan
+https://github.com/marius311/pypico
+https://github.com/pec27/hfof
+https://github.com/LCOGT/banzai-nres
+https://github.com/inrae/RCaNmodel
+https://github.com/ICESat2-SlideRule/paper
+https://github.com/BrownDwarf/gollum
+https://github.com/ziotom78/Healpix.jl
+https://github.com/nathanaelbosch/ProbNumDiffEq.jl
+https://github.com/CDSP-SCPO/metadata-middleware
+https://github.com/davidkipping/LDC3
+https://github.com/Trovemaster/Duo
+https://github.com/seisman/HinetPy
+https://github.com/ngbusca/QuasarNET
+https://github.com/lab-medvedeva/GADES-main
+https://github.com/sntioudis/papreca
+https://github.com/LalResearchGroup/CNV-clinviewer
+https://github.com/sauddy/GRINN
+https://github.com/nf-core/sarek
+https://github.com/ixkael/QuickSip
+https://github.com/ropensci/opencontext
+https://github.com/LeandroOrdonez/explora-vr-dash-client
+https://github.com/ropensci-archive/rodev
+https://github.com/ezquiaga/phazap
+https://github.com/mmp2/megaman
+https://github.com/ScialdoneLab/MitoHEAR
+https://github.com/CosmoStat/score
+https://github.com/CSUBioGroup/GraphLncLoc
+https://github.com/daddeptr/Needlets
+https://github.com/tikk3r/lofar-h5plot
+https://github.com/cgobat/asymmetric_uncertainty
+https://github.com/ggonnella/gfapy
+https://github.com/Ayuei/DeBEIR
+https://github.com/lrnv/cort
+https://github.com/bpp/bpp
+https://github.com/BioGearsEngine/core
+https://github.com/amerand/SPIPS
+https://github.com/jdonnert/WVTICs
 https://github.com/MedMaxLab/selfEEG
-https://github.com/TravisWheelerLab/NINJA
-https://github.com/Stuermer/EchelleSimulator
+https://github.com/SunilAnandatheertha/PXO
+https://github.com/dh4gan/oberon
+https://github.com/AstrobioMike/GToTree
+https://github.com/Kaixhin/FGMachine
+https://github.com/oliverphilcox/Spectra-Without-Windows
+https://github.com/scotthgn/AGNvar
+https://github.com/hippke/Pandora
+https://github.com/Chenmi0619/GALMoss
+https://github.com/phipsonlab/propeller-paper-analysis
+https://github.com/berenslab/MorphoPy
+https://github.com/JCGoran/coffe
+https://github.com/nutjunkie/IQmol
+https://github.com/cbielow/PTXQC
+https://github.com/cbg-ethz/PredictHaplo
+https://github.com/ncbi/vadr
+https://github.com/cedrus-opensource/pyxid
+https://github.com/easystats/parameters
+https://github.com/ExaScience/elprep
+https://github.com/astro-informatics/s2
+https://github.com/rust-bio/rust-bio-tools
+https://github.com/JLBLine/PUMA
+https://github.com/mtholder/ncl
+https://github.com/PDB-REDO/dssp
+https://github.com/spacepy/spacepy
+https://github.com/genotoul-bioinfo/Binette
+https://github.com/FrancesBW/bellamy
+https://github.com/LSSTDESC/CCL
+https://github.com/Weeks-UNC/RingMapper
+https://github.com/jenniferlu717/Bracken
+https://github.com/esquivas/guacho
+https://github.com/lanzen/ampliconnoise
 https://github.com/DotBots/qrkey
-https://github.com/tseemann/abricate
-https://github.com/masadcv/FastGeodis
-https://github.com/lynx-x-ray-observatory/soxs
-https://github.com/davideamato/NAPLES
-https://github.com/pnnl/interflow
-https://github.com/jkbonfield/htscodecs
-https://github.com/zavolanlab/PAQR2
-https://github.com/brinckmann/montepython_public
-https://github.com/patkel/big-macs-calibrate
-https://github.com/nabeelre/NIMBLE
-https://github.com/magnusmanske/snpomatic
-https://github.com/danxhuber/evolstate
-https://github.com/deeptools/py2bit
-https://github.com/amiralih/MembraneAnalysis.jl
-https://github.com/TimothyADavis/GAStimator
-https://github.com/revoltek/losoto
-https://github.com/ExObsSim/ExoRad2-public
-https://github.com/CSi-Studio/G-Aligner
-https://github.com/dcjones/quip
-https://github.com/rizkg/BBHash
-https://github.com/radio-astro-tools/uvcombine
-https://github.com/ropensci/ckanr
-https://github.com/kostergroup/SIMsalabim
-https://github.com/light-curve/light-curve
-https://github.com/SynthSys/pyOmeroUpload
-https://github.com/exoclime/HELIOS-K
-https://github.com/minaskar/hankl
-https://github.com/alan-turing-institute/DetectorChecker
-https://github.com/Alcampopiano/hypothesize
-https://github.com/wangjun1996/VisFeature
-https://github.com/agombolay/ribose-map
-https://github.com/sfschen/velocileptors
-https://github.com/NickSwainston/pulsar_spectra
-https://github.com/ocxtal/minialign
-https://github.com/BioMeCIS-Lab/OpenOmics
-https://github.com/ropensci/taxadb
+https://github.com/VirtualPlanetaryLaboratory/atmos
 https://github.com/oscaribv/pyaneti
-https://github.com/GalletFlorian/TATOO
-https://github.com/mrc-ide/EpiEstim
-https://github.com/connor-lab/vapor
-https://github.com/akdeniz-uzay/A-Track
-https://github.com/piernik-dev/piernik
-https://github.com/UTEL-UIUC/gtfs_segments
-https://github.com/Onogi/VIGoR
-https://github.com/LSSTDESC/CCL
-https://github.com/ropensci/traits
-https://github.com/ropensci/katex
-https://github.com/ropensci/bib2df
-https://github.com/ropensci/photosearcher
-https://github.com/alvinxhan/Phydelity
-https://github.com/AstroUGent/shadowfax
-https://github.com/Filter-Bubble/stroll
-https://github.com/AemulusProject/bias_emulator
-https://github.com/MatthijsHak/MetalDock
-https://github.com/santeripuranen/SpydrPick
-https://github.com/duffell/RT1D
-https://github.com/NLeSC/eEcology-Annotation-WS
-https://github.com/ropensci/ritis
-https://github.com/cconroy20/alf
-https://github.com/alejandrobll/py-sphviewer
-https://github.com/NKI-AI/direct
-https://github.com/damienmarsic/Parent-map
-https://github.com/LCOGT/neoexchange
-https://github.com/lemene/PECAT
-https://github.com/acerbilab/pybads
-https://github.com/WBK-Robotics/pybullet_industrial
-https://github.com/toros-astro/astroalign-legacy
-https://github.com/i-VRESSE/pdbtbx-ts
-https://github.com/pennsignals/chime
-https://github.com/equipeGST/RiboDoc
-https://github.com/tlambert03/pycudadecon
-https://github.com/multiply-org/sar-pre-processing
-https://github.com/NLeSC/spot
-https://github.com/ExeClim/Isca
-https://github.com/ropensci/rtweet
-https://github.com/JuliaOcean/AIBECS.jl
-https://github.com/chemfiles/chemfiles
-https://github.com/JCGonzS/mechnetor
-https://github.com/C3BI-pasteur-fr/toppred
-https://github.com/alekseyzimin/ufasta
-https://github.com/darthoctopus/reggae
-https://github.com/SHTOOLS/SHTOOLS
-https://github.com/ropensci/antiword
-https://github.com/ropensci/hoardr
-https://github.com/cblakeastro/intensitypower
-https://github.com/umbralcalc/helmpy
-https://github.com/ziyewang/ARG_SHINE
-https://github.com/hydroframe/subsettools
-https://github.com/jakelangham/kestrel
-https://github.com/MichaelAbdul-Masih/SPAMMS
-https://github.com/ropensci/rgnparser
-https://github.com/s4hts/HTStream
-https://github.com/segasai/rvspecfit
-https://github.com/dpseidel/stmove
-https://github.com/kiyo-masui/bitshuffle
-https://github.com/opengeos/HyperCoast
-https://github.com/PabloVD/21cmDeepLearning
-https://github.com/SPARC-FAIR-Codeathon/aqua
-https://github.com/BiodataAnalysisGroup/kmerAnalyzer
-https://github.com/AOtools/aotools
-https://github.com/ropensci/fulltext
-https://github.com/MrOlm/drep
-https://github.com/ropensci/phylogram
-https://github.com/lkmklsmn/DrivAER
-https://github.com/DarkQuestCosmology/dark_emulator_public
-https://github.com/steineggerlab/foldseek
-https://github.com/m2aia/m2aia
-https://github.com/benlansdell/ethome
-https://github.com/3D-e-Chem/knime-python-node-archetype
-https://github.com/MeasureTransport/MParT
-https://github.com/luizfelippesr/magnetizer
-https://github.com/matsen/pplacer
-https://github.com/undark-lab/albatross
-https://github.com/telatin/covtobed
-https://github.com/sciris/sciris
-https://github.com/abmantz/lmc
-https://github.com/tortellini-tools/action
-https://github.com/mkargo/pipeline
-https://github.com/valerio-marra/CalPriorSNIa
-https://github.com/mtakahiro/gsf
-https://github.com/ropensci/rmangal
-https://github.com/anchal-009/SAVED21cm
-https://github.com/Toloka/crowd-kit
-https://github.com/zhouzilu/DENDRO
-https://github.com/hveerten/boxfit
-https://github.com/COINtoolbox/ActSNClass
-https://github.com/nanoporetech/pomoxis
-https://github.com/Nicholaswogan/PhotochemPy
-https://github.com/ComparativeGenomicsToolkit/cactus
-https://github.com/matteobreschi/bajes
-https://github.com/MikeSWang/Harmonia
-https://github.com/databio/GenomicDistributions
-https://github.com/zenitani/OpenMHD
-https://github.com/carronj/lenspyx
-https://github.com/ropensci/vcr
-https://github.com/dynamicslab/pysindy
-https://github.com/BogdanCiambur/PROFILER
-https://github.com/semiautomaticgit/SemiAutomaticClassificationPlugin
-https://github.com/HERA-Team/matvis
-https://github.com/sidmohite/nimbus-astro
-https://github.com/c-zhou/yahs
-https://github.com/ropensci/unifir
-https://github.com/ropensci/getCRUCLdata
-https://github.com/hmtabernero/SteParSyn
-https://github.com/seap-udea/iWander
-https://github.com/czbiohub/cerebra
-https://github.com/junkoda/cola_halo
-https://github.com/Yomguithereal/talisman
+https://github.com/regonzar/paravt
+https://github.com/ropensci/ghql
+https://github.com/hfarias/mask_galaxy
+https://github.com/astrostat/Automark
+https://github.com/ddarriba/prottest3
+https://github.com/dh4gan/grapus
+https://github.com/nemesiscode/radtrancode
+https://github.com/basp-group/Optical-Interferometry-Trilinear
+https://github.com/JannisHoch/copro
+https://github.com/teamPSG/kNN_Sleep_Scorer_kNNSS
+https://github.com/eXtremeGravityInstitute/QuickCBC
+https://github.com/shahmoradi/grb_world
+https://github.com/ec363/fpcountr
+https://github.com/IBM/fold2seq
+https://github.com/pw31/GGchem
+https://github.com/pyomeca/biosiglive
+https://github.com/mithun218/GiNaCDE
+https://github.com/ropensci/bikedata
+https://github.com/zhoux85/scAdapt
+https://github.com/cire-thk/BifacialSimu
+https://github.com/Effective-Quadratures/Effective-Quadratures
+https://github.com/ropensci/magick
+https://github.com/AstroAccelerateOrg/astro-accelerate
+https://github.com/griffithlab/regtools
+https://github.com/mwhosek/extlaw_H18
+https://github.com/ropensci/fauxpas
+https://github.com/ropensci/robotstxt
+https://github.com/kerkelae/disimpy
+https://github.com/pedro-acunha/SHEEP
+https://github.com/ropensci/rglobi
+https://github.com/CosmoStatGW/gwfast
+https://github.com/interactivereport/OmicsView0
+https://github.com/flaminiafortuni/FORECAST
+https://github.com/smithlabcode/preseq
+https://github.com/astroboylrx/Rubble
+https://github.com/yanzhanglab/Graph2GO
+https://github.com/shilpagarg/WHdenovo
+https://github.com/stevenweaver/seqcomplexity
+https://github.com/kundajelab/phantompeakqualtools
+https://github.com/ronnyerrmann/HiFLEx
+https://github.com/ropensci/internetarchive
+https://github.com/ajosephy/Clustering
+https://github.com/teoxxx/nemiss_proper
+https://github.com/avigan/SPHERE
+https://github.com/aewallin/allantools
+https://github.com/Starlink/palpy
+https://github.com/equib/EQUIB
+https://github.com/temken/DaMaSCUS-SUN
+https://github.com/mlares/hearsay
+https://github.com/miguelcarcamov/csromer
+https://github.com/gwastro/pycbc
+https://github.com/DreamCloud-Project/AMALTHEA-Microworkload-Generator
+https://github.com/csb-toolbox/CSB
+https://github.com/easystats/performance
+https://github.com/zpenoyre/CausticFrog
+https://github.com/abs-tudelft/variant-calling-at-scale
+https://github.com/enthought/vpsearch
+https://github.com/Jacks0nJ/PyFPT
+https://github.com/LBC-LNBio/parKVFinder-win
+https://github.com/ropensci/rppo
+https://github.com/yfperezg/frisbhee
+https://github.com/microbioinformatic/Co-PATHOgenex
+https://github.com/wdpozzo/raynest
+https://github.com/rambaut/jebl2
+https://github.com/ropensci/stantargets
+https://github.com/gem-pasteur/Integron_Finder
+https://github.com/soylentdeen/CounterPoint
+https://github.com/chapmanb/bcbio.prioritize
+https://github.com/marcelm/dnaio
+https://github.com/oncoray/mirp
+https://github.com/NASA-PDS/naif-pds4-bundler
+https://github.com/donovan-h-parks/RefineM
+https://github.com/OceanGenomics/mudskipper
+https://github.com/pikarpov-LANL/Sapsan
+https://github.com/imr-framework/OCTOPUS
+https://github.com/CSB5/lofreq
+https://github.com/dlinssen/sunbather
+https://github.com/ropensci/DoOR.functions
+https://github.com/astropy/astroquery
+https://github.com/christopherlovell/sengi
+https://github.com/JonasRieger/ldaPrototype
 https://github.com/sambit-giri/BCMemu
-https://github.com/halomod/hmf
-https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener
-https://github.com/fabiopardo/tonic
-https://github.com/Starlink/pal
-https://github.com/ggobi/ggobi
-https://github.com/demorest/nanopipe
-https://github.com/ExoCTK/exoctk
-https://github.com/PMBio/spatialde2-paper
-https://github.com/egpbos/barcode
-https://github.com/BioinformaticsPlatformWIV-ISP/PACU
-https://github.com/adithirgis/pollucheck
-https://github.com/gogrean/PyXel
-https://github.com/BIMSBbioinfo/pigx_rnaseq
-https://github.com/SSDataLab/psfmachine
-https://github.com/micahvista/MAMnet
-https://github.com/xraypy/xraylarch
-https://github.com/davi-rodrigues/CCBH-Numerics
-https://github.com/ugovaretto/molekel
-https://github.com/NLESC-JCER/QMCblip
-https://github.com/xzackli/WignerFamilies.jl
+https://github.com/micbia/SubgridClumping
+https://github.com/fhaghighi/TransVW
+https://github.com/PacificBiosciences/pbcore
+https://github.com/pmelchior/epsnoise
+https://github.com/SarveshVGharat/Plages-Identification
+https://github.com/pscicluna/precision
+https://github.com/pmaxted/pycheops
+https://github.com/CouncilDataProject/cookiecutter-cdp-deployment
+https://github.com/Kaixhin/dockerfiles
+https://github.com/annehutter/polyspectrum
+https://github.com/biolab/orange-bio
+https://github.com/Alymantara/pydoppler
+https://github.com/jacobblum/simDRIFT
+https://github.com/nanoporetech/medaka
+https://github.com/siriobelli/flame
+https://github.com/ropensci/tabulizer
+https://github.com/nigyta/dfast_core
+https://github.com/NLeSC/compressing-the-sky
+https://github.com/bio-ontology-research-group/deepgoplus
+https://github.com/seqan/lambda
+https://github.com/davidgardenier/frbpoppy
+https://github.com/EACcodes/TigerCI
+https://github.com/jfwallin/JSPAM
+https://github.com/ropensci/CoordinateCleaner
+https://github.com/3D-e-Chem/knime-testflow
+https://github.com/valeriabonapersona/RePAIR
+https://github.com/ropensci/visdat
+https://github.com/younglab/origami
+https://github.com/nmslib/hnswlib
+https://github.com/ropensci/DataPackageR
+https://github.com/pontoppi/radlite
+https://github.com/FiorenSt/AutoSourceID-Light
+https://github.com/SysBioUAB/hpi_predictor
+https://github.com/ExoplanetML/Nigraha
+https://github.com/biomedia-mira/deepscm
+https://github.com/bodenlab/GRASP
+https://github.com/debian-tex/biber
+https://github.com/kennethcarrell/ATARRI
+https://github.com/staphopia/staphopia-paper
+https://github.com/NBISweden/MrBayes
+https://github.com/carlosborca/CrystaLattE
+https://github.com/davtsang/slimplectic
+https://github.com/JulianBMunoz/RelicFast
+https://github.com/daler/pybedtools
+https://github.com/mirochaj/ares
+https://github.com/equitable-equations/fqar
+https://github.com/ImperialCollegeLondon/magda_tools
+https://github.com/TearsWaiting/MIMML
+https://github.com/shangguandong1996/FindIT2
+https://github.com/GENtle-persons/gentle-m
+https://github.com/vanheeringen-lab/gimmemotifs
+https://github.com/Sydney-Informatics-Hub/OmixLitMiner
+https://github.com/jet-net/JetNet
+https://github.com/PopMedNet-Team/popmednet
+https://github.com/jkrogager/VoigtFit
+https://github.com/bcbio/bcbio-nextgen
+https://github.com/rainwoodman/bigfile
+https://github.com/DreamCloud-Project/McSim-Cycle-accurate-NoC
+https://github.com/GabrieleParimbelli/COLIBRI
+https://github.com/Ge-Lab/USAT
+https://github.com/NeamulKabir/EnsembleFam
+https://github.com/guynir42/radon
+https://github.com/octopus-sensing/octopus-sensing
+https://github.com/EliseJ/superabc
+https://github.com/somefunAgba/NLSIG-COVID19Lab
+https://github.com/prajwel/curvit
+https://github.com/LCOGT/banzai
+https://github.com/TRACER-LULab/Hyperelastics.jl
+https://github.com/KenethGarcia/ClassiPyGRB
+https://github.com/trivnguyen/florah
+https://github.com/sbraden/circle-craters
+https://github.com/aabdurrouf/piXedfit
+https://github.com/pierrexyz/cbird
+https://github.com/ropensci/tarchetypes
+https://github.com/ymocquar/HOODESolver.jl
+https://github.com/ckarako/RRATtrap
+https://github.com/Crompulence/cpl-library
+https://github.com/soedinglab/MMseqs2
+https://github.com/tcallister/autoregressive-bbh-inference
+https://github.com/barahona-research-group/hcga
+https://github.com/esheldon/ngmix
+https://github.com/PDB-REDO/density-fitness
+https://github.com/elkebir-group/Jumper
+https://github.com/JohannesBuchner/nway
 https://github.com/ebmonson/2DFFTUtils-Module
-https://github.com/cosmo-ethz/CosmoHammer
-https://github.com/exosports/BART
-https://github.com/palaeoware/trevosim
-https://github.com/FDPS/FDPS
-https://github.com/PACurran/MCSpearman
-https://github.com/ruiying-ocean/cgeniepy
-https://github.com/phac-nml/sistr_cmd
-https://github.com/IMMM-SFA/tell
-https://github.com/xcompact3d/Incompact3d
-https://github.com/cmgcds/fastvpinns
-https://github.com/bioexcel/biobb_wf_flexdyn
-https://github.com/ropensci/pangaear
-https://github.com/ziotom78/dacapo_calibration
-https://github.com/BIC-MNI/libminc
-https://github.com/sntioudis/papreca
-https://github.com/aschafu/PSSH2
-https://github.com/CavendishAstrophysics/anmap
-https://github.com/BioSTEAMDevelopmentGroup/thermosteam
-https://github.com/wathela/FIRST-CLASSIFIER
-https://github.com/mommermi/photometrypipeline
-https://github.com/mathjax/MathJax
-https://github.com/c-white/blacklight
-https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI
-https://github.com/spacetelescope/exovetter
-https://github.com/t-brandt/fitramp
-https://github.com/GeodynamicWorldBuilder/WorldBuilder
-https://github.com/ropensci/taxize
-https://github.com/BoevaLab/FREEC
-https://github.com/ropensci/ghql
-https://github.com/ClapeyronThermo/GCIdentifier.jl
-https://github.com/bradkav/AntiparticleDM
-https://github.com/PacificBiosciences/pbcopper
-https://github.com/solerjuan/magnetar
-https://github.com/doriancazeneuve/ODNet
-https://github.com/linsalrob/PhiSpy
+https://github.com/ropensci/rnaturalearth
+https://github.com/NLESC-JCER/QMCblip
+https://github.com/Hoecker-Lab/atligator
+https://github.com/igmhub/LyaCoLoRe
+https://github.com/odelaneau/shapeit4
+https://github.com/CosmoStatGW/MGCosmoPop
+https://github.com/AliYoussef96/parazitCUB
+https://github.com/kritiyer/AngioNet
+https://github.com/jeremysanders/xspec_emcee
+https://github.com/dfm/corner.py
+https://github.com/ntcockroft/STarFish
+https://github.com/oliverphilcox/HADES
+https://github.com/mlegr/EqualISER
+https://github.com/ropensci/rOPTRAM
+https://github.com/vreverdy/magrathea-pathfinder
+https://github.com/asmusskar/ALVA
+https://github.com/sandialabs/pvOps
+https://github.com/mischaschirmer/nebular
+https://github.com/CFSAN-Biostatistics/SeroTools
+https://github.com/WMD-group/StarryNight
+https://github.com/kernsuite-debian/parseltongue
+https://github.com/morispi/LRez
+https://github.com/linksmart/thing-directory
+https://github.com/ropensci/virtuoso
+https://github.com/nf-core/mag
+https://github.com/Climdyn/qgs
+https://github.com/N-BodyShop/smooth
 https://github.com/LangeLab/SQuAPP
-https://github.com/ArkajyotiSaha/RandomForestsGLS
+https://github.com/tudelft3d/3dfier
+https://github.com/DrJieZheng/meanoffset
+https://github.com/spedas/pyspedas
+https://github.com/bartongroup/yanosim
+https://github.com/tldr-group/taufactor
+https://github.com/nanoporetech/pychopper
+https://github.com/ropensci/plater
+https://github.com/caseyjlaw/tpipe
+https://github.com/csmsoftware/IMPaCTS
+https://github.com/project-asgard/asgard
+https://github.com/dunnkers/fseval
+https://github.com/sfeeney/ddspectra
+https://github.com/NBISweden/AGAT
+https://github.com/jamesaird/FAST
+https://github.com/mdolab/pygeo
+https://github.com/dgerosa/spops
+https://github.com/sheryl-ai/MetaPred
+https://github.com/CoLRev-Environment/bib-dedupe
+https://github.com/cosimoNigro/agnpy
+https://github.com/nasa/prog_models
+https://github.com/neuralhydrology/neuralhydrology
+https://github.com/jrkerns/pylinac
+https://github.com/MikeSWang/Harmonia
+https://github.com/mlinderm/npsv
+https://github.com/cistib/origami
+https://github.com/yair111/AnalyticLC
+https://github.com/ropensci/graphql
+https://github.com/ropensci/rentrez
+https://github.com/SwiftVISA/SwiftVISASwift
+https://github.com/AdmiralenOla/Scoary
+https://github.com/pavolgaj/OCFit
+https://github.com/bulik/ldsc
+https://github.com/lgbouma/gyro-interp
+https://github.com/joshuakt/Oxygen-False-Positives
+https://github.com/ropensci/AntWeb
+https://github.com/bempp/bempp-cl
+https://github.com/katholt/Kleborate
+https://github.com/PGB-LIV/MHCVision
+https://github.com/Glogobyte/miRGalaxy
+https://github.com/mrc-ide/provisionr
+https://github.com/agordon/fastx_toolkit
+https://github.com/husseinaluie/FlowSieve
+https://github.com/Ouranosinc/xclim
+https://github.com/UCBerkeleySETI/turbo_seti
+https://github.com/aimalz/qp
+https://github.com/maxibor/sam2lca
+https://github.com/kircherlab/cfDNA-UniFlow
+https://github.com/jradavenport/TheHammer
+https://github.com/CadenArmstrong/simuTrans
+https://github.com/changliao1025/pyflowline
+https://github.com/mishioo/tesliper
+https://github.com/ropensci/codemetar
+https://github.com/casaluca/bolometric-corrections
+https://github.com/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling
+https://github.com/orbisgis/lczexplore
+https://github.com/gkulkarni/QLF
+https://github.com/hendr1km/dropout
+https://github.com/teuben/DataComb
+https://github.com/lh3/minimap2
+https://github.com/metabolomicsworkbench/MetGENE
+https://github.com/egonw/bacting
+https://github.com/sheydenreich/threepoint
+https://github.com/R-Vessel-X/SlicerRVXLiverSegmentation
+https://github.com/Exo-TiC/ExoTiC-LD
+https://github.com/ropensci/tidypmc
+https://github.com/MoreiraLAB/mensadb-open
+https://github.com/MP-Gadget/bigfile
+https://github.com/CEA-MetroCarac/fitspy
+https://github.com/gnave/Xgremlin
+https://github.com/hydroframe/subsettools
+https://github.com/studla/RYUTO
+https://github.com/ropensci/wellknown
+https://github.com/dfujim/bfit
+https://github.com/PEJpOhno/SMiPoly
+https://github.com/alan-turing-institute/DetectorChecker
+https://github.com/AndrewAnnex/SpiceyPy
+https://github.com/blankhaar/PORTAL
+https://github.com/eXtremeGravityInstitute/LISA-Massive-Black-Hole
+https://github.com/cosmo-ethz/CosmoHammer
+https://github.com/rsnemmen/BCES
+https://github.com/semaphoreP/whereistheplanet
+https://github.com/TRASAL/AMBER
+https://github.com/davidebolo1993/VISOR
+https://github.com/metagenlab/assembly_finder
+https://github.com/afarahi/tatter
+https://github.com/mdsteiner/EFAtools
+https://github.com/ucl-exoplanets/TauREx3_public
+https://github.com/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP
+https://github.com/PacificBiosciences/bam2fastx
+https://github.com/xenon-middleware/xenon-cli
+https://github.com/RuthAngus/stardate
+https://github.com/TheFischerLab/FLEXR
+https://github.com/ropensci/wikitaxa
+https://github.com/dwkim78/ASTRiDE
+https://github.com/ropensci/rebird
+https://github.com/wmalab/EnHiC
+https://github.com/EpistasisLab/regens
+https://github.com/sibirrer/psfr
+https://github.com/dtamayo/reboundx
+https://github.com/cboursnell/crb-blast
+https://github.com/BU-ISCIII/iSkyLIMS
+https://github.com/jakelever/civicmine
+https://github.com/QingyuLiaib/PLA-MoRe
+https://github.com/mattpitkin/lintegrate
+https://github.com/GOBLIN-Proj/goblin_lite
+https://github.com/ropensci/rgbif
+https://github.com/ropensci/rmangal
+https://github.com/vpc-ccg/calib
+https://github.com/ropensci/citecorp
+https://github.com/hsci-r/finnish-media-scrapers
+https://github.com/ska-sa/katdal
+https://github.com/khyox/recentrifuge
 https://github.com/ropensci/aRxiv
-https://github.com/beebdev/HARU
-https://github.com/LCOGT/banzai
-https://github.com/darioizzo/dcgp
-https://github.com/Blosc/c-blosc
-https://github.com/ctSkennerton/crass
-https://github.com/ropensci/citesdb
-https://github.com/rx-li/EasyCellType
-https://github.com/lanzen/ampliconnoise
-https://github.com/philres/ngmlr
-https://github.com/SuperKogito/spafe
-https://github.com/JuliaGeometry/DelaunayTriangulation.jl
-https://github.com/mwvgroup/pwv_kpno
-https://github.com/odelaneau/shapeit4
-https://github.com/Lnasellentin/DALI
-https://github.com/felixchenier/kineticstoolkit
-https://github.com/JiangFangzhou/SIDM
-https://github.com/EliseJ/astroABC
-https://github.com/aobr/gsf
-https://github.com/insilico/cncv
-https://github.com/parklab/LiRA
-https://github.com/candYgene/abg-ld
-https://github.com/mkelley/zchecker
-https://github.com/marbl/Mash
-https://github.com/DICP1810/ComMap
-https://github.com/jumphone/InferLoop
-https://github.com/NLeSC/xtas
-https://github.com/inonchiu/ComEst
-https://github.com/agordon/fastx_toolkit
+https://github.com/MD-Studio/cerise
+https://github.com/Electrostatics/apbs
+https://github.com/MillionConcepts/lhorizon
+https://github.com/LSSTDESC/chroma
+https://github.com/lyf222/alpconv
+https://github.com/cpinte/casa_cube
+https://github.com/Zstone19/pypetal
+https://github.com/gpantel/MolPainter
+https://github.com/JohannesBuchner/PyMultiNest
+https://github.com/scottgigante/picopore
+https://github.com/jtschindler/sculptor
+https://github.com/PeterKamphuis/FAT
+https://github.com/giuspugl/picasso
+https://github.com/ahoward-cf/ppmap
+https://github.com/rkiman/wdwarfdate
+https://github.com/lucatelli/morphen
+https://github.com/PabloVD/21cmDeepLearning
+https://github.com/SKA-INAF/caesar-rest
+https://github.com/ropensci/charlatan
+https://github.com/sanger-pathogens/Fastaq
+https://github.com/temken/Dirac_vs_Majorana
+https://github.com/mmollina/viewpoly
+https://github.com/paulsengroup/hictk
+https://github.com/Jingxuan97/nemesispy
+https://github.com/opencollab/arpack-ng
+https://github.com/MarioRomeroC/Mixclask
+https://github.com/uwssg/APS
+https://github.com/soedinglab/spacepharer
+https://github.com/PhilippJunk/homelette
+https://github.com/rae-holcomb/SpinSpotter
+https://github.com/Jinsl-lab/SDImpute
+https://github.com/mlysy/LocalCop
+https://github.com/fgbuster/fgbuster
+https://github.com/FergusDonnan/Running-Optimal-Average
+https://github.com/b-pardi/BraTaDio
+https://github.com/DidierMurilloF/FielDHub
+https://github.com/SHTOOLS/SHTOOLS
+https://github.com/grimme-lab/xtb
+https://github.com/shadden/celmech
 https://github.com/agreenbaum/ImPlaneIA
-https://github.com/johnlees/seer
-https://github.com/MegaMorph/galapagos-c
-https://github.com/mifumagalli/cluster-cloc
-https://github.com/SciLifeLab/TIDDIT
-https://github.com/ropensci/terrainr
-https://github.com/spyder-ide/spyder
-https://github.com/bareid/cosmoxi2d
+https://github.com/astroweaver/the_farmer
+https://github.com/nickk124/RCR
+https://github.com/BjoernBiltzinger/pyspi
+https://github.com/scottleedavis/google-earth-toolbox
+https://github.com/vgl-hub/gfastats
+https://github.com/agree019/DarkCapPy
+https://github.com/jmason86/James-s-EVE-Dimming-Index-JEDI
+https://github.com/amoradinejad/limHaloPT
+https://github.com/SJ001/AI-Feynman
+https://github.com/waynebhayes/SpArcFiRe
+https://github.com/ropensci/tesseract
+https://github.com/sing-group/seda
+https://github.com/NLeSC/eEcology-script-wrapper
+https://github.com/ropensci/biomartr
+https://github.com/zhangrengang/SubPhaser
+https://github.com/fkiwy/Finder_charts
+https://github.com/BenWibking/quokka
+https://github.com/MichaelCretignier/Rassine_public
+https://github.com/Keck-DataReductionPipelines/KcwiDRP
+https://github.com/LeoEgidi/pivmet
+https://github.com/jobovy/gaia_tools
+https://github.com/s-goldman/Dusty-Evolved-Star-Kit
+https://github.com/ropensci/wateRinfo
+https://github.com/ropensci/osmdata
+https://github.com/QEF/q-e
+https://github.com/njcuk9999/apero-drs
+https://github.com/sevenstarknight/OCDetector
+https://github.com/cma2015/iwa-miRNA
+https://github.com/wbalmer/backtracks
+https://github.com/JLBLine/WODEN
+https://github.com/radio-astro-tools/spectral-cube
+https://github.com/geodynamics/Rayleigh
+https://github.com/StephenJHardy/SL1M
+https://github.com/mrempel/geohexviz
+https://github.com/ropensci/Rpolyhedra
+https://github.com/potassco/clingo
+https://github.com/pratheesh3780/grapesAgri1
+https://github.com/copasi/COPASI
+https://github.com/lgrcia/prose
+https://github.com/BogdanCiambur/PROFILER
+https://github.com/Smith42/astroddpm
+https://github.com/Astro-Sean/escatter
+https://github.com/ylxu05/HN-PPISP
+https://github.com/alchemistry/alchemlyb
+https://github.com/tseemann/snp-dists
+https://github.com/saeyslab/CytoNorm_Figures
+https://github.com/astropy/SPISEA
+https://github.com/pynbody/genetIC
+https://github.com/asgr/hyper.fit
+https://github.com/EskelandLab/ShinyArchRUiO
+https://github.com/minaskar/zeus
+https://github.com/Illumina/ExpansionHunterDenovo
+https://github.com/stamatak/ExaML
+https://github.com/robertwissing/EOS
+https://github.com/vavrines/Kinetic.jl
+https://github.com/ropensci/hunspell
+https://github.com/jfmrod/MAPseq
+https://github.com/lmwalkowicz/Cheetah
+https://github.com/pierrepeterlongo/back_to_sequences
+https://github.com/jakeret/tf_unet
+https://github.com/muLAn-project/muLAn
+https://github.com/faircloth-lab/phyluce
+https://github.com/ropensci/pubchunks
+https://github.com/dstansby/pfsspy
+https://github.com/astromer-science/main-code
+https://github.com/cole-trapnell-lab/monocle3
+https://github.com/timstaley/amisurvey
+https://github.com/jakeown/astroclover
+https://github.com/lnscan/mitoSplitter
+https://github.com/iomega/zenodo-upload
+https://github.com/TeraTrees/TIPP
+https://github.com/iomega/spec2vec
+https://github.com/hall-lab/speedseq
+https://github.com/pierfied/karmma
+https://github.com/PopGenClustering/Clumppling
+https://github.com/lofar-astron/DP3
+https://github.com/pjcigan/pysymlog
+https://github.com/USEPA/SSN2
+https://github.com/pybel/bel-resources
+https://github.com/apertif/apercal
+https://github.com/GreenBankObservatory/gbtgridder
+https://github.com/mikecokina/elisa
+https://github.com/davidemms/OrthoFinder
+https://github.com/mommermi/photometrypipeline
+https://github.com/saeyslab/nichenetr
+https://github.com/bioinfo-ut/PlasmidSeeker
+https://github.com/LTLA/gesel.js
+https://github.com/nasa/K2CE
+https://github.com/ropensci/tacmagic
+https://github.com/devitocodes/devito
+https://github.com/christophuv/PeakBot_Example
+https://github.com/vijayvarma392/binaryBHexp
+https://github.com/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY
+https://github.com/jodyphelan/tb-ml
+https://github.com/BioHPC/MegaD
+https://github.com/al-mcintyre/mCaller
+https://github.com/richteague/eddy
+https://github.com/RenneLab/hybkit
+https://github.com/hongli-ma/RNANetMotif
+https://github.com/alexander-mead/HMcode
+https://github.com/TRASAL/psrdada-python
+https://github.com/ropensci/nlrx
+https://github.com/ropensci/phylotaR
+https://github.com/heatherprince/cosmoped
+https://github.com/HHTpy/HHTpywrapper
+https://github.com/brentp/somalier
+https://github.com/davidgardenier/frbcat
+https://github.com/rordenlab/dcm2niix
+https://github.com/nextflow-io/nextflow
+https://github.com/YihanWangAstro/SpaceHub
+https://github.com/theia-dev/Qiber3D
+https://github.com/10XGenomics/bamtofastq
+https://github.com/anuradhawick/LRBinner
+https://github.com/RafaelSdeSouza/qrpca
+https://github.com/timoast/signac
+https://github.com/mrc-ide/ring
+https://github.com/jstjohn/SeqPrep
+https://github.com/abmantz/lrgs
+https://github.com/opimwue/ddop
+https://github.com/brinckmann/montepython_public
+https://github.com/libgamera/GAMERA
+https://github.com/javicarron/pynkowski
+https://github.com/poldracklab/nitransforms
+https://github.com/daeken/Emokit
+https://github.com/pokynmr/iPick
+https://github.com/spacetelescope/astronify
+https://github.com/pmelchior/scarlet
+https://github.com/ggobi/ggobi
+https://github.com/OpenMDAO/dymos
+https://github.com/Junwu302/HiFun
+https://github.com/astro-informatics/massmappy
+https://github.com/ocean-eddy-cpt/gcm-filters
+https://github.com/sciris/sciris
+https://github.com/ropensci/mctq
+https://github.com/moble/scri
+https://github.com/3D-e-Chem/knime-kripodb
+https://github.com/ropensci/epubr
+https://github.com/vsoch/gridtest
+https://github.com/mggg/ecological-inference
+https://github.com/paulmorio/gincco
+https://github.com/oschwengers/referenceseeker
+https://github.com/andreaminio/HaploSync
+https://github.com/pezmaster31/bamtools
+https://github.com/raghuastro/GRIZZLY
+https://github.com/snad-space/coniferest
+https://github.com/COINtoolbox/CosmoPhotoz
+https://github.com/healytwin1/HISS
+https://github.com/c-white/blacklight
+https://github.com/AFD-Illinois/iharm3d
+https://github.com/dfm/photodynam
+https://github.com/y-256/libdivsufsort
+https://github.com/hall-lab/bamkit
+https://github.com/spacetelescope/stginga
+https://github.com/mc-imperial/gpuverify
+https://github.com/vsoch/citelang
+https://github.com/OpenWaterAnalytics/pyswmm
+https://github.com/dengzhuo-AI/Real-Fundus
+https://github.com/wokast/RePrimAnd
+https://github.com/rodluger/everest
+https://github.com/google/best
+https://github.com/epi2me-labs/mapula
+https://github.com/tomasstolker/species
+https://github.com/klevis-a/kinematics-vis
+https://github.com/JixingGE/GGCHEMPY
+https://github.com/BioMedIA/MIRTK
+https://github.com/vrodgom/statmorph
+https://github.com/lsds/Neptune
+https://github.com/lsds/KungFu
+https://github.com/grburgess/ronswanson
+https://github.com/Nicholaswogan/PhotochemPy
+https://github.com/KennethEnevoldsen/augmenty
+https://github.com/anderslogg/geco
+https://github.com/dzerbino/velvet
+https://github.com/ropensci/rotl
+https://github.com/jbattat/pep_core
+https://github.com/radiocosmology/caput
+https://github.com/clwainwright/CosmoTransitions
+https://github.com/i-VRESSE/pdbtbx-ts
+https://github.com/Substra/substra
+https://github.com/RamanLab/iCOMIC
+https://github.com/ImperialCollegeLondon/fractalgenetics
+https://github.com/NERDSITU/superblockify
 https://github.com/Open-ET/flux-data-qaqc
-https://github.com/VMBoehm/MADLens
-https://github.com/statOmics/satuRnPaper
-https://github.com/ablab/spades
-https://github.com/Martindelosrios/ROGER
-https://github.com/3D-e-Chem/sygma
-https://github.com/LSSTDESC/Spectractor
-https://github.com/EcoJulia/SimpleSDMLayers.jl
-https://github.com/noraeisner/LATTE
-https://github.com/damonge/CUTE
-https://github.com/BackofenLab/Peakhood
-https://github.com/davidgardenier/frbpoppy
-https://github.com/jaimedelacruz/stic
-https://github.com/sid-krish/Rhometa_Full_Genome
-https://github.com/auranic/ClinTrajan
-https://github.com/shangguandong1996/FindIT2
-https://github.com/ropensci/brranching
-https://github.com/timchurches/NetEpi-Collection
-https://github.com/simple-crypto/SCALib
-https://github.com/ben-cassese/squishyplanet
-https://github.com/shbhuk/mrexo
-https://github.com/eWaterCycle/jupyterlab_thredds
-https://github.com/refresh-bio/agc
-https://github.com/astrostat/BASCS
-https://github.com/beckrob/Photo-z-SQL
-https://github.com/meenakshi-kushwaha/mmaqshiny
-https://github.com/ropensci/phonfieldwork
-https://github.com/JiangYuTS/FacetClumps
-https://github.com/tsipkens/atems
-https://github.com/mms-fcul/PypKa
-https://github.com/temken/Dirac_vs_Majorana
-https://github.com/BezuidenhoutMC/SeeKAT
-https://github.com/lofar-astron/RMextract
-https://github.com/PopMedNet-Team/popmednet
-https://github.com/asgr/ProPane
-https://github.com/flintproject/Flint
-https://github.com/tornede/py_experimenter
-https://github.com/logan-pearce/lofti_gaia
-https://github.com/nivha/three_body_integration
-https://github.com/Romea/romea-core-common
-https://github.com/ruggiero/galstep
-https://github.com/ropensci/rbace
-https://github.com/silx-kit/pyFAI
-https://github.com/ranieremenezes/easyFermi
-https://github.com/giswqs/lidar
-https://github.com/ericcombiolab/LRTK
-https://github.com/vsbuffalo/scythe
-https://github.com/sethspjohnso/satmc
-https://github.com/anwarbio/bioassays
-https://github.com/astrockragh/Mangrove
-https://github.com/dirac-institute/asterogap
-https://github.com/stamatak/ExaML
-https://github.com/nf-core/viralrecon
-https://github.com/p-slash/qsonic
-https://github.com/rafaeleufrasio/lightning
-https://github.com/JakobBD/pounce
-https://github.com/WorkflowConversion/CTDConverter
-https://github.com/dylancromer/ostrich
-https://github.com/mudit-jain90/i-SPin
-https://github.com/IMMM-SFA/gamut
-https://github.com/jfalconbarroso/BAYES-LOSVD
-https://github.com/cgobat/asymmetric_uncertainty
-https://github.com/sfarrens/sfof
-https://github.com/KenethGarcia/ClassiPyGRB
-https://github.com/aprsa/dips
-https://github.com/apcamargo/prodigal-gv
-https://github.com/shahmoradi/grb_world
-https://github.com/creanero/locus
-https://github.com/Joost987/MONDPMesh
-https://github.com/schlafly/crowdsource
-https://github.com/gbernstein/pixmappy
-https://github.com/pjcigan/multicolorfits
-https://github.com/ggonnella/gfapy
-https://github.com/elkebir-group/Jumper
-https://github.com/temken/obscura
-https://github.com/ropensci/pubchunks
-https://github.com/E3SM-Project/gdess
+https://github.com/OrlandoLam/SAMT
+https://github.com/ropensci/RNeXML
+https://github.com/NLeSC/scriptcwl
 https://github.com/Valar-hub/MMLPhoto-z
-https://github.com/christopher-vollmers/C3POa
-https://github.com/cnellington/Contextualized
-https://github.com/grahambell/pymoc
-https://github.com/DeepRank/iScore
-https://github.com/geza-kovacs/tran_k2
-https://github.com/ropensci/rAvis
-https://github.com/eggnogdb/eggnog-mapper
-https://github.com/basp-group/Faceted-HyperSARA
-https://github.com/rvaser/rampler
-https://github.com/gorpipe/gor
-https://github.com/dgrin1/axionCAMB
-https://github.com/ESMValGroup/ESMValTool
-https://github.com/cosmo-ethz/hide
-https://github.com/SCM-NV/qmflows
-https://github.com/constantAmateur/SoupX
-https://github.com/damonge/CRIME
-https://github.com/ropensci/rzmq
-https://github.com/pysal/pysal
-https://github.com/dh4gan/taktent
-https://github.com/ropensci/bold
-https://github.com/SpaceOdyssey/Blobby3D
-https://github.com/he2016012996/CABnet
-https://github.com/HUST-DataMan/FRMC
-https://github.com/eWaterCycle/eWaterleaf
-https://github.com/jkrogager/VoigtFit
-https://github.com/rice-solar-physics/EBTEL
-https://github.com/pyplati/platipy
-https://github.com/3d-pli/fastpli
-https://github.com/leesulab/arcMS
-https://github.com/jtksai/PyCOOL
-https://github.com/chapmanb/bcbio.prioritize
-https://github.com/margudo/LSSGALPY
-https://github.com/mzytnicki/srnaMapper
-https://github.com/xenon-middleware/pyxenon
-https://github.com/djgroen/MPWide
-https://github.com/ropensci/suppdata
-https://github.com/xxsds/DYNAMIC
-https://github.com/darrencroton/sage
-https://github.com/brentp/cigar
-https://github.com/pw31/GGchem
-https://github.com/astro-datalab/noaosourcecatalog
-https://github.com/bcgov/bcdata
-https://github.com/Smith42/astroddpm
-https://github.com/spacetelescope/mirage
-https://github.com/cns-iu/HRA-supporting-information
-https://github.com/metaOmics/MetaPath
-https://github.com/kendomaniac/docker4seq
-https://github.com/smaret/thindisk
-https://github.com/JuliaOcean/PlanktonIndividuals.jl
-https://github.com/caseyjlaw/rtpipe
-https://github.com/hillerlab/GenomeAlignmentTools
-https://github.com/paulsengroup/hictk
-https://github.com/HKU-BAL/Clair3
-https://github.com/tvwenger/hii-region-kinematics
-https://github.com/mingzehuang/latentcor
-https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Objects
-https://github.com/ratt-ru/solarkat
-https://github.com/ITA-Solar/rh
-https://github.com/siriobelli/flame
-https://github.com/ADAH-EviDENce/evidence
-https://github.com/vpc-ccg/svict
-https://github.com/ArisTr/PyRaTE
-https://github.com/Kaixhin/FGMachine
-https://github.com/jdonnert/WVTICs
-https://github.com/sparks-baird/xtal2png
-https://github.com/jeffzhen/omnical
-https://github.com/ImperialCollegeLondon/UVLM
-https://github.com/MikeSWang/Triumvirate
-https://github.com/pierrexyz/pybird
-https://github.com/exoclime/Helios-r2
-https://github.com/ishinder/EASTR
-https://github.com/bshoshany/OGRe
-https://github.com/openscm/openscm-twolayermodel
-https://github.com/ropensci/rfishbase
-https://github.com/ICB-DCM/pyABC
-https://github.com/dpryan79/MethylDackel
-https://github.com/wvanzeist/riroriro
+https://github.com/facom/exorings
+https://github.com/geoelements/gns
+https://github.com/wdecoster/nanocomp
+https://github.com/BGI-Qingdao/TGS-GapCloser
+https://github.com/dirac-institute/asterogap
+https://github.com/MRCIEU/metaboprep
+https://github.com/python-hydro/pyro2
+https://github.com/Rohit-Kundu/ET-NET_Covid-Detection
+https://github.com/Starlink/pal
+https://github.com/biocore/emperor
+https://github.com/henrycousins/gspa
+https://github.com/astrobrent/mappings
+https://github.com/hveerten/boxfit
+https://github.com/simonsobs/nemo
+https://github.com/srdc/onfhir
+https://github.com/ssadedin/bazam
+https://github.com/lh3/bfc
+https://github.com/lh3/miniasm
+https://github.com/dbosul/cwitools
+https://github.com/pelican/pelican
+https://github.com/aineniamh/snipit
+https://github.com/CNES/EleFits
+https://github.com/ropensci/cchecks
+https://github.com/annayqho/TheCannon
+https://github.com/saltastro/pyhrs
+https://github.com/sevenstarknight/SSMM
+https://github.com/AlexanderBartholomaeus/smORFer
+https://github.com/rauschenberger/joinet
+https://github.com/ec363/parsleyapp
+https://github.com/mpound/pdrtpy
+https://github.com/dputhier/pygtftk
+https://github.com/Alcampopiano/hypothesize
+https://github.com/Sudaraka88/LDWeaver
+https://github.com/anwarbio/bioassays
+https://github.com/NicOudart/PyBWE
+https://github.com/Kaixhin/Autoencoders
+https://github.com/ropensci/solrium
+https://github.com/ctSkennerton/minced
+https://github.com/splicebox/PsiCLASS
+https://github.com/jobovy/apogee
+https://github.com/ropensci/exoplanets
+https://github.com/CaymanUnterborn/ExoPlex
+https://github.com/MichaelAbdul-Masih/SPAMMS
+https://github.com/EdgeVPNio/evio
+https://github.com/nickjcroucher/gubbins
+https://github.com/CavendishAstrophysics/anmap
+https://github.com/denglab/SeqSero
+https://github.com/elsoroka/Satisfiability.jl
+https://github.com/mbejger/polgraw-allsky
+https://github.com/cmzmasek/forester
+https://github.com/ropensci/spelling
+https://github.com/GaryBAYLOR/mixR
+https://github.com/biolab/orange3-network
+https://github.com/cdalvaro/machine-learning-master-thesis
+https://github.com/INCF/one_click
+https://github.com/tyo-nu/MINE-app
+https://github.com/gianthk/ciclope
+https://github.com/smirik/resonances
+https://github.com/4dn-dcic/pairix
+https://github.com/matthiasdemuzere/w2w
+https://github.com/heli-xu/findSVI
+https://github.com/pyranges/pyrle
+https://github.com/GOMC-WSU/GOMC
+https://github.com/UTEL-UIUC/gtfs_segments
+https://github.com/RangamaniLabUCSD/smart
+https://github.com/genotoul-bioinfo/dgenies
+https://github.com/NielsenBerkeleyLab/sconce
+https://github.com/deeprob/ThioesteraseEnzymeSpecificity
+https://github.com/krab1k/ChargeFW2
+https://github.com/KonradHoeffner/hdt
+https://github.com/JuliaDiff/ForwardDiff.jl
+https://github.com/PrincetonUniversity/Athena-Cversion
+https://github.com/nlesc-nano/ceiba
+https://github.com/giswqs/leafmap
+https://github.com/BonsonW/slow5curl
+https://github.com/igvteam/igv-reports
+https://github.com/JSB-UCLA/scPNMF
+https://github.com/JakobBD/pounce
+https://github.com/cistrome/MIRA
+https://github.com/palaeoware/revosim
+https://github.com/soundata/soundata
+https://github.com/jw-lin/lightbeam
+https://github.com/mneeleman/qubefit
+https://github.com/ropensci/ots
+https://github.com/CollinErickson/GauPro
+https://github.com/vidakris/flatwrm
+https://github.com/mudit-jain90/i-SPin
+https://github.com/ropensci/hddtools
+https://github.com/schulze61/RhoPop
+https://github.com/shihyuntang/igrins_rv
+https://github.com/jeetsukumaran/DendroPy
+https://github.com/OSeMOSYS/otoole
+https://github.com/ntoles/tristan-mp-pitp
+https://github.com/Parsl/parsl
+https://github.com/giuspugl/fgcluster
+https://github.com/ropensci/restez
 https://github.com/fccoelho/epimodels
-https://github.com/ajwheeler/Korg.jl
-https://github.com/ropensci/rerddap
-https://github.com/seawander/centerRadon
-https://github.com/wf4ever/astrotaverna
-https://github.com/MNiwano/Eclaire
-https://github.com/richford/groupyr
-https://github.com/chemprop/chemprop_benchmark
-https://github.com/WelbornGroup/ELECTRIC
-https://github.com/mentatpsi/OSGenome
-https://github.com/yjx1217/RecombineX
-https://github.com/astro-informatics/sleplet
-https://github.com/guangtunbenzhu/SetCoverPy
-https://github.com/wajidarshad/ESIDE
-https://github.com/tseemann/snippy
-https://github.com/Filter-Bubble/e2e-Dutch
-https://github.com/csdms/bmi
-https://github.com/mikaelLEROY/AxionNS_RayTracing
-https://github.com/weizhongli/cdhit
-https://github.com/maayane/catsHTM
-https://github.com/pyvisa/pyvisa
-https://github.com/ropensci/tesseract
-https://github.com/HajkD/LTRpred
-https://github.com/ELeeAstro/gCMCRT
-https://github.com/PCMSolver/pcmsolver
-https://github.com/nlesc-nano/swan
-https://github.com/robertwissing/EOS
-https://github.com/liulizhi1996/HPODNets
-https://github.com/ropensci/aorsf
-https://github.com/FluidityProject/fluidity
-https://github.com/maickrau/MBG
-https://github.com/abonaldi/TRECS
-https://github.com/andreasmang/claire
-https://github.com/qMRLab/qMRLab
-https://github.com/user29A/CCDLAB
-https://github.com/citiususc/veryfasttree
-https://github.com/orcasgit/python-fitbit
-https://github.com/GilbertLabUCSF/CanDI
-https://github.com/miguelzuma/hi_class_public
-https://github.com/PaulHancock/Robbie
-https://github.com/ERA-URBAN/netcdf2littler
-https://github.com/EC-Earth/ece2cmor3
+https://github.com/daissi/thesias
+https://github.com/ropensci/rrricanes
+https://github.com/ropensci/elastic
+https://github.com/Leo-Simpson/c-lasso
+https://github.com/will-rowe/groot
+https://github.com/s-abbas/robnptests
+https://github.com/atomneb/AtomNeb-py
+https://github.com/astroML/gatspy
+https://github.com/LindaNab/mecor
+https://github.com/pennsignals/chime
+https://github.com/xzackli/WignerFamilies.jl
+https://github.com/vortex-exoplanet/VIP
+https://github.com/DreamCloud-Project/McSim-Cycle-accurate-Xbar
+https://github.com/mattpitkin/psrqpy
+https://github.com/exoclime/THOR
+https://github.com/ropensci/jsonld
+https://github.com/jdhenshaw/SCOUSE
+https://github.com/arviz-devs/arviz
+https://github.com/SeamusClarke/BTS
+https://github.com/fzagaria/COpops
+https://github.com/ropensci/dbparser
+https://github.com/linqs/psl
+https://github.com/skendrew/midIR_sensitivity
+https://github.com/ropensci/cld2
+https://github.com/tvwenger/millennium-tap-query
+https://github.com/NLeSC/OCTSegmentation
+https://github.com/signaturescience/skater
+https://github.com/zachetienne/nrpytutorial
+https://github.com/AstarVienna/skycalc_ipy
+https://github.com/nhejazi/haldensify
+https://github.com/Starlink/hds-v5
+https://github.com/bcalden/ClusterPyXT
 https://github.com/Gabaldonlab/jloh
-https://github.com/lsds/LightSaber
+https://github.com/FSEC-Photovoltaics/pvrpm-lcoe
+https://github.com/PaulKuin/uvotpy
+https://github.com/jGetMove/jGetMove
+https://github.com/hetalang/heta-compiler
+https://github.com/BackofenLab/IntaRNA
+https://github.com/fair-data/fairdatapoint-client
+https://github.com/smeingast/PNICER
+https://github.com/DynaSlum/satsense
+https://github.com/CosmoStatGW/WF4Py
+https://github.com/erf-model/ERF
+https://github.com/musevlt/muse-psfr
+https://github.com/PedroBarbosa/VETA
+https://github.com/whybsml/whybsml
+https://github.com/AbbasAlameer/geoCancerPrognosticDatasetsRetriever
+https://github.com/ExeClim/Isca
+https://github.com/NKI-AI/direct
+https://github.com/TommasoRonconi/scampy
+https://github.com/donaldRwilliams/GGMnonreg
+https://github.com/zavolanlab/PAQR2
+https://github.com/Jesper-Karsten/MBASC
+https://github.com/jfowkes/pycutest
+https://github.com/TRI-AMDD/GMP-featurizer
+https://github.com/pcubillos/mc3
+https://github.com/ropensci/rgpdd
+https://github.com/rodluger/starry_process
+https://github.com/kimpenn/VERSE
+https://github.com/emrecdem/emo-spectre
+https://github.com/CGATOxford/UMI-tools
+https://github.com/xinglunju/pyAmor
+https://github.com/mkunimoto/LEO-vetter
+https://github.com/C-Briddon/SELCIE
+https://github.com/tribshms/tRIBS
+https://github.com/ropensci/riem
+https://github.com/seqan/flexbar
+https://github.com/GeodynamicWorldBuilder/WorldBuilder
+https://github.com/ernewton/tellrv
+https://github.com/willvousden/ptemcee
+https://github.com/KolmogorovLab/Severus
+https://github.com/hombit/freddi
+https://github.com/samb8s/PsrPopPy
+https://github.com/Yu-Group/veridical-flow
+https://github.com/NLeSC/Chemical-Analytics-Platform
+https://github.com/arshajii/ema
+https://github.com/ADThomas-astro/oxaf
+https://github.com/tmcclintock/cluster_toolkit
+https://github.com/CompNet/Renard
+https://github.com/nathanael-fijalkow/DeepSynth
+https://github.com/soerenslarsen/ISPy3
+https://github.com/soerendip/ms-mint
+https://github.com/the-rccg/hw2d
+https://github.com/rvaser/rampler
+https://github.com/ropensci/taxadb
+https://github.com/bfarr/kombine
+https://github.com/Gaius-Augustus/BRAKER
+https://github.com/tobiasrausch/lorax
+https://github.com/MultiQC/MultiQC
+https://github.com/LSSTDESC/descqa
+https://github.com/PaulMcMillan-Astro/GalPot
+https://github.com/ropensci/rb3
+https://github.com/xiaochuanle/MECAT2
+https://github.com/Schulik/aiolos
+https://github.com/dmnfarrell/snpgenie
+https://github.com/aringlis/afino_release_version
+https://github.com/LBNL-ETA/MSWH
+https://github.com/Jammy2211/PyAutoCTI
+https://github.com/IPIS-XieLei/CNTSeg
+https://github.com/sibyllema/Fast-Multiscale-Diffusion-on-Graphs
+https://github.com/JiangFangzhou/SIDM
+https://github.com/institut-de-genomique/HAPO-G
+https://github.com/svi-opensource/libics
+https://github.com/pysal/spopt
+https://github.com/damonge/CRIME
+https://github.com/esplint/IRACpm
+https://github.com/pierrebarbera/epa-ng
+https://github.com/cweniger/swordfish
+https://github.com/ggmichael/craterstats
+https://github.com/easybuilders/easybuild
+https://github.com/pmvreeswijk/ZOGY
+https://github.com/deeptools/py2bit
+https://github.com/byuflowlab/GXBeam.jl
+https://github.com/NIFTy-PPL/JAXbind
+https://github.com/magnuspalmblad/averageRegions
+https://github.com/damienmarsic/Parent-map
+https://github.com/JGCRI/plutus
+https://github.com/moritzobenauer/ProjectRaccoon
+https://github.com/aamedinburgh/igmtransmission
+https://github.com/iain-mcdonald/PySSED
+https://github.com/FCS-analysis/multipletau
+https://github.com/hpparvi/MuSCAT2_transit_pipeline
+https://github.com/shinichiroando/sashimi-w
+https://github.com/BenMql/coral
+https://github.com/lilyminium/psiresp
+https://github.com/ArneTillmann/AuDoLab
+https://github.com/Ensembl/ensembl-vep
+https://github.com/simonsobs/so_noise_models
+https://github.com/kendomaniac/rCASC
+https://github.com/Kaixhin/PlaNet
+https://github.com/bommert/stabm
+https://github.com/MorgansLab/OSCILOS_long
+https://github.com/wtraylor/modular_megafauna_model
+https://github.com/evolbioinfo/goalign
+https://github.com/argiopetech/base
+https://github.com/jkbonfield/io_lib
+https://github.com/grazianoucci/cosmic_variance
+https://github.com/danielemichilli/DM_phase
+https://github.com/samwaseda/mamonca
+https://github.com/Chandra-MARX/marxs
+https://github.com/sapearson/HSS
+https://github.com/ICRAR/shark
+https://github.com/LSSTDESC/NaMaster
+https://github.com/ridgelab/ExtRampOnline
+https://github.com/barentsen/k2flix
+https://github.com/HinLeung622/pipes_vis
+https://github.com/hongwanliu/DarkHistory
+https://github.com/jfalconbarroso/BAYES-LOSVD
+https://github.com/Eventdisplay/Eventdisplay
+https://github.com/devitocodes/pyrevolve
+https://github.com/planck-npipe/hillipop
+https://github.com/PyLops/pyproximal
+https://github.com/eldariont/svim
+https://github.com/mlower/rmnest
+https://github.com/tbep-tech/tbeptools
+https://github.com/davidechicco/geneExpressionFromGEO
+https://github.com/mjoppich/bioGUItools
+https://github.com/NLeSC-GO-common-infrastructure/marzipan
+https://github.com/BoevaLab/FREEC
+https://github.com/edwardoughton/itmlogic
+https://github.com/junkoda/sidm-nbody
+https://github.com/ywx649999311/EzTao
+https://github.com/piernik-dev/piernik
+https://github.com/ropensci/pathviewr
+https://github.com/yymao/abundancematching
+https://github.com/natir/rustyread
+https://github.com/epiforecasts/covidregionaldata
+https://github.com/sensein/etelemetry-client
+https://github.com/online-behaviour/machine-learning
+https://github.com/prioritizr/wdpar
+https://github.com/dalya/WeirdestGalaxies
+https://github.com/aertslab/pySCENIC
+https://github.com/ropensci/emld
+https://github.com/votca/xtp
+https://github.com/lbcb-sci/graphmap2
+https://github.com/VNNikolaidis/nnlib2Rcpp
+https://github.com/marschall-lab/panacus
+https://github.com/jarvist/Julia-Phonons
+https://github.com/canimus/cuallee
+https://github.com/myinxd/MCRGNet
+https://github.com/biobakery/MetaPhlAn
+https://github.com/Yu606/odyssey
+https://github.com/tanhevg/GpABC.jl
+https://github.com/kokron/anzu
+https://github.com/jessecambon/tidygeocoder
+https://github.com/pymatting/pymatting
+https://github.com/OpenMD/OpenMD
+https://github.com/hcdenbakker/sepia
+https://github.com/ropensci/workloopR
+https://github.com/rhdtownsend/gyre
+https://github.com/LINNAE-project/SFB-Annotator
+https://github.com/soichiro-hattori/unpopular
+https://github.com/astronomical-data-processing/RAPP
+https://github.com/justincfeng/PoMiN
+https://github.com/timkartar/RNAscape
+https://github.com/RasmussenLab/vamb
+https://github.com/dstndstn/astrometry.net
+https://github.com/barbagroup/geoclaw-landspill
+https://github.com/cog-imperial/entmoot
+https://github.com/PeterBartram/TES
+https://github.com/mattyowl/fitScalingRelation
+https://github.com/UAMCAntwerpen/LEADD
+https://github.com/AndresRTejedor/Mold
+https://github.com/Yingjie4Science/SDGdetector
+https://github.com/tessgi/tvguide
+https://github.com/ropensci/gistr
+https://github.com/cconroy20/fsps
+https://github.com/FabioRigamonti/BANG
+https://github.com/spicy-oil/hfs_fit
+https://github.com/barentsen/dave
+https://github.com/jranalli/solarspatialtools
+https://github.com/eead-csic-compbio/get_homologues
+https://github.com/reedacartwright/ngila
+https://github.com/bacpop/pp-sketchlib
+https://github.com/ratt-ru/rodrigues
+https://github.com/AMReX-Combustion/PeleLMeX
+https://github.com/PacificBiosciences/HiPhase
+https://github.com/HenrykHaniewicz/PSRVoid
+https://github.com/nwchemgit/nwchem
+https://github.com/fairtracks/omnipy_examples
+https://github.com/broadinstitute/picard
+https://github.com/silx-kit/pyFAI
+https://github.com/scikit-tda/DREiMac
+https://github.com/mariogrs/Simfast21
+https://github.com/dkirkby/gphist
+https://github.com/CodeEagle22/SIRITVIS
+https://github.com/pierrepo/autoclassweb
+https://github.com/galkintool/galkin
+https://github.com/chhylp123/hifiasm
+https://github.com/PMBio/spatialde2-paper
+https://github.com/bcgsc/abyss
 https://github.com/jcibanezm/DustCharge
-https://github.com/bwvdnbro/CMacIonize
-https://github.com/deeprob/ThioesteraseEnzymeSpecificity
-https://github.com/CRPropa/CRPropa2
-https://github.com/SamDuffield/bmm
-https://github.com/devries/analytic_infall
-https://github.com/gsuissa/hardCORE
-https://github.com/gtw2i/GA-Galaxy
-https://github.com/warrickball/tomso
-https://github.com/stevengiacalone/triceratops
-https://github.com/cblearn/cblearn
-https://github.com/dmentipl/plonk
-https://github.com/NuSpaceSim/nupyprop
-https://github.com/nanoporetech/flappie
-https://github.com/VarStarDetect/varstardetect
-https://github.com/soylentdeen/CounterPoint
-https://github.com/msaland/THInCR-Suite
-https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts
-https://github.com/cbottrell/RealSim
-https://github.com/ropenscilabs/allcontributors
-https://github.com/matchms/matchms
-https://github.com/arnauqb/qwind
-https://github.com/NSAPH-Software/GPCERF
-https://github.com/robdjeff/eagles
-https://github.com/arangrhie/merfin
-https://github.com/JGCRI/osiris
-https://github.com/Starlink/palpy
-https://github.com/dfm/exopop
-https://github.com/nespinoza/exonailer
-https://github.com/longfei8533/SDC
-https://github.com/Kuifje02/vrpy
-https://github.com/thegenemyers/DEXTRACTOR
-https://github.com/UcarLab/AMULET
-https://github.com/Illumina/akt
-https://github.com/ratt-ru/smops
-https://github.com/BioinfoUNIBA/REDItools2
-https://github.com/takafumi291/ESSENCE
+https://github.com/xiaotiand/FunFor
+https://github.com/iobio-zjut/IPTDFold
+https://github.com/pcubillos/repack
+https://github.com/pnnl/interflow
+https://github.com/ropensci/opencage
+https://github.com/biofold/ddgun
 https://github.com/bic-nirrh/precocity
-https://github.com/Rnazx/Scaling-Relations
-https://github.com/nboley/idr
-https://github.com/pysal/spopt
-https://github.com/ropensci/UCSCXenaTools
-https://github.com/bessagroup/f3dasm
-https://github.com/vedantchandra/wdtools
-https://github.com/DRMacIver/shrinkray
-https://github.com/kboone/parsnip
-https://github.com/ropensci/jsonvalidate
-https://github.com/eggplantbren/RMHB
-https://github.com/dolfin-adjoint/pyadjoint
-https://github.com/me-manu/gammaALPs
-https://github.com/sanger-pathogens/Fastaq
-https://github.com/david-mathews-1994/deltarice
-https://github.com/Singh-Lab/DeMaSk
-https://github.com/jjmccollum/teiphy
-https://github.com/BU-ISCIII/iSkyLIMS
-https://github.com/torluca/morphofit
-https://github.com/cmoestl/3DCORE
-https://github.com/eead-csic-compbio/get_homologues
-https://github.com/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP
-https://github.com/sina-cb/Tn-seqExplorer
-https://github.com/aspuru-guzik-group/funsies
-https://github.com/al-mcintyre/mCaller
-https://github.com/thejackal360/OpenPelt-Public
-https://github.com/rcsb/mmtf-python
-https://github.com/subisarkar/JexoSim
-https://github.com/samtools/samtools
-https://github.com/ahudde/greeks
-https://github.com/ngltr/sinaps
-https://github.com/GATB/simka
-https://github.com/HAWinther/FML
-https://github.com/MJCliffe/PASCal
-https://github.com/samtools/htslib
-https://github.com/obertscheiderfhwn/RTMsim
-https://github.com/genotoul-bioinfo/Binette
-https://github.com/sunpy/ndcube
-https://github.com/statgen/popscle
-https://github.com/rabrahm/zaspe
-https://github.com/iraf-community/iraf
-https://github.com/gear-genomics/tracy
-https://github.com/mkelley/calviacat
-https://github.com/wwood/kingfisher-download
-https://github.com/geospace-code/h5fortran
-https://github.com/zonca/dst
-https://github.com/ideasrule/platon
+https://github.com/UcarLab/AMULET
+https://github.com/ABSESpy/ABSESpy
+https://github.com/xenon-middleware/pyxenon
+https://github.com/exciting/excitingtools
+https://github.com/ckm3/Py-PDM
+https://github.com/LucaMalavolta/PyORBIT
+https://github.com/astrosupriyo/pyTANSPEC
+https://github.com/tpapp/MCMCDiagnostics.jl
+https://github.com/tpospisi/cdetools
+https://github.com/galsci/pysm
+https://github.com/Higgins00/TESS-Localize
+https://github.com/USEPA/nsink
+https://github.com/amberbiology/scribl
+https://github.com/swagnercarena/ovejero
+https://github.com/AndreyTavleev/DiscVerSt
+https://github.com/ishinder/EASTR
+https://github.com/MNiwano/Eclaire
+https://github.com/glass-dev/glass
+https://github.com/CEA-MetroCarac/pystack3d
+https://github.com/brainets/frites
 https://github.com/gilestrolab/pySolo
-https://github.com/davidebolo1993/VISOR
-https://github.com/sanger-pathogens/circlator
-https://github.com/exomishra/kobe
-https://github.com/alexfields/ORF-RATER
-https://github.com/RussellJurek/busy-function-fitting
-https://github.com/lpfworld/DMPNet
-https://github.com/tomasstolker/pycrires
-https://github.com/drzeeshanahmed/JWES-Visual
-https://github.com/bretthandrews/flexce
-https://github.com/xdf-modules/libxdf
-https://github.com/ulilautenschlager/crimp
-https://github.com/Hoohm/CITE-seq-Count
-https://github.com/JulianBMunoz/21cmvFAST
-https://github.com/FrancesBW/bellamy
-https://github.com/Someone789/galax2d
-https://github.com/jhparkastro/gpcal
-https://github.com/espnet/espnet
-https://github.com/ropensci/rcrossref
-https://github.com/ZhenjiangFan/DAG-deepVASE
-https://github.com/madysonb/EVA
-https://github.com/aibhleog/baryon-sweep
-https://github.com/SuLab/Wikidata-phenomizer
-https://github.com/vibbits/phyd3
-https://github.com/NKI-CCB/PRECISE
-https://github.com/astropy/halotools
-https://github.com/ajohnson-uoregon/llvm-project
-https://github.com/paumard/cubefit
-https://github.com/EdoardoCarlesi/cmbeasy
-https://github.com/mlarichardson/ramses2hsim
-https://github.com/cistib/origami
-https://github.com/JFFleming/RCFV_Reader
-https://github.com/Valdes-Tresanco-MS/NbThermo
-https://github.com/amerand/CANDID
-https://github.com/koide3/small_gicp
-https://github.com/morriscb/the-wizz
-https://github.com/KIT-MBS/pyrexMD
-https://github.com/DeaglanBartlett/symbolic_pofk
-https://github.com/Quantum-Dynamics-Hub/libra-code
-https://github.com/soichiro-hattori/unpopular
-https://github.com/facom/tidev
-https://github.com/ahmedmagds/GNUVID
-https://github.com/broadinstitute/CellBender
-https://github.com/bccp/nbodykit
-https://github.com/fripon/freeture
-https://github.com/ColemanRHarris/mxnorm
-https://github.com/snakemake/snakemake
-https://github.com/WatsonGroupTCD/J2suscep
-https://github.com/ialbert/genescape-central
-https://github.com/jydu/physamp
-https://github.com/kuanrongchan/COVID19-severity
-https://github.com/NLeSC/scriptcwl
-https://github.com/kcleal/gw
-https://github.com/milkschen/leviosam2
+https://github.com/iipharma/pharmamind-molminer
+https://github.com/SegataLab/lefse
+https://github.com/pmelchior/pygmmis
+https://github.com/cheginit/HyRiver
+https://github.com/andresmegias/radex-python
+https://github.com/edgardomortiz/Captus
+https://github.com/relipmoc/skewer
+https://github.com/ropensci/gitignore
+https://github.com/astrosmili/smili
+https://github.com/SeamusClarke/FragMent
+https://github.com/ICAMS/strucscan
+https://github.com/bxlab/bx-python
+https://github.com/dkoslicki/TAMPA
+https://github.com/RosettaCommons/RFDesign
+https://github.com/rroyaute/h2_breeders_equation
+https://github.com/michaeltouati/ESVM
+https://github.com/cbio-astar-tools/GeneCloudOmics
+https://github.com/ivastar/clear
+https://github.com/CEED/libCEED
+https://github.com/HERA-Team/hera_opm
+https://github.com/FZJ-PGI-12/QAOA.jl
+https://github.com/r3w0p/bobocep
+https://github.com/Yomguithereal/talisman
+https://github.com/cov-lineages/pangoLEARN
+https://github.com/wdecoster/nanoQC
+https://github.com/chervias/DustFilaments
+https://github.com/ropensci/spiro
+https://github.com/OpenBioLink/Explorer
+https://github.com/ParBLiSS/FastANI
+https://github.com/linnarsson-lab/loompy
+https://github.com/KeplerGO/pyke
+https://github.com/dib-lab/TheGreatGenotyper
+https://github.com/fcastagna/preprofit
+https://github.com/xastprl/DarsakX
+https://github.com/genome/bam-readcount
+https://github.com/EliseJ/astroABC
+https://github.com/JuliaMatrices/BandedMatrices.jl
+https://github.com/avigan/pyZELDA
+https://github.com/wdecoster/nanofilt
+https://github.com/COSIMA/regional-mom6
+https://github.com/JoeMcEwen/FAST-PT
+https://github.com/brsynth/rp2paths
+https://github.com/fair-workflows/NanopubJL
+https://github.com/FitSNAP/FitSNAP
+https://github.com/user29A/JPFITS
+https://github.com/annagraff/densify
+https://github.com/DeepRank/pdb2sql
+https://github.com/ropensci/geonames
+https://github.com/mfruzan/HaploMaker
+https://github.com/n-claes/legolas
+https://github.com/rrwick/Deepbinner
+https://github.com/ropensci/pixelclasser
+https://github.com/hknd23/idcempy
+https://github.com/myfang2021/VIPPID
+https://github.com/AarhusCosmology/prospect_public
+https://github.com/lorenzo-rovigatti/oxDNA
+https://github.com/blebon/directChillFoam
+https://github.com/ropensci/rnpn
+https://github.com/hover2pi/sedkit
+https://github.com/lkmklsmn/DrivAER
+https://github.com/cmbant/getdist
+https://github.com/erikhom/aida
+https://github.com/radifar/PyPLIF-HIPPOS
+https://github.com/Astro-Sean/autophot
+https://github.com/wjakethompson/measr
+https://github.com/nlesc-nano/CAT
+https://github.com/justinread/gravsphere
+https://github.com/snystrom/memes
+https://github.com/tkzeng/Pangolin
+https://github.com/ExObsSim/Rapoc-public
+https://github.com/darthoctopus/reggae
+https://github.com/oliveirara/polyMV
+https://github.com/blackrim/phyutility
+https://github.com/farhanferoz/MultiNest
+https://github.com/OP2/PyOP2
+https://github.com/hpparvi/opents
+https://github.com/kbarbary/extinction
+https://github.com/saeyslab/PeacoQC
+https://github.com/ulelab/ultraplex
+https://github.com/ratt-ru/montblanc
+https://github.com/ropensci/suppdata
+https://github.com/bjmorgan/py-sc-fermi
+https://github.com/atakan/KeplerSolver
+https://github.com/ziyewang/MetaBinner
+https://github.com/Single-Cell-Graph-Learning/scSGL
+https://github.com/gigjozsa/tirific
+https://github.com/giuspugl/MCMole3D
+https://github.com/artefactory/choice-learn
+https://github.com/fmichel/MaDKit
+https://github.com/vicruiser/3Dmapper
+https://github.com/aprsa/ebai
+https://github.com/wdecoster/nanomath
+https://github.com/AMReX-Astro/Nyx
+https://github.com/RETURN-project/BenchmarkRecovery
+https://github.com/hsinnan75/MapCaller
+https://github.com/arvados/arvados
+https://github.com/cdw9bf/CompactGroup
+https://github.com/FofanovLab/mtsv_tools
+https://github.com/0xCoto/Virgo
+https://github.com/afarahi/kllr
+https://github.com/brentp/smoove
+https://github.com/skendrew/milkywayproject_triggering
+https://github.com/SPARC-FAIR-Codeathon/aqua
+https://github.com/ropensci/rredlist
+https://github.com/bayesn/bayesn
+https://github.com/ziotom78/libpolycomp
+https://github.com/jaimedelacruz/stic
+https://github.com/ropensci/katex
+https://github.com/fkiwy/AstroToolBox
 https://github.com/AstraZeneca/kallisto
-https://github.com/VirtualPlantLab/PlantSimEngine.jl
-https://github.com/GATB/gatb-core
-https://github.com/mmahmoudian/sivs
-https://github.com/3D-e-Chem/3D-e-Chem-VM
-https://github.com/abschneider/StrainHub
-https://github.com/vcflib/tabixpp
-https://github.com/OrlandoLam/SAMT
-https://github.com/biomedia-mira/drop2
-https://github.com/TommyJones/tidylda
-https://github.com/awsteiner/bamr
-https://github.com/PDB-REDO/density-fitness
-https://github.com/aasensio/hazel
-https://github.com/bow/crimson
-https://github.com/nanograv/enterprise
-https://github.com/rdpstaff/AlignmentTools
-https://github.com/microbioinformatic/Co-PATHOgenex
-https://github.com/desmid/mview
-https://github.com/LiuJJ0327/CCPE
-https://github.com/giuspugl/fgcluster
-https://github.com/kircherlab/cfDNA-UniFlow
-https://github.com/ropensci/rdryad
-https://github.com/CouncilDataProject/cookiecutter-cdp-deployment
-https://github.com/ropensci/stplanr
-https://github.com/CornellLabofOrnithology/auk
+https://github.com/landlab/landlab
+https://github.com/djgroen/MPWide
+https://github.com/dgerosa/gwdet
+https://github.com/KerryAM-R/ggVolcanoR
+https://github.com/biocircuits/bioscrape
+https://github.com/nebblu/ReACT
+https://github.com/SWE-UniStuttgart/Qlunc
+https://github.com/ziotom78/dacapo_calibration
 https://github.com/EcoJulia/Microbiome.jl
-https://github.com/ropensci/timefuzz
-https://github.com/Merck/pkglite
+https://github.com/rasg-affiliates/21cmSense
+https://github.com/sib-swiss/glittr
+https://github.com/HCGB-IGTP/XICRA
+https://github.com/davidebolo1993/TRiCoLOR
+https://github.com/n8thangreen/BCEA
+https://github.com/ropensci/weathercan
+https://github.com/adithirgis/pollucheck
+https://github.com/Bonfanti88/MCMCI
+https://github.com/kateharborne/SimSpin
+https://github.com/biosimulations/Biosimulations
+https://github.com/skyfielders/python-skyfield
+https://github.com/HEML/HEML
+https://github.com/toshiyan/cmblensplus
+https://github.com/FCS-analysis/PyCorrFit
+https://github.com/pcubillos/rate
+https://github.com/UCBerkeleySETI/blimpy
+https://github.com/biolab-unige/nifti2dicom
+https://github.com/pepkit/geofetch
+https://github.com/ramadatta/CPgeneProfiler
+https://github.com/EdwardBerman/shopt
+https://github.com/eEcoLiDAR/laserchicken
+https://github.com/danielemichilli/SpS
+https://github.com/ratt-ru/breizorro
+https://github.com/FluidityProject/fluidity
+https://github.com/jeffdaily/parasail-python
+https://github.com/ropensci/treebase
+https://github.com/kiyo-masui/bitshuffle
+https://github.com/mtazzari/galario
+https://github.com/alejostark/phase_space_cosmo_fisher
+https://github.com/ImperialCollegeLondon/UVLM
+https://github.com/Sarc-Graph/sarcgraph
+https://github.com/KVSlab/VaMPy
+https://github.com/ropensci/nasapower
+https://github.com/r-lib/gert
+https://github.com/bbbbbbzhou/MDPET
+https://github.com/Music-and-Culture-Technology-Lab/omnizart
+https://github.com/asgr/Rwcs
+https://github.com/chasmani/piecewise-regression
+https://github.com/brainglobe/bg-atlasapi
+https://github.com/StingraySoftware/HENDRICS
+https://github.com/askap-craco/CELEBI
+https://github.com/sterinaldi/FIGARO
+https://github.com/spjuhel/BoARIO
+https://github.com/markusbonse/applefy
+https://github.com/ropensci/rperseus
+https://github.com/lys-devel/lys
+https://github.com/seqcode/allo
+https://github.com/wajidarshad/ESIDE
+https://github.com/parsotat/BatAnalysis
+https://github.com/ropensci/getCRUCLdata
+https://github.com/ropensci/skimr
+https://github.com/ahmedmoustafa/JAligner
+https://github.com/jakeret/abcpmc
+https://github.com/JacksonBurns/astartes
+https://github.com/biofold/PhD-SNPg
+https://github.com/Trovemaster/TROVE
+https://github.com/chainsawriot/sweater
+https://github.com/uwsbel/low-fidelity-dynamic-models
+https://github.com/odlomax/spamcart-dev
+https://github.com/keatonb/TESS_PRF
+https://github.com/NoahSailer/FishLSS
+https://github.com/mtakahiro/gsf
+https://github.com/GalSim-developers/GalSim
+https://github.com/aztekas-code/aztekas-main
+https://github.com/mh-skjelvareid/synaptus
+https://github.com/toddy15/medicalterms
+https://github.com/xavierdidelot/ClonalFrameML
+https://github.com/joshspeagle/dynesty
+https://github.com/atzberg/mlmod
+https://github.com/tvwenger/tmbidl
+https://github.com/MIT-STARLab/deconfuser
+https://github.com/Narayana-Rao/PolSAR-tools
 https://github.com/cdanielmachado/reframed
-https://github.com/esheldon/ngmix
-https://github.com/pmelchior/scarlet
-https://github.com/slzarate/parliament2
-https://github.com/masoncarney/stepped_luneburg
-https://github.com/phelelani/nf-rnaSeqMetagen
-https://github.com/leishenggit/CircleBase
-https://github.com/ImperialCollegeLondon/ICLOCS
-https://github.com/ropensci/rfema
-https://github.com/ropensci/rbhl
-https://github.com/mgckind/easyaccess
-https://github.com/babinyurii/recan
-https://github.com/jonzink/EDI_Vetter_unplugged
-https://github.com/lh3/bedtk
-https://github.com/RosettaCommons/RFDesign
-https://github.com/smsharma/mining-for-substructure-lens
-https://github.com/EcoJulia/EcologicalNetworks.jl
-https://github.com/ucam-department-of-psychiatry/camcops
-https://github.com/MaximeWack/viroCapt
-https://github.com/txopen/histoc
-https://github.com/agreenbaum/gsgs
-https://github.com/David-McKenna/udpPacketManager
-https://github.com/mwalmsley/zoobot
-https://github.com/zhanglabtools/CASAVA
+https://github.com/tdrobinson/coronagraph_noise
+https://github.com/santeripuranen/SpydrPick
+https://github.com/garrelt/C2-Ray1D
+https://github.com/CBIIT-CGBB/gcMECM
+https://github.com/franpoz/SHERLOCK
+https://github.com/KeplerGO/k2mosaic
+https://github.com/mgckind/SparsePz
+https://github.com/WelbornGroup/ELECTRIC
+https://github.com/bccp/nbodykit
+https://github.com/magnuspalmblad/addFeatures
+https://github.com/eWaterCycle/jupyterlab_thredds
+https://github.com/Kambrian/SubGen
+https://github.com/AFD-Illinois/ebhlight
+https://github.com/nh13/DWGSIM
+https://github.com/marcelauliano/MitoHiFi
+https://github.com/gt1/bambamc
+https://github.com/wdecoster/nanopack
+https://github.com/Biomedical-Imaging-Group/Steer-n-Detect
+https://github.com/jnktsj/DNApi
+https://github.com/samuelefiorini/tangle
+https://github.com/lsncibb/microbiomeGWAS
+https://github.com/arq5x/poretools
+https://github.com/pkgw/pwkit
+https://github.com/pysal/pysal
+https://github.com/VChristiaens/MINDS
+https://github.com/lorenaacuna/GASTLI
+https://github.com/padster/pyNeuroTrace
+https://github.com/mayuresh159/starsense_algorithms
+https://github.com/v-morello/clfd
+https://github.com/toros-astro/astroalign-legacy
+https://github.com/sidiwang/snSMART
+https://github.com/gerthmicha/wolbachia-mlst
+https://github.com/thom991/MSIQuickView
+https://github.com/ruiying-ocean/cgeniepy
+https://github.com/wangsiwei2010/FPMVS-CAG
+https://github.com/atfrank/PyShifts
+https://github.com/martin3141/spant
+https://github.com/phac-nml/biohansel
+https://github.com/sstadick/perbase
+https://github.com/jydu/maffilter
+https://github.com/webbjj/clustertools
+https://github.com/bioexcel/biobb_wf_flexdyn
+https://github.com/paucablop/chemotools
+https://github.com/llt1836/TE-HI-GCN
+https://github.com/SandyYuan/GRAND-HOD
+https://github.com/jordanflitter/21cmFirstCLASS
+https://github.com/s4hts/HTStream
+https://github.com/sdnjly/WSDL-AD
+https://github.com/qiime2/q2-vsearch
+https://github.com/sdss/marvin
+https://github.com/oschwengers/bakta
+https://github.com/ni1o1/transbigdata
+https://github.com/dunhamlab/PacRAT
+https://github.com/Onogi/VIGoR
+https://github.com/csabiu/kstat
+https://github.com/mariapetro/LeHaMoC
+https://github.com/ruta-k/uGMRT-pipeline
+https://github.com/yuhaoran/CUBE
+https://github.com/broadinstitute/Drop-seq
+https://github.com/hyperopt/hyperopt
+https://github.com/devsim/devsim
+https://github.com/casacore/casacore
+https://github.com/alphaparrot/ExoPlaSim
+https://github.com/esandford/EightBitTransit
+https://github.com/chanzuckerberg/czid-dag
+https://github.com/Cristianetaniguti/Reads2Map
+https://github.com/ropensci/ritis
+https://github.com/ImperialCollegeLondon/research-software-directory
+https://github.com/ropensci/landscapetools
 https://github.com/nayu0419/stMMR
-https://github.com/OBrink/RanDepict
-https://github.com/tomasstolker/species
-https://github.com/andersen-lab/ivar
-https://github.com/barentsen/dave
-https://github.com/tbep-tech/tbeptools
-https://github.com/GRChombo/GRChombo
-https://github.com/ropensci/clifro
-https://github.com/jdiasn/lidarSuit
-https://github.com/4pisky/fourpisky-core
-https://github.com/twinl/website
-https://github.com/tseemann/prokka
-https://github.com/ORNL/tx2
-https://github.com/ropensci/magick
-https://github.com/Zstone19/pypetal
-https://github.com/FourierFlows/GeophysicalFlows.jl
-https://github.com/OpenGene/fastv
-https://github.com/spokenlanguage/platalea
-https://github.com/eXtremeGravityInstitute/QuickCBC
-https://github.com/JonasRieger/ldaPrototype
-https://github.com/jeffdaily/parasail
-https://github.com/Multiversario/satcand
-https://github.com/ExaScience/elprep
-https://github.com/SNEWS2/snewpy
-https://github.com/ropensci-review-tools/roreviewapi
-https://github.com/zhongqiu1245/CCS-Net
-https://github.com/ropensci/wellknown
-https://github.com/Chenmi0619/GALMoss
-https://github.com/fair-workflows/nanopub
-https://github.com/cmayer/BaitFisher-package
-https://github.com/Astroua/SCIMES
+https://github.com/jeremysanders/spex_to_xspec
+https://github.com/SandoghdarLab/PiSCAT
+https://github.com/mfem/mfem
+https://github.com/dylancromer/maszcal
+https://github.com/ictr/covid19-outbreak-simulator
+https://github.com/ComtekAdvancedStructures/cmstatr
+https://github.com/paulhjkelly/taskgraph-metaprogramming
+https://github.com/biomed-AI/GraphBepi
+https://github.com/fkoehlin/montepython_2cosmos_public
+https://github.com/LucaJRossi/NIGO
+https://github.com/lmfit/lmfit-py
+https://github.com/tbronzwaer/raptor
+https://github.com/leotac/joypy
+https://github.com/gotsunami/Youpi
+https://github.com/jianhuupenn/SpaGCN
+https://github.com/ropensci/paleobioDB
+https://github.com/smith-chem-wisc/ProteaseGuru
+https://github.com/rcsb/mmtf-python
+https://github.com/candYgene/pbg-ld
+https://github.com/BackofenLab/Peakhood
+https://github.com/Kushaalkumar-pothula/FLARE
+https://github.com/andersen-lab/Freyja
+https://github.com/JulioHC00/PEPITA
+https://github.com/montilab/nf-gwas-pipeline
+https://github.com/marbl/Winnowmap
+https://github.com/abaleato/CARDiAC
+https://github.com/chadagreene/Tide-Model-Driver
+https://github.com/PabloVD/HaloGraphNet
+https://github.com/oliverphilcox/PolyBin3D
+https://github.com/dianna-ai/dianna
+https://github.com/rochoa85/NTDHealth_Forms
+https://github.com/jonaselgammal/GPry
+https://github.com/holmescao/ANTS_marking_and_analysis_tools
+https://github.com/FireflySpectra/firefly_release
+https://github.com/rajeshrinet/pystokes
+https://github.com/carronj/LensIt
+https://github.com/aprsa/dips
+https://github.com/tud-hri/travia
+https://github.com/tomoyukif/MCPtaggR
+https://github.com/CisnerosResearch/LICHEM
+https://github.com/MichielCottaar/velbin
+https://github.com/fairdataihub/SPARClink
+https://github.com/astro-informatics/ssht
+https://github.com/GreiffLab/immuneREF
+https://github.com/micahvista/MAMnet
+https://github.com/wouterpeere/GHEtool
+https://github.com/NLESC-JCER/EigenCuda
+https://github.com/espnet/espnet
+https://github.com/sosl/H-FISTA
+https://github.com/genostats/LowKi
+https://github.com/davidharvey1986/pyRRG
+https://github.com/dokester/BayesicFitting
 https://github.com/mrteetoe/HOI
-https://github.com/Zilong-Li/PCAone
-https://github.com/jarvist/Julia-Phonons
-https://github.com/PixelgenTechnologies/pixelator
+https://github.com/mkplummer/Imber
+https://github.com/rpetit3/fastq-dl
+https://github.com/brentp/goleft
+https://github.com/prmunday/Immunolyser
+https://github.com/tinglabs/scAIDE
+https://github.com/ThibaultFillion/strengths
+https://github.com/MOSAICS-NIH/MOSAICS
+https://github.com/cblakeastro/intensitypower
+https://github.com/3D-e-Chem/knime-python-node-archetype
+https://github.com/ethicsai/ethical-smart-grid
+https://github.com/gxiaolab/scAllele
+https://github.com/wdecoster/nanostat
+https://github.com/odelaneau/shapeit5
+https://github.com/gramos/imagetooth
+https://github.com/tseemann/snippy
+https://github.com/clauswilke/PeptideBuilder
+https://github.com/LSSTDESC/Spectractor
+https://github.com/haoharryfeng/NeuCA
+https://github.com/gmzsebastian/FLEET
+https://github.com/COMBINE-lab/RapMap
+https://github.com/brian-team/brian2
+https://github.com/segasai/q3c
+https://github.com/daniel-muthukrishna/astrodash
+https://github.com/medvedevgroup/TwoPaCo
+https://github.com/PieterjanRobbe/GaussianRandomFields.jl
+https://github.com/czbiohub/cerebra
+https://github.com/uclchem/Chemulator
+https://github.com/3D-e-Chem/knime-molviewer
+https://github.com/morisUtokyo/uTR
+https://github.com/BarquistLab/mason_paper
+https://github.com/zhouzilu/DENDRO
+https://github.com/nlesc-nano/ceiba-cli
+https://github.com/mslonina/Mechanic
+https://github.com/jfoster17/extinction-distances
+https://github.com/EmmanuelSchaan/HaloGen
+https://github.com/ImperialCollegeLondon/sap-voicebox
+https://github.com/rmjarvis/Piff
+https://github.com/aL3x-O-o-Hung/CAT-Net
+https://github.com/erling6232/imagedata
+https://github.com/umbralcalc/nfield
+https://github.com/jean-pierreBoth/gsearch
+https://github.com/ncbi/BAMscale
+https://github.com/ropensci/rfisheries
+https://github.com/musoke/UltraDark.jl
+https://github.com/metagentools/GraphBin
+https://github.com/jobovy/segueSelect
+https://github.com/LSSTDESC/snmachine
+https://github.com/exosports/BART
+https://github.com/mne-tools/mne-python
+https://github.com/zarr-developers/zarr-python
+https://github.com/tomasstolker/pycrires
 https://github.com/MD-Studio/cerulean
-https://github.com/TingMAC/FrMLNet
-https://github.com/samuelefiorini/tangle
-https://github.com/VChristiaens/special
+https://github.com/HITS-AIN/GPCC.jl
+https://github.com/dgarrimar/sqtlseeker2-nf
+https://github.com/KathrynJones1/catwoman
+https://github.com/ropensci/dittodb
+https://github.com/uw-comphys/shapelets
+https://github.com/pwry/lextes
+https://github.com/alawryaguila/multi-view-AE
+https://github.com/sanger-pathogens/assembly-stats
+https://github.com/WorkflowConversion/CTDConverter
+https://github.com/weecology/retriever
+https://github.com/COMBINE-lab/alevin-fry
+https://github.com/guilledufort/EnanoFASTQ
+https://github.com/JFFleming/RCFV_Reader
+https://github.com/jgagneastro/CoMover
+https://github.com/MetaCell/scicrunch-antibody-registry
+https://github.com/PacificBiosciences/minorseq
+https://github.com/nicokurtovic/SIMIO
+https://github.com/CenterForMedicalGeneticsGhent/Hopla
+https://github.com/eWaterCycle/setup-grpc
+https://github.com/OpenEnergyPlatform/open-MaStR
+https://github.com/lsds/TaLoS
+https://github.com/altjerue/paramo
+https://github.com/GalagaBits/JWST-FGS-Spelunker
+https://github.com/weizhouUMICH/SAIGE
+https://github.com/gdalle/HiddenMarkovModels.jl
+https://github.com/realfastvla/rfpipe
+https://github.com/MJCliffe/PASCal
+https://github.com/ruizengalways/FOD-Net
+https://github.com/ropensci/excluder
+https://github.com/Markusjsommer/BalrogCPP
+https://github.com/myrafproject/myrafproject
+https://github.com/rdpstaff/AlignmentTools
+https://github.com/Julian/jsonschema
+https://github.com/Li-Yangyang/LOTUS
+https://github.com/tatekawa-astron/3LPT-init
+https://github.com/astro-informatics/flag-archive
+https://github.com/indrops/indrops
+https://github.com/UM-KevinHe/surtvep
+https://github.com/symmy596/Polypy
+https://github.com/NorwegianVeterinaryInstitute/ALPPACA
+https://github.com/genouest/biomaj-cli
+https://github.com/wen-jams/bsavi
+https://github.com/vibbits/phyd3
+https://github.com/johnschwenck/bp
+https://github.com/nialov/fractopo
+https://github.com/ylab-hi/ScanITD
+https://github.com/sczesla/PyAstronomy
+https://github.com/lydialucchesi/Vizumap
+https://github.com/PaulRitsche/DL_Track_US
+https://github.com/linuxscout/pyarabic
+https://github.com/DebduttaPaul/luminosity_function_of_lGRBs
+https://github.com/GWang2022/iGDP
+https://github.com/AStcherbinine/omegapy
+https://github.com/metagenopolis/CroCoDeEL
+https://github.com/villrv/SuperRAENN
+https://github.com/xenon-middleware/osmium
+https://github.com/USNavalResearchLaboratory/eispac
+https://github.com/raspishake/rsudp
+https://github.com/rpoleski/MulensModel
+https://github.com/mpokorny/vysmaw
+https://github.com/theosanderson/chronumental
+https://github.com/ridgelab/rampAtlas
+https://github.com/mbonav/Exo_DMC
+https://github.com/SteveMacenski/slam_toolbox
+https://github.com/tibordome/cosmic_profiles
+https://github.com/CHRF-Genomics/Paratype
+https://github.com/sherpa-deproject/deproject
+https://github.com/LabLaskin/MSIGen
+https://github.com/arnauqb/Qwind.jl
+https://github.com/rodluger/planetplanet
 https://github.com/bmorris3/aesop
-https://github.com/Tomcxf/FASTdRNA
-https://github.com/dfm/ketu
-https://github.com/FabioRigamonti/BANG
-https://github.com/EnricoCorsaro/FAMED
-https://github.com/bd-j/sedpy
-https://github.com/jessecambon/tidygeocoder
-https://github.com/CEA-MetroCarac/fitspy
-https://github.com/NLeSC/baklava
-https://github.com/DreamCloud-Project/AMALTHEA-SimGrid
-https://github.com/ageller/Firefly
-https://github.com/stefanoMP/massiveGST
-https://github.com/musevlt/muse-psfr
-https://github.com/ttgump/scDHMap
-https://github.com/drphilmarshall/Pangloss
-https://github.com/tcallister/autoregressive-bbh-inference
-https://github.com/ropensci/internetarchive
-https://github.com/tensorly/viz
-https://github.com/Martindelosrios/cosmic-kite
-https://github.com/tesselle/aion
-https://github.com/thraraujo/pysymmpol
-https://github.com/temken/DaMaSCUS-CRUST
-https://github.com/lastz/lastz
+https://github.com/danielenricocahall/elephas
+https://github.com/ntveem/sterile-dm
+https://github.com/rahulshah1397/LADDER
+https://github.com/ChenfuShi/HiChIP_peaks
+https://github.com/churchmanlab/genewalk
+https://github.com/CosmoTool/ECLIPSE
+https://github.com/simonsobs/mnms
+https://github.com/mrc-ide/sircovid
+https://github.com/watts-dev/watts
+https://github.com/Beuth-Erdelt/DBMS-Benchmarker
+https://github.com/FelixKrueger/TrimGalore
+https://github.com/mraveri/tensiometer
+https://github.com/alexrhowe/APOLLO
+https://github.com/DingshanDeng/DiskMINT
+https://github.com/nespinoza/mc-spam
+https://github.com/fenderglass/Ragout
+https://github.com/MichielsenM/FOAM
+https://github.com/MelanieKahl/MechAnalyze
+https://github.com/gdefazio/kMetaShot
+https://github.com/maxbernyk/lightcone
+https://github.com/coder/code-server
+https://github.com/pyccel/pyccel
+https://github.com/cochran4/GEMB
+https://github.com/dynamicslab/pysindy
+https://github.com/ideasrule/platon
+https://github.com/megbedell/wobble
+https://github.com/pinellolab/CRISPResso2
+https://github.com/bolverk/huji-rich
+https://github.com/pydemull/activAnalyzer
+https://github.com/gheald/rmclean
+https://github.com/ZacharyJia/opsdn
+https://github.com/babelomics/impuSARS
+https://github.com/ANNACRNN/REBOUND_fragmentation
+https://github.com/PacificBiosciences/pbcopper
+https://github.com/XGI-MSU/PyIMRPhenomD
+https://github.com/jo276/EvapMass
+https://github.com/vallima/PRyMordial
+https://github.com/bertrandplez/Turbospectrum_NLTE
+https://github.com/asgr/NFWdist
+https://github.com/dellytools/delly
+https://github.com/vimc/vaultr
+https://github.com/ropensci-org/roblog
+https://github.com/NLeSC/PattyVis
+https://github.com/pinellolab/CRISPRitz
+https://github.com/ropensci/qpdf
+https://github.com/PDB-REDO/libcifpp
+https://github.com/Nico-Curti/rFBP
+https://github.com/deweylab/RSEM
+https://github.com/slzarate/parliament2
+https://github.com/jdeast/EXOFASTv2
+https://github.com/JuliaMatrices/BlockBandedMatrices.jl
+https://github.com/dstndstn/tractor
+https://github.com/asgr/ProFuse
+https://github.com/ropensci/rdefra
+https://github.com/damar-wicaksono/uqtestfuns
+https://github.com/ropensci/mregions
+https://github.com/AndreNicolasChene/DRAGRACES
+https://github.com/nlesc-nano/Moka
+https://github.com/EOSC-LOFAR/lofar-ld
+https://github.com/brentp/hts-nim-tools
+https://github.com/meta-logic/sequoia
+https://github.com/BiodataAnalysisGroup/UMIc
+https://github.com/citiususc/BigSeqKit
+https://github.com/nextgenusfs/funannotate
+https://github.com/MASILab/pyPheWAS
 https://github.com/ClaudioZandonella/PRDA
-https://github.com/cwru-pat/cmb-multipole_vectors
-https://github.com/CederGroupHub/sparse-lm
-https://github.com/travisseymour/EPICpy
-https://github.com/Cosmoglobe/zodipy
-https://github.com/miguelcarcamov/csromer
-https://github.com/mbursa/disk-models
-https://github.com/bc3LC/gcamreport
-https://github.com/sanger-pathogens/pymummer
-https://github.com/PEREGRINE-GW/saqqara
-https://github.com/carlosborca/CrystaLattE
-https://github.com/genomehubs/goat-cli
-https://github.com/oliverphilcox/Spectra-Without-Windows
-https://github.com/ABard0/MDGF-MCEC
-https://github.com/ropensci/slopes
-https://github.com/matchms/ms2deepscore
-https://github.com/pnnl/HyperNetX
-https://github.com/ropensci-org/rotemplate
-https://github.com/davidemms/OrthoFinder
-https://github.com/toddy15/medicalterms
-https://github.com/EhsanGharibNezhad/TelescopeML
-https://github.com/JulianZDing/UniMAP
-https://github.com/freemed/freeshim
-https://github.com/ylab-hi/ScanITD
-https://github.com/astro-informatics/DarkMappy
-https://github.com/javicarron/mtneedlet
-https://github.com/AstroChem/VISIBLE
-https://github.com/saopicc/DDFacet
-https://github.com/refresh-bio/Whisper
-https://github.com/tamarervin/SolAster
-https://github.com/candebellavita/vkompth
-https://github.com/BioGenies/AMPBenchmark
-https://github.com/LSSTDESC/chroma
-https://github.com/zonca/python-qucs
-https://github.com/oncoray/mirp
-https://github.com/CGATOxford/UMI-tools
-https://github.com/pelican/pelican
-https://github.com/ryansmcgee/seirsplus
-https://github.com/daiqile96/OTTERS_paper
-https://github.com/xfcui/onn4arg
-https://github.com/nexml/nexml.java
+https://github.com/cdslaborg/paramonte
+https://github.com/sethspjohnso/satmc
+https://github.com/eucp-project/storyboards
+https://github.com/kyleaoman/martini
+https://github.com/bbfrederick/stabilitycalc
+https://github.com/Starlink/starjava
+https://github.com/changhoonhahn/pySpectrum
+https://github.com/doriancazeneuve/ODNet
+https://github.com/JGCRI/stitches
+https://github.com/mzytnicki/srnaMapper
+https://github.com/zclaytor/butterpy
+https://github.com/ropensci/lingtypology
+https://github.com/ExObsSim/ExoRad2-public
+https://github.com/DEIB-GECO/ReRa
+https://github.com/samtools/bcftools
+https://github.com/eggplantbren/RJObject
+https://github.com/metagenlab/MeSS
+https://github.com/ropensci/helminthR
+https://github.com/codemeleon/seqPanther
+https://github.com/MesserLab/SLiM
+https://github.com/wpb-astro/MCSED
+https://github.com/seshnadathur/Revolver
+https://github.com/astropy/ccdproc
+https://github.com/coccoinomane/zelda
+https://github.com/bradkav/BlackHolesDarkDress
+https://github.com/v-morello/iqrm
+https://github.com/richteague/disksurf
+https://github.com/reznik-lab/MIRTH
+https://github.com/JEFworks-Lab/STdeconvolve
+https://github.com/aakepley/autobox
+https://github.com/ropensci/ruODK
+https://github.com/phylo42/RAPPAS
+https://github.com/kutaslab/fitgrid
+https://github.com/pysam-developers/pysam
+https://github.com/coolneighbors/unWISE-verse
+https://github.com/wlloyduw/ContainerProfiler
+https://github.com/DSIMB/MEDUSA
+https://github.com/phillippro/pexo
+https://github.com/nhejazi/txshift
+https://github.com/hyattpd/Prodigal
+https://github.com/gabraham/flashpca
+https://github.com/LQYoLH/CnnCrispr
+https://github.com/jhayer/baargin
+https://github.com/danhey/echelle
+https://github.com/ICB-DCM/pyABC
+https://github.com/seclark/RHT
+https://github.com/phineasng/DECODE
+https://github.com/ejikeugba/gofcat
+https://github.com/copasi/basico
+https://github.com/fogellab/multiWGCNA
+https://github.com/ucam-department-of-psychiatry/camcops
+https://github.com/ryneches/SuchTree
+https://github.com/MingBit/PySCNet
+https://github.com/artis-mcrt/artis
+https://github.com/igmhub/picca
+https://github.com/NLeSC/python-template
+https://github.com/eblur/dust
+https://github.com/NctuICLab/PredCRP
+https://github.com/Peppags/CNN-SVR
+https://github.com/eWaterCycle/grpc4bmi
+https://github.com/ppsp-team/PyNM
+https://github.com/grahambell/pymoc
+https://github.com/rega-cev/virulign
+https://github.com/ModellingWebLab/chaste-codegen
+https://github.com/dolfin-adjoint/pyadjoint
+https://github.com/eucp-project/atlas
+https://github.com/cosmodesi/pycorr
+https://github.com/YenWenWang/HapDipKinship
+https://github.com/jiffyclub/palettable
+https://github.com/mikegrudic/pytreegrav
+https://github.com/FlorianThibord/OptimiR
+https://github.com/openneuropet/PET2BIDS
+https://github.com/pelahi/VELOCIraptor-STF
+https://github.com/neherlab/nextalign
+https://github.com/yongsukyee/uncertain_blackholemass
+https://github.com/stevengiacalone/triceratops
+https://github.com/dazhwu/pydynpd
+https://github.com/FarnazFouladi/HashSeq_Manuscript
+https://github.com/ratt-ru/PyMORESANE
+https://github.com/ropensci/tokenizers
+https://github.com/NLeSC/mcfly
+https://github.com/hsocasnavarro/NICOLE
+https://github.com/Valires/er-evaluation
+https://github.com/palumbom/GRASS
+https://github.com/ropensci/timefuzz
+https://github.com/GoelandProver/Goeland
+https://github.com/RosettaCommons/RoseTTAFold
+https://github.com/scikit-learn-contrib/hdbscan
+https://github.com/ImperialCollegeLondon/rcs-pacemakers
 https://github.com/rudolffu/pyfosc
+https://github.com/AnitaPetzler/AMOEBA
+https://github.com/ropensci/assertr
+https://github.com/hpparvi/ldtk
+https://github.com/RealTimeGenomics/rtg-tools
+https://github.com/youngjookim/sdr
+https://github.com/pjedge/longshot
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+https://github.com/geza-kovacs/tran_k2
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-https://github.com/FergusDonnan/Running-Optimal-Average
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+https://github.com/philres/catfishq
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 https://github.com/ZJUFanLab/bulk2space
-https://github.com/GEUS-Glaciology-and-Climate/pypromice
-https://github.com/DEIB-GECO/OpenGDC
-https://github.com/roban/CosmoloPy
-https://github.com/jan-rybizki/Chempy
-https://github.com/JolleJolles/pirecorder
-https://github.com/chenjj2/forecaster
-https://github.com/szpiech/selscan
-https://github.com/arshajii/ema
-https://github.com/tatekawa-astron/3LPT-init
-https://github.com/steven-murray/powerbox
-https://github.com/GabrielaCR/AGNfitter
-https://github.com/matteozennaro/reps
-https://github.com/WSWUP/agweather-qaqc
-https://github.com/mrc-ide/dde
-https://github.com/IBMTRostock/GIFT
-https://github.com/klee/klee
-https://github.com/phipsonlab/propeller-paper-analysis
-https://github.com/yesint/EnCurv
-https://github.com/nanoporetech/medaka
-https://github.com/christophuv/PeakBot_Example
-https://github.com/ireis/PRF
-https://github.com/Kaixhin/FGLab
-https://github.com/konfound-project/konfound
-https://github.com/ShubhadeepSadhukhan1993/fastSF
-https://github.com/CDSP-SCPO/WPSS-for-ESS-webpanel
-https://github.com/devsim/devsim
-https://github.com/grimme-lab/xtb
-https://github.com/andersdot/photoParallax
-https://github.com/fwhigh/stellar-locus-regression
-https://github.com/bertrandplez/Turbospectrum2019
-https://github.com/stammler/dustpylib
-https://github.com/lrnv/cort
-https://github.com/BiodataAnalysisGroup/UMIc
-https://github.com/kerkelae/disimpy
-https://github.com/iAART/aart
-https://github.com/NASA-Planetary-Science/Pade-disk-code
-https://github.com/henrikju/resolve
-https://github.com/sonjageorgievska/CClusTera
-https://github.com/vbaliga/gaussplotR
-https://github.com/cmillion/gPhoton
-https://github.com/sambit-giri/tools21cm
-https://github.com/FiorenSt/AutoSourceID-Light
-https://github.com/rhysf/HaplotypeTools
-https://github.com/davidkipping/inversebeta
-https://github.com/birnstiel/two-pop-py
-https://github.com/sjforeman/StringFast
-https://github.com/alchemistry/alchemlyb
-https://github.com/nespinoza/juliet
-https://github.com/haowenz/chromap
-https://github.com/mswzeus/TargetNet
-https://github.com/rivasiker/PhaseTypeR
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+https://github.com/robynlm/sphereint
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+https://github.com/python-streamz/streamz
+https://github.com/WangLabTHU/DeSP
+https://github.com/jonathansick/MoAstro
 https://github.com/c3s-magic/c3s-magic-wps
-https://github.com/reggiebernardo/PTAfast
-https://github.com/rajewsky-lab/spacemake
-https://github.com/ctkelley/MultiPrecisionArrays.jl
-https://github.com/CliMA/Oceananigans.jl
-https://github.com/metagenopolis/CroCoDeEL
-https://github.com/ropensci/rcitoid
-https://github.com/tidymodels/stacks
-https://github.com/wangchao-malab/DeepAc4C
-https://github.com/Yu-Group/simChef
-https://github.com/phelelani/nf-rnaSeqCount
-https://github.com/maize-genetics/rTASSEL
-https://github.com/mikessh/vdjtools
-https://github.com/axgoujon/convex_ridge_regularizers
-https://github.com/citation-file-format/cff-initializer-javascript
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+https://github.com/WMD-group/SMACT
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+https://github.com/teoxxx/nemiss_pbl
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+https://github.com/BiodataAnalysisGroup/kmerAnalyzer
+https://github.com/SophieMLV/axionHMcode
+https://github.com/nla-group/fABBA
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+https://github.com/ClaraLage/Portfolio-Transition
+https://github.com/pec27/lizard
+https://github.com/Circuitscape/Omniscape.jl
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+https://github.com/shandley/hecatomb
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+https://github.com/cnsetzer/kilopop
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+https://github.com/brentp/nim-lapper
+https://github.com/acbecker/hotpants
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+https://github.com/compomics/xilmass
+https://github.com/lh3/wgsim
+https://github.com/yangao07/abPOA
+https://github.com/LabTranslationalArchitectomics/riboWaltz
+https://github.com/ChrisBeaumont/brut
+https://github.com/ropensci/wdman
+https://github.com/fast-data-transfer/fdt
+https://github.com/ArisTr/PyRaTE
+https://github.com/UUDigitalHumanitieslab/texcavator
+https://github.com/alexander-mead/collapse
+https://github.com/MIAnalyzer/MIA
 https://github.com/lauralwatkins/cjam
-https://github.com/PacificBiosciences/pbbam
-https://github.com/ropensci/bikedata
-https://github.com/astro-informatics/harmonic
-https://github.com/mbhall88/rasusa
-https://github.com/martibosch/detectree
-https://github.com/ropensci/scrubr
-https://github.com/theosanderson/chronumental
-https://github.com/YSOVAR/YSOVAR
-https://github.com/llt1836/TE-HI-GCN
-https://github.com/ACTCollaboration/zCluster
-https://github.com/enthought/mayavi
-https://github.com/martenlourens/pySDR
-https://github.com/AnitaPetzler/AMOEBA
-https://github.com/ropensci/prism
-https://github.com/cbio-astar-tools/GeneCloudOmics
-https://github.com/ropensci/weatherOz
+https://github.com/ncbi/sra-tools
+https://github.com/ropensci/worrms
+https://github.com/epfl-radio-astro/LiSA
+https://github.com/sanger-pathogens/ariba
+https://github.com/barklem/mswavef
+https://github.com/JohannesBuchner/UltraNest
+https://github.com/PapenfussLab/gridss
+https://github.com/ropensci/arkdb
+https://github.com/highamm/sptotal
+https://github.com/NLeSC/cptm
+https://github.com/abeelen/powspec
+https://github.com/katholt/srst2
+https://github.com/pyFFTW/pyFFTW
+https://github.com/AngusWright/LAMBDAR
+https://github.com/OSS-Lab/ChemChaste
+https://github.com/DEIB-GECO/GeneNetFusion
+https://github.com/ropensci/historydata
+https://github.com/OSSOS/SurveySimulator
+https://github.com/yuliang419/Astronet-Triage
+https://github.com/ekiefl/pooltool
+https://github.com/Bioinformatics-Munich/scas_dashboard
+https://github.com/ropensci/tradestatistics
+https://github.com/FredHutch/SEACR
+https://github.com/cusbg/traveler
+https://github.com/xfangcosmo/2DFFTLog
+https://github.com/bacpop/PopPUNK
+https://github.com/FZJ-IEK3-VSA/ETHOS_PeNALPS
+https://github.com/locasto/libdisorder
+https://github.com/coljac/sensie
+https://github.com/HajimeKawahara/exojax
+https://github.com/leirufeng/iEnhancer-DCSV
+https://github.com/LiesaSalzer/MobilityTransformR
+https://github.com/mcfrith/dnarrange
+https://github.com/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022
+https://github.com/ropensci/rAltmetric
+https://github.com/nanograv/PINT
+https://github.com/jpmens/jo
+https://github.com/davidkipping/MACULA
+https://github.com/twopin/CAMP
+https://github.com/leonzheng2/butterfly
+https://github.com/aberer/RogueNaRok
+https://github.com/astroboylrx/PLAN
+https://github.com/jkbonfield/htscodecs
+https://github.com/fjankowsk/scatfit
+https://github.com/minkailin/stratsi
+https://github.com/MichelleLochner/astronomaly
+https://github.com/RadioAstronomySoftwareGroup/pyradiosky
+https://github.com/savage13/sacio
+https://github.com/csdms/bmi
+https://github.com/PRIS-CV/DS-UI
 https://github.com/leapigufpb/FuzzyClass
-https://github.com/donaldRwilliams/BGGM
-https://github.com/waynebhayes/SpArcFiRe
-https://github.com/AlgoLab/shark
-https://github.com/NLeSC/MAGMa
+https://github.com/hamers/tpi
+https://github.com/VasilyKokorev/stardust
+https://github.com/ants-project/ANTs
+https://github.com/weiliu123/PCLassoReg
+https://github.com/LindleyLentati/Cobra
+https://github.com/muzafferarikan/gNOMO2
+https://github.com/dtcc-platform/dtcc-builder
+https://github.com/benjaminbolling/RSW
+https://github.com/USU-Analytics-Solution-Center/Bruno.jl
+https://github.com/ropensci/MODIStsp
+https://github.com/NLeSC/Massive-PotreeConverter
+https://github.com/theonefromnowhere/FitCov
+https://github.com/demorest/nanopipe
+https://github.com/ropensci/opencv
+https://github.com/barnesgroupICL/Driftfusion
+https://github.com/vsquicciarini/madys
+https://github.com/OpenDA-Association/OpenDA
+https://github.com/interactivereport/scRNAsequest
+https://github.com/umbralcalc/foxi
+https://github.com/jacobmerson/model-traits
+https://github.com/bcgsc/goldrush
+https://github.com/icecube/TauRunner
+https://github.com/gem-pasteur/macsyfinder
+https://github.com/ucl-exoplanets/pylightcurve
+https://github.com/lzx325/DeeReCT-APA-repo
+https://github.com/johnpaulett/python-hl7
+https://github.com/EdanRein/pyPplusS
+https://github.com/martinsparre/XSHPipelineManager
+https://github.com/cbg-ethz/V-pipe
+https://github.com/ropensci/parzer
+https://github.com/MikkelSchubert/adapterremoval
+https://github.com/ropensci/readODS
+https://github.com/johannes-titz/cofad
+https://github.com/xraypy/xraylarch
+https://github.com/stevertaylor/gw_pta_emulator
+https://github.com/reneshbedre/bioinfokit
+https://github.com/wathela/FIRST-CLASSIFIER
+https://github.com/joshjchayes/TransitFit
+https://github.com/ComparativeGenomicsToolkit/cactus
+https://github.com/widdowquinn/pyani
+https://github.com/mikesmitka/truvot
+https://github.com/seawander/DebrisDiskFM
+https://github.com/light-curve/light-curve
+https://github.com/citation-file-format/cff-initializer-javascript
+https://github.com/sidchaini/DistClassiPy
+https://github.com/PengyiZhang/DRR4Covid
+https://github.com/mscroggs/symfem
+https://github.com/WorkflowConversion/CTDopts
+https://github.com/wadpac/GGIR
+https://github.com/EmmanuelSchaan/ThumbStack
+https://github.com/temken/DarkARC
+https://github.com/ropensci-review-tools/autotest
+https://github.com/ropensci/prism
+https://github.com/pnnl/HyperNetX
+https://github.com/Cadaei-Yuvxvs/OSHy-X
+https://github.com/SouthGreenPlatform/PyRice
+https://github.com/benmontet/f3
+https://github.com/JetBrains-Research/spbla
+https://github.com/davidkipping/flicker
+https://github.com/rrwick/Unicycler
+https://github.com/hildebra/sdm
+https://github.com/temuller/hostphot
+https://github.com/shenwei356/seqkit
+https://github.com/datngu/Circall
+https://github.com/aobr/gsf
+https://github.com/moustakas/iSEDfit
+https://github.com/ropensci/git2r
+https://github.com/portsmouth/cmbview
+https://github.com/tyo-nu/pickaxe_paper
+https://github.com/skiehl/lcsim
+https://github.com/milkschen/leviosam2
+https://github.com/McPHAC/McPHAC
+https://github.com/gmarcais/Quorum
+https://github.com/DeepRank/iScore
+https://github.com/Huang-CL/Magrathea
+https://github.com/vmalnathnambiar/exfilms
+https://github.com/ropensci/camsRad
+https://github.com/IMS-MAXIMS/openMAXIMS
+https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI
 https://github.com/moranegg/deposit-template
-https://github.com/davidechicco/geneExpressionFromGEO
-https://github.com/phineasng/DECODE
-https://github.com/hamers/tpi
-https://github.com/ddarriba/prottest3
-https://github.com/ropensci/PostcodesioR
-https://github.com/ferdymercury/amide
-https://github.com/Keck-DataReductionPipelines/KCWI_DRP
-https://github.com/cbg-ethz/V-pipe
-https://github.com/ropensci/iheatmapr
-https://github.com/nhejazi/medoutcon
-https://github.com/horovod/horovod
-https://github.com/scottleedavis/google-earth-toolbox
+https://github.com/karel-brinda/ococo
+https://github.com/lwang-astro/SDAR
+https://github.com/jordanlab/STing
+https://github.com/statOmics/satuRnPaper
+https://github.com/brentp/gsort
+https://github.com/ropensci/beautier
+https://github.com/junkoda/cola_halo
+https://github.com/tsfloss/DensityFieldTools
+https://github.com/WGLab/InterVar
+https://github.com/husonlab/malt
+https://github.com/guilledufort/EMVC-2
+https://github.com/AgentM-GEG/residual_feature_extraction
+https://github.com/parklab/SCAN2
+https://github.com/tpospisi/RFCDE
+https://github.com/baxmittens/VTUFileHandler.jl
+https://github.com/free1234hm/CLAM
+https://github.com/mlaparie/phidget-tools
+https://github.com/equipeGST/RiboDoc
+https://github.com/ropensci/mauricer
+https://github.com/ImperialCollegeLondon/ICLOCS
+https://github.com/matvii/ADAM
+https://github.com/djsutherland/py-sdm
+https://github.com/Siegel-Lab/BioSmoother
+https://github.com/ysekig/GPMsDB-tk
+https://github.com/sonwell/biotools
+https://github.com/NiallJeffrey/DeepMass
+https://github.com/SAIL-Labs/AMICAL
+https://github.com/SpaceOdyssey/Blobby3D
+https://github.com/haowang-astro/jetsimpy
+https://github.com/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark
+https://github.com/mentatpsi/OSGenome
+https://github.com/mes5k/amap-align
+https://github.com/lastz/lastz
+https://github.com/Starfish-develop/Starfish
+https://github.com/drupke/ifsfit
+https://github.com/JuliaGeometry/DelaunayTriangulation.jl
+https://github.com/xianggebenben/GraphSL
+https://github.com/plazar/TOASTER
+https://github.com/pachterlab/kallisto
+https://github.com/twinl/website
+https://github.com/NarlikarLab/exoDIVERSITY
+https://github.com/AbeelLab/lorikeet
+https://github.com/bd-j/prospector
+https://github.com/maize-genetics/rTASSEL
+https://github.com/tsfloss/URecon
+https://github.com/ixkael/3DEX
+https://github.com/ropensci/geojsonio
+https://github.com/PCMSolver/pcmsolver
+https://github.com/devanshkv/fetch
+https://github.com/wilkelab/Opfi
+https://github.com/magnuspalmblad/shic
+https://github.com/BorgwardtLab/simbsig
+https://github.com/genome/somatic-sniper
+https://github.com/nanoporetech/pinfish
+https://github.com/chenwuperth/rgz_rcnn
+https://github.com/schochastics/signnet
+https://github.com/archaeo-pteryx/PowerSpecCovFFT
+https://github.com/dokkum/maskfill
+https://github.com/SCECcode/pycsep
 https://github.com/bpairet/mayo_hci
-https://github.com/changhoonhahn/pySpectrum
-https://github.com/elsner/arkcos
-https://github.com/wokast/RePrimAnd
-https://github.com/gkulkarni/QLF
-https://github.com/bbye98/mdcraft
+https://github.com/sambit-giri/BCemu
+https://github.com/mourisl/Lighter
+https://github.com/rvaser/thread_pool
+https://github.com/jonzink/EDI_Vetter_unplugged
+https://github.com/hannorein/rebound
+https://github.com/nabeelre/BTSbot
+https://github.com/JGCRI/osiris
+https://github.com/ecological-cities/home2park
+https://github.com/mp3guy/ElasticFusion
+https://github.com/sid-krish/Rhometa_Full_Genome
+https://github.com/nikhil-sarin/redback
+https://github.com/rdpstaff/ReadSeq
+https://github.com/HengyueZ/astrofix
+https://github.com/nye17/javelin
+https://github.com/savila/HALOGEN
+https://github.com/blind-contours/CVtreeMLE
+https://github.com/agnetelundgaard/BALDR
+https://github.com/PolymathicAI/AstroCLIP
+https://github.com/cobilab/altair
+https://github.com/YuSugihara/MutMap
+https://github.com/AnthonyOfSeattle/pyAscoreValidation
+https://github.com/birnstiel/two-pop-py
+https://github.com/nanakiksc/zerone
+https://github.com/ropensci/DataSpaceR
+https://github.com/legolason/PyQSOFit
+https://github.com/hydrosolutions/riversCentralAsia
+https://github.com/thieu1995/permetrics
+https://github.com/nmfs-fish-tools/SSMSE
+https://github.com/PlanetHunters/tkmatrix
+https://github.com/fabiopardo/tonic
+https://github.com/FourierFlows/GeophysicalFlows.jl
+https://github.com/ggonnella/fastsubtrees
+https://github.com/MesquiteProject/MesquiteCore
+https://github.com/barklem/abo-cross
+https://github.com/ropensci/isdparser
+https://github.com/ropensci/UCSCXenaTools
+https://github.com/htjb/margarine
+https://github.com/veg/tn93
+https://github.com/gymreklab/chips
+https://github.com/CNIC-Proteomics/TurboPutative-web
+https://github.com/mrc-ide/dust
+https://github.com/ImperialCollegeLondon/champ
+https://github.com/lnferris/ocean_data_tools
+https://github.com/axgoujon/convex_ridge_regularizers
+https://github.com/ropensci/tracerer
+https://github.com/ec-jrc/nrt
+https://github.com/miguelzuma/hi_class_public
+https://github.com/RiccardoBiondi/segmentation
+https://github.com/baxmittens/OpenGeoSysUncertaintyQuantification.jl
+https://github.com/JulianZDing/UniMAP
+https://github.com/martinjzhang/scDRS
+https://github.com/atmos-cloud-sim-uj/PySDM
+https://github.com/wcxve/elisa
+https://github.com/TomKellyGenetics/graphsim
+https://github.com/ukoethe/vigra
+https://github.com/arq5x/grabix
+https://github.com/exosports/HOMER
+https://github.com/pavolgaj/ObsPlanner
+https://github.com/Ramialison-Lab-ARMI/3DCardiomics
+https://github.com/wvanzeist/riroriro
+https://github.com/vferat/pycrostates
+https://github.com/vmmunoza/nuHawkHunter
+https://github.com/ropensci/tic
+https://github.com/samsledje/ConPLex_dev
+https://github.com/JorenSix/Olaf
+https://github.com/ajohnson-uoregon/llvm-project
+https://github.com/ltlancas/walter
+https://github.com/LiuJJ0327/CCPE
+https://github.com/josegit88/SCORPIO
+https://github.com/MariaTsantaki/FASMA-synthesis
+https://github.com/COSMIC-PopSynth/COSMIC
+https://github.com/actris-cloudnet/cloudnetpy
+https://github.com/astro-informatics/flaglet-archive
+https://github.com/EpiVec/TDLM
+https://github.com/ropensci/hydroscoper
+https://github.com/icecube/toise
+https://github.com/GrainLearning/grainLearning
+https://github.com/hamers/secularmultiple
+https://github.com/robdjeff/eagles
+https://github.com/ncbi/TPMCalculator
+https://github.com/mdruett/COCOPLOT
+https://github.com/CityU-AIM-Group/HTD
+https://github.com/yukiteruono/pbsim2
+https://github.com/Aminsinichi/wearable-hrv
+https://github.com/imperialchem/mrd-demo
+https://github.com/ropensci/rusda
+https://github.com/faasm/faasm
+https://github.com/COVID-IWG/epimargin
+https://github.com/mwvgroup/pwv_kpno
+https://github.com/mwalmsley/zoobot
+https://github.com/ilaudy/PIAO
+https://github.com/ropensci/namext
+https://github.com/ropensci/taxa
+https://github.com/cnellington/Contextualized
+https://github.com/Caltech-IPAC/Montage
+https://github.com/sinc-lab/miRe2e
+https://github.com/JuliaOcean/PlanktonIndividuals.jl
+https://github.com/CDSP-SCPO/WPSS-for-ESS-webpanel
+https://github.com/liniguez/Insplico_simulations
+https://github.com/prashjet/popkinmocks
+https://github.com/kd0kfo/cosmology
+https://github.com/soraxas/sbp-env
+https://github.com/ropensci/tif
+https://github.com/r-lib/credentials
+https://github.com/IRCAD/camp
+https://github.com/ChengF-Lab/AOPEDF
+https://github.com/jdidion/atropos
+https://github.com/fermiPy/fermipy
+https://github.com/SJaffa/Jplots
+https://github.com/facom/tidev
+https://github.com/mne-tools/mne-icalabel
+https://github.com/putonti/virMine
+https://github.com/fulcrumgenomics/fgbio
+https://github.com/ropensci/terrainr
+https://github.com/dgerosa/surrkick
+https://github.com/quantum-exeter/SpiDy.jl
+https://github.com/redcap-tools/PyCap
+https://github.com/BU-ISCIII/taranis
+https://github.com/tvwenger/hii-region-kinematics
+https://github.com/nekokoe/Plasmer
+https://github.com/eggplantbren/RMHB
+https://github.com/eltevo/StePS
+https://github.com/DReichLab/EIG
+https://github.com/basp-group/Faceted-HyperSARA
+https://github.com/dirmeier/surjectors
+https://github.com/JieZheng-ShanghaiTech/PiLSL
+https://github.com/ttgump/scDHMap
+https://github.com/neuralgraphs/diman
+https://github.com/bxskdh/TSTA
+https://github.com/Kaixhin/spinning-up-basic
+https://github.com/PeterKamphuis/pyFAT-astro
+https://github.com/ropensci/fulltext
+https://github.com/BioComputingUP/ring-pymol
+https://github.com/ropensci/rorcid
+https://github.com/raphael-group/hatchet
+https://github.com/OxES/k2sc
+https://github.com/biocore/deblur
+https://github.com/jendelel/PrankWebApp
+https://github.com/Cloud-Drift/clouddrift
+https://github.com/ropensci/addressable
+https://github.com/dvallesp/ASOHF
+https://github.com/teoxxx/rlos
+https://github.com/Hegghammer/daiR
+https://github.com/elnjensen/Tapir
+https://github.com/msalibian/RBF
+https://github.com/juliotux/astropop
+https://github.com/lasseignelab/CINmetrics
+https://github.com/nivha/three_body_integration
+https://github.com/stefanradev93/BayesFlow
+https://github.com/ColdThunder/NR-code
+https://github.com/lanl/scico
+https://github.com/akcochrane/TEfits
+https://github.com/husonlab/megan-ce
+https://github.com/TinkerTools/tinker9
+https://github.com/sanger-pathogens/circlator
+https://github.com/achael/eht-imaging
+https://github.com/TNEL-UCSD/autolfads-deploy
+https://github.com/ropensci/nbaR
+https://github.com/MichaelSel/edoJS
+https://github.com/hungyipu/Odyssey
+https://github.com/msyazwanfaid/hilalpy
+https://github.com/matthiasfabry/spinOS
+https://github.com/Kuifje02/vrpy
+https://github.com/FEniCS/ffcx
+https://github.com/rgerum/pylustrator
+https://github.com/KBNLresearch/ochre
+https://github.com/DGtal-team/DGtal
+https://github.com/mwoodbri/MRIdb
+https://github.com/hyosubkim/bayes-toolbox
+https://github.com/SciOmicsLab/PhenoComb
+https://github.com/hippke/wotan
+https://github.com/moead-framework/framework
+https://github.com/ImperialCollegeLondon/rcs_cluster_scripts
+https://github.com/tacazares/SeedMatchR
+https://github.com/brentp/cigar
 https://github.com/spacetelescope/stsynphot_refactor
-https://github.com/OrchardLANL/DPFEHM.jl
-https://github.com/AstroAccelerateOrg/astro-accelerate
-https://github.com/vfonov/DARQ
-https://github.com/zpenoyre/CausticFrog
-https://github.com/gbouras13/plassembler
-https://github.com/WMD-group/MacroDensity
-https://github.com/CosmoStat/pmclib
-https://github.com/daeken/Emokit
-https://github.com/MaudeDavidLab/GMEmbeddings
-https://github.com/CoLRev-Environment/bib-dedupe
-https://github.com/AgentM-GEG/residual_feature_extraction
-https://github.com/zooniverse/starpy
-https://github.com/el2718/FastQSL
-https://github.com/hongwanliu/DarkHistory
-https://github.com/zhangyk8/sconce-scms
-https://github.com/raredd/kmdata
-https://github.com/lehtiolab/msstitch
-https://github.com/pyro-kinetics/pyrokinetics
-https://github.com/UK-Digital-Heart-Project/4Dsurvival
-https://github.com/ORNL/curifactory
-https://github.com/deezer/spleeter
+https://github.com/bwkeller/PASTA
+https://github.com/kowallus/mbgc
+https://github.com/tekpinar/correlationplus
+https://github.com/eggplantbren/DNest3
+https://github.com/NERC-CEH/RMAVIS
+https://github.com/lsds/LightSaber
+https://github.com/SJLeo/FFSD
+https://github.com/RECETOX/RIAssigner
+https://github.com/miriamkw/GluPredKit
+https://github.com/ropensci/tinkr
+https://github.com/jianlin-cheng/DRCon
+https://github.com/icbm-iupui/STAFF
+https://github.com/sebhaan/geobo
+https://github.com/zclaytor/kiauhoku
+https://github.com/forceflow1049/PhAst
+https://github.com/telatin/qax
+https://github.com/Michalychforever/CLASS-PT
+https://github.com/ncbi/datasets
+https://github.com/KeplerGO/kadenza
+https://github.com/mengaldo/PySPOD
+https://github.com/felixbosco/KeplerFit
+https://github.com/RAMP-project/RAMP
+https://github.com/tholoien/XDGMM
+https://github.com/EigenDev/simbi
+https://github.com/ERA-URBAN/wrfpy
+https://github.com/hope-data-science/tidyfst
+https://github.com/drupke/questfit
+https://github.com/NLeSC/eSalsa-MPI
+https://github.com/miracum/ahd2fhir
+https://github.com/RongquanWang/ELF-DPC
+https://github.com/ropensci/bittrex
+https://github.com/bessagroup/f3dasm
+https://github.com/3D-e-Chem/knime-silicos-it
+https://github.com/pangeo-data/climpred
+https://github.com/VIB-PSB/MINI-EX
+https://github.com/macs3-project/MACS
+https://github.com/NLeSC/embodied-emotions-scripts
+https://github.com/amerand/PMOIRED
 https://github.com/kdm9/axe
-https://github.com/scottgigante/picopore
-https://github.com/facebookresearch/faiss
-https://github.com/hfarias/mask_galaxy
-https://github.com/SteveMacenski/slam_toolbox
-https://github.com/Ge-Lab/USAT
-https://github.com/JustinYKC/FEPOPS
-https://github.com/ucl-exoplanets/ExoGAN_public
+https://github.com/coccoinomane/song
+https://github.com/astrorama/SourceXtractorPlusPlus
+https://github.com/fmichel/TurtleKit
+https://github.com/ropensci/phonfieldwork
+https://github.com/catherinezucker/radfil
+https://github.com/Mik3M4n/BaCoN
 https://github.com/maxpumperla/hyperas
-https://github.com/entangled/entangled
-https://github.com/SolavLab/DuoDIC
-https://github.com/montilab/nf-gwas-pipeline
-https://github.com/equitable-equations/fqar
-https://github.com/pierfied/karmma
-https://github.com/quantum-exeter/SpiDy.jl
-https://github.com/ropensci/EML
-https://github.com/watts-dev/watts
-https://github.com/hiddenSymmetries/simsopt
-https://github.com/ESMValGroup/ESMValCore
-https://github.com/CMU-SAFARI/BLEND
-https://github.com/pmvreeswijk/BlackBOX
-https://github.com/WMD-group/SMACT
-https://github.com/lwang-astro/PeTar
-https://github.com/cmateu/galstreams
-https://github.com/tidymodels/infer
-https://github.com/sanger-pathogens/Artemis
-https://github.com/t-brandt/orvara
-https://github.com/BritishGeologicalSurvey/pyvolcans
+https://github.com/hypre-space/hypredrive
+https://github.com/MrOlm/drep
+https://github.com/torognes/vsearch
+https://github.com/facebookresearch/faiss
+https://github.com/dwkim78/pdtrend
+https://github.com/mdlreyes/void-dwarf-analysis
+https://github.com/andreyshabalin/TwinEQTL
+https://github.com/callendeprieto/ferre
+https://github.com/tornede/py_experimenter
+https://github.com/caseyjlaw/rtpipe
+https://github.com/FunctionalUrology/MLcps
+https://github.com/zhanglabtools/CASAVA
+https://github.com/CajoterBraak/demc2
+https://github.com/liangcheng-hrbmu/EnrichDO
+https://github.com/SterlingYM/astroPIPS
+https://github.com/hposborn/MonoTools
+https://github.com/ekerrison/RadioSED
+https://github.com/thomasorb/orbs
+https://github.com/jeancmaia/mcglm
+https://github.com/DreamCloud-Project/McSim-TLM-NoC
+https://github.com/AlexandrosAntoniadis/ODUSSEAS
+https://github.com/minaskar/pocomc
+https://github.com/AA-ALERT/frbcatdb
+https://github.com/ropensci/dataaimsr
+https://github.com/RitchieLab/hudson
+https://github.com/quadram-institute-bioscience/dadaist2
+https://github.com/netrias/rnassist
+https://github.com/htjb/globalemu
+https://github.com/astropy/specutils
+https://github.com/ropensci/MODISTools
+https://github.com/rpetit3/fastq-scan
+https://github.com/SebOliver/PCA
+https://github.com/ulebreui/shark
+https://github.com/ropensci-review-tools/pkgstats
+https://github.com/Illumina/canvas
+https://github.com/gpertea/gclib
+https://github.com/linDing-groups/Deep-4mCW2V
+https://github.com/sfarrens/sfof
+https://github.com/DEIB-GECO/VarSum
+https://github.com/franciscovillaescusa/Pylians3
+https://github.com/mifumagalli/cluster-cloc
+https://github.com/KTH-Nek5000/UQit
+https://github.com/ORNL/Equilipy
+https://github.com/nluetts/NoisySignalIntegration.jl
+https://github.com/spglib/spgrep
+https://github.com/ahcm/ffindex
+https://github.com/ska-sa/hibayes
+https://github.com/cosimameyer/overviewR
+https://github.com/saopicc/killMS
+https://github.com/chapmanb/bcbio.variation
+https://github.com/jonas-fuchs/varVAMP
+https://github.com/annehutter/grid-model
+https://github.com/SPARTA-dev/SPARTA
+https://github.com/maxmahlke/ssos
+https://github.com/DJArmstrong/TransitSOM
+https://github.com/jonathansick/starfish
+https://github.com/lazzati-astro/MCRaT
+https://github.com/cl3425/Clairvoyance
+https://github.com/SWIFTSIM/emulator
+https://github.com/p-slash/qsonic
+https://github.com/ycwu1030/EvoEMD
+https://github.com/RichardObi/medigan
+https://github.com/candYgene/QTM
+https://github.com/qmarcou/IGoR
+https://github.com/blind-contours/SuperNOVA
+https://github.com/Degiacomi-Lab/molearn
+https://github.com/zhangjunpeng411/SCOM
+https://github.com/MREYE-LUMC/ZOSPy
+https://github.com/kdm9/libqcpp
+https://github.com/steineggerlab/foldmason
+https://github.com/big-data-lab-team/spot
+https://github.com/juzikong/photGalIMF
+https://github.com/ropensci/outsider.devtools
+https://github.com/kadyb/rgugik
+https://github.com/Rnazx/Scaling-Relations
+https://github.com/podondra/bayesian-sznet
+https://github.com/fwhigh/stellar-locus-regression
+https://github.com/ropensci/awardFindR
+https://github.com/engyasin/Offline_MOT
+https://github.com/candYgene/abg-ld
+https://github.com/m-dadej/MarSwitching.jl
+https://github.com/samhforbes/PupillometryR
+https://github.com/yangyanli/DO-Conv
+https://github.com/vembrane/vembrane
+https://github.com/UFParLab/aces4
+https://github.com/AMReX-Astro/MAESTRO
+https://github.com/FINNGEN/lavaa-react
+https://github.com/soedinglab/plass
+https://github.com/abatten/fruitbat
+https://github.com/shenlab-sinai/ngsplot
+https://github.com/sebastian-zieba/PACMAN
+https://github.com/brandonckelly/carma_pack
+https://github.com/mriener/gausspyplus
+https://github.com/ProjectPyRhO/PyRhO
+https://github.com/backyardworlds/wiseview
+https://github.com/steven-murray/pydftools
+https://github.com/bramvandijk88/cacatoo
+https://github.com/AOtools/aotools
+https://github.com/aidenlab/juicer
+https://github.com/joacoh/wise2mbh
+https://github.com/freelawproject/eyecite
+https://github.com/biocore/unifrac-binaries
+https://github.com/haowenz/chromap
+https://github.com/galtay/urchin
+https://github.com/shaniAmare/long_read_tools
+https://github.com/natashabatalha/picaso
+https://github.com/Ambuj-UF/APOP
+https://github.com/NLeSC/esibayes
+https://github.com/dpseidel/stmove
+https://github.com/Shamir-Lab/domino_web
+https://github.com/lutteropp/NetRAX
+https://github.com/uab-cgds-worthey/quac
+https://github.com/shenwei356/kmcp
+https://github.com/cog-imperial/galini
+https://github.com/smog-server/OpenSMOG
+https://github.com/H-E-L-P/XID_plus
+https://github.com/gtonkinhill/fastbaps
+https://github.com/bmvdgeijn/WASP
+https://github.com/mpievolbio-scicomp/cancer_sim
+https://github.com/jacob-long/jtools
+https://github.com/bio-phys/BioEn
+https://github.com/VincentAlcazer/StatAid
+https://github.com/CobayaSampler/cobaya
+https://github.com/Box-Tools/BoxKit
+https://github.com/suneeshjacob/ACRoD
+https://github.com/conda/conda
+https://github.com/FCS-analysis/PyScanFCS
+https://github.com/SSAGESproject/SSAGES
+https://github.com/andersen-lab/ivar
+https://github.com/DICP1810/ComMap
+https://github.com/opengeos/segment-geospatial
+https://github.com/phpuech/OT_Analysis
+https://github.com/PrincetonUniversity/FastTemplatePeriodogram
+https://github.com/margudo/LSSGALPY
+https://github.com/artic-network/readucks
+https://github.com/PdIPS/CBX
+https://github.com/brentp/cyvcf2
+https://github.com/tkerscher/blast
+https://github.com/firedrakeproject/checkpoint_schedules
+https://github.com/xinyiguan/py2lispIDyOM
+https://github.com/bencebeky/spotrod
+https://github.com/frank1010111/bluebonnet
+https://github.com/GRTLCollaboration/GRDzhadzha
+https://github.com/nhcrisp/ADBSat
+https://github.com/jeremysanders/dsdeproj
+https://github.com/jolie/tquery
+https://github.com/BRAIN-TO/GIRFReco.jl
+https://github.com/VegeWaterDynamics/motrainer
+https://github.com/spacetelescope/hst_cosmic_rays
+https://github.com/refresh-bio/agc
+https://github.com/JuliaArrays/LazyArrays.jl
+https://github.com/kolikem/loma
+https://github.com/basp-group/BUQO
+https://github.com/mateidavid/nanocall
+https://github.com/stermzsofi/TiDE
+https://github.com/ropensci/jagstargets
+https://github.com/AmruteLab/PyChelator
+https://github.com/TheMillerLab/genetex
+https://github.com/SpeedyWeather/SpeedyWeather.jl
+https://github.com/DRMacIver/shrinkray
+https://github.com/halomod/halomod
+https://github.com/brentp/kexpr-nim
+https://github.com/nlppln/nlppln
+https://github.com/Imperial-visualizations/Physics-Visualizations
+https://github.com/RadioAstronomySoftwareGroup/pyuvdata
+https://github.com/refresh-bio/Whisper
+https://github.com/Varnani/pywd2015-qt5
+https://github.com/cinemascience/cinema_snap
+https://github.com/quinlanW/dbMisLoc
+https://github.com/jakelangham/kestrel
+https://github.com/eEcoLiDAR/Laserfarm
+https://github.com/MaayanLab/signature-commons-ui
+https://github.com/GEUS-Glaciology-and-Climate/pypromice
+https://github.com/PacificBiosciences/FALCON
+https://github.com/ropensci/av
+https://github.com/CPM-project/MCPM
+https://github.com/ydLiu-HIT/deSALT
+https://github.com/zpliulab/GENELink
+https://github.com/bcgsc/ntHash
+https://github.com/luxsrc/gray
+https://github.com/adrn/schwimmbad
+https://github.com/ncbi/ncbi-vdb
+https://github.com/ZhaoXM-Lab/metaMIC
+https://github.com/SotaYoshida/NuclearToolkit.jl
+https://github.com/ocxtal/minialign
+https://github.com/xfcui/onn4arg
+https://github.com/SchmidtDSE/afscgap
+https://github.com/mdshw5/pyfaidx
+https://github.com/D-Crake/HEADSS
+https://github.com/yatisht/usher
+https://github.com/ropensci/rcrossref
+https://github.com/CavendishAstrophysics/postmortem
+https://github.com/tkonolige/city2ba
+https://github.com/zhangjunpeng411/Scan
+https://github.com/seamplex/feenox
+https://github.com/nliulab/HRnV-Calc
+https://github.com/Sulstice/cocktail-shaker
+https://github.com/vsulis5357/Sonification
+https://github.com/wfondrie/mokapot
+https://github.com/felixchenier/kineticstoolkit
+https://github.com/exosports/MARGE
+https://github.com/Multiversario/satcand
+https://github.com/DeepMIALab/UC-NfNet
+https://github.com/bandframework/Taweret
+https://github.com/wokast/PyCactus
+https://github.com/Yu-Group/simChef
+https://github.com/viash-io/viash
+https://github.com/UrbanRuralSystems/ur-scape
 https://github.com/chrisaberson/BetterReg
-https://github.com/OPUS-MaLab/opus_fold3
-https://github.com/JorenSix/Panako
-https://github.com/BaroudLab/Griottes
-https://github.com/mrc-ide/squire
-https://github.com/tp2vis/distribute
-https://github.com/nasa/ncompare
-https://github.com/rkiman/wdwarfdate
-https://github.com/marbl/MashMap
-https://github.com/bjmorgan/py-sc-fermi
-https://github.com/ropensci/ezknitr
-https://github.com/spjuhel/BoARIO
-https://github.com/jlustigy/coronagraph
-https://github.com/nwchemgit/nwchem
-https://github.com/Beuth-Erdelt/DBMS-Benchmarker
-https://github.com/jfwallin/JSPAM
-https://github.com/LTeinturier/Cloud-Killer-
-https://github.com/BGI-Qingdao/TGS-GapCloser
-https://github.com/nh13/DWGSIM
-https://github.com/potassco/clingo
-https://github.com/bbuchfink/diamond
-https://github.com/dutilh/CAT
-https://github.com/souzamonteiro/cnatool
-https://github.com/idefix-code/idefix
-https://github.com/ropensci/hddtools
-https://github.com/EddyRivasLab/infernal
-https://github.com/iontorrent/TS
-https://github.com/daniel-muthukrishna/astrodash
-https://github.com/DreamCloud-Project/McSim-TLM-NoC
-https://github.com/vojtech-sidorin/quickclump
-https://github.com/lukapecnik/NiaAML
-https://github.com/londumas/redvsblue
-https://github.com/hippke/communication
-https://github.com/jan-rybizki/Galaxia_wrap
-https://github.com/BapMel/mesocalc
-https://github.com/Kaixhin/spinning-up-basic
-https://github.com/legolason/PyQSOFit
+https://github.com/mnets/pymnet
+https://github.com/lijing28101/maize_pyrpipe
+https://github.com/ncbi/SKESA
+https://github.com/carpenterphysics/DarkFlux
+https://github.com/snfactory/binaryoffset
+https://github.com/sybila/biodivine-aeon-py
+https://github.com/obreschkow/dftools
+https://github.com/jteutenberg/downpore
+https://github.com/bluenote-1577/sylph
+https://github.com/LLNL/echemfem
+https://github.com/sap218/jabberwocky
+https://github.com/arq5x/bedtools2
+https://github.com/tschad/pycelp
+https://github.com/ACCarnall/bagpipes
+https://github.com/genomehubs/goat-cli
 https://github.com/NLeSC/SalientDetector-matlab
-https://github.com/pydata/xarray
-https://github.com/magnuspalmblad/addFeatures
-https://github.com/csmsoftware/IMPaCTS
-https://github.com/jakevdp/wpca
-https://github.com/ryanhausen/fitsmap
-https://github.com/hall-lab/speedseq
-https://github.com/openvax/mhcflurry
-https://github.com/ec363/parsleyapp
-https://github.com/LeandroOrdonez/explora-vr-dash-client
-https://github.com/huiwenke/MineProt
-https://github.com/jsobeck/MOOG_SCAT
-https://github.com/lilyminium/psiresp
-https://github.com/fabian-sp/GGLasso
+https://github.com/mtazzari/binary
+https://github.com/wuzhenao/CPPLS-MLP
+https://github.com/yyZhang14/dbEssLnc
+https://github.com/ropensci/infx
+https://github.com/ORNL/curifactory
+https://github.com/ImperialCollegeLondon/epidemia
+https://github.com/tidyverse/glue
+https://github.com/RWTH-EBC/AixCaliBuHA
+https://github.com/pawni/BayesByHypernet
+https://github.com/facebookresearch/segment-anything
+https://github.com/natelust/least_asymmetry
+https://github.com/giswqs/geemap
+https://github.com/isoverse/isoreader
+https://github.com/marieBvr/virAnnot
+https://github.com/cmateu/galstreams
+https://github.com/jiwoncpark/baobab
+https://github.com/nextgenusfs/amptk
+https://github.com/MarkMageeAstro/Riddler
+https://github.com/frescigno/magpy_rv
+https://github.com/hnikaein/stark
+https://github.com/Oftatkofta/cellocity
+https://github.com/masoncarney/stepped_luneburg
+https://github.com/LoganAMorrison/Hazma
+https://github.com/BiocomputeLab/paraSBOLv
+https://github.com/cumbof/honto
+https://github.com/kegiljarhus/pyBEMT
+https://github.com/jackmwolf/tehtuner
+https://github.com/AMReX-Astro/MAESTROeX
+https://github.com/IanHeywood/oxkat
+https://github.com/ShubhadeepSadhukhan1993/fastSF
+https://github.com/jkimlab/msPIPE
+https://github.com/esa/polyhedral-gravity-model
+https://github.com/horovod/horovod
+https://github.com/MiguelEA/nudec_BSM
+https://github.com/rathnakumars/difference-smoothing
+https://github.com/EnsembleGovServices/kamodo-core
+https://github.com/zizroc/villager
+https://github.com/spacetelescope/mirage
 https://github.com/linbox-team/linbox
-https://github.com/lh3/wgsim
-https://github.com/fcastagna/preprofit
-https://github.com/akikuno/cstag
-https://github.com/tuoyl/tat-pulsar
-https://github.com/CaymanUnterborn/ExoPlex
-https://github.com/bioAI-Oslo/Spikeometric
-https://github.com/opencollab/arpack-ng
-https://github.com/cma2015/iwa-miRNA
-https://github.com/ropensci/nodbi
-https://github.com/reedacartwright/ngila
-https://github.com/ropensci/arkdb
-https://github.com/mjoppich/bioGUItools
-https://github.com/xenon-middleware/xenon-cli
-https://github.com/barnesgroupICL/Driftfusion
-https://github.com/USEPA/SSN2
-https://github.com/jianlin-cheng/DRCon
-https://github.com/mwaskom/seaborn
-https://github.com/JuliaSmoothOptimizers/DCISolver.jl
-https://github.com/fumi-github/omicwas
-https://github.com/bradkav/runDM
-https://github.com/nespinoza/mc-spam
-https://github.com/jmsdsouzaPhD/GWDALI
-https://github.com/weiliu123/PCLassoReg
-https://github.com/clauswilke/PeptideBuilder
-https://github.com/ouyang-lab/PRAS
-https://github.com/matiscke/lcps
-https://github.com/kkrismer/scansite-tools
-https://github.com/LTLA/basilisk
-https://github.com/fast-data-transfer/fdt
-https://github.com/Gaius-Augustus/GALBA
-https://github.com/RamanLab/iCOMIC
-https://github.com/danielenricocahall/elephas
-https://github.com/mrc-ide/cinterpolate
-https://github.com/Planet-AI-GmbH/tfaip
-https://github.com/fkiwy/unTimely_Catalog_explorer
-https://github.com/zblz/naima
-https://github.com/orbisgis/lczexplore
-https://github.com/CM2S/piglot
-https://github.com/astrom-tom/specstack
-https://github.com/elizakempton/Exo_Transmit
-https://github.com/rasg-affiliates/healvis
-https://github.com/laurazara/IgIDivA
-https://github.com/HajimeKawahara/juwvid
-https://github.com/UCBerkeleySETI/blimpy
-https://github.com/BrownDwarf/gollum
-https://github.com/SihanJiao/J-comb
-https://github.com/BartoszBartmanski/StoSpa2
-https://github.com/ropensci/rentrez
-https://github.com/USNavalResearchLaboratory/eispac
-https://github.com/ropensci/pendulum
-https://github.com/wlloyduw/ContainerProfiler
-https://github.com/TRASAL/psrdada-python
-https://github.com/adrn/schwimmbad
-https://github.com/ncbi/datasets
-https://github.com/eEcoLiDAR/Laserfarm
-https://github.com/ants-project/ANTs
-https://github.com/sing-group/my-brain-seq
-https://github.com/easybuilders/easybuild
-https://github.com/MMV-Lab/mmv_im2im
-https://github.com/kircherlab/ReMM
-https://github.com/dcorre/otrain
-https://github.com/savage13/sacio
-https://github.com/copasi/COPASI
-https://github.com/duffell/Disco
-https://github.com/bionlplab/GlaucomaNet
-https://github.com/CavendishAstrophysics/postmortem
-https://github.com/skendrew/midIR_sensitivity
-https://github.com/nathanchara/l1periodogram
-https://github.com/rohinkumar/correlcalc
-https://github.com/yatisht/usher
-https://github.com/Lbalkenhol/candl
-https://github.com/HWang-Summit/HCGrid
-https://github.com/LSSTDESC/descqa
-https://github.com/gabraham/flashpca
-https://github.com/KULL-Centre/DEERpredict
-https://github.com/secastel/phaser
-https://github.com/iomega/spec2vec
-https://github.com/temken/DaMaSCUS
-https://github.com/bhorowitz/HyPhy-public
+https://github.com/marius311/cosmoslik
+https://github.com/CosmoStat/CosmoPMC
+https://github.com/SchedMD/slurm
+https://github.com/sanger-pathogens/Artemis
+https://github.com/JuliaArrays/InfiniteArrays.jl
+https://github.com/rafaeleufrasio/lightning
+https://github.com/peikuan/WBBC
+https://github.com/dmey/synthia
+https://github.com/pni-lab/mlconfound
+https://github.com/tidymess-code/tidymess
+https://github.com/nespinoza/ld-exosim
+https://github.com/CTU-Bern/presize
+https://github.com/mrc-ide/rrq
+https://github.com/GATB/bcalm
+https://github.com/ysekig/GPMsDB-dbtk
+https://github.com/williamjameshandley/fgivenx
+https://github.com/entangled/entangled
+https://github.com/ekg/smithwaterman
+https://github.com/aarondotter/iso
+https://github.com/aiidateam/kiwipy
+https://github.com/nanoporetech/qcat
 https://github.com/kgullikson88/Telluric-Fitter
-https://github.com/BjoernBiltzinger/pyspi
-https://github.com/yair111/AnalyticLC
-https://github.com/scotthgn/AGNvar
-https://github.com/COVID-IWG/epimargin
-https://github.com/lh3/bgt
-https://github.com/sPaMFouR/RedPipe
-https://github.com/Leo-Simpson/c-lasso
-https://github.com/NCAR/NCAR-Classic-Libraries-for-Geophysics
-https://github.com/pikarpov-LANL/Sapsan
-https://github.com/DeepMIALab/UC-NfNet
-https://github.com/KorfLab/SNAP
-https://github.com/sambit-giri/BCemu
-https://github.com/Basvanstein/GSAreport
-https://github.com/ropensci/rebird
-https://github.com/citation-file-format/cff-converter-python
-https://github.com/PyFstat/PyFstat
-https://github.com/desihub/desitarget
-https://github.com/jdcphysics/validation
-https://github.com/barricklab/pLannotate
-https://github.com/JieZheng-ShanghaiTech/PiLSL
-https://github.com/avigan/SPHERE
-https://github.com/PabloVD/HaloGraphNet
-https://github.com/PapenfussLab/gridss
-https://github.com/mscroggs/symfem
-https://github.com/pfeinsper/drone-swarm-search
-https://github.com/barentsen/k2flix
-https://github.com/VincentAlcazer/StatAid
-https://github.com/matthiaslee/Xmatch
-https://github.com/bxia888/CEFCIG
-https://github.com/bonsai-team/Porechop_ABI
-https://github.com/seshnadathur/Revolver
-https://github.com/oliverphilcox/HADES
-https://github.com/pipliggins/EVolve
-https://github.com/martinlackner/abcvoting
-https://github.com/kateharborne/SimSpin
-https://github.com/fpavogt/fcmaker
-https://github.com/wtraylor/modular_megafauna_model
-https://github.com/afeinstein20/eleanor
-https://github.com/fchuffar/epimedtools
-https://github.com/onnela-lab/beiwe-backend
-https://github.com/jsh58/Genrich
-https://github.com/signaturescience/skater
+https://github.com/merenlab/anvio
+https://github.com/soylentdeen/MoogStokes
+https://github.com/ECP-copa/Cabana
+https://github.com/gasparl/possa
+https://github.com/Singh-Lab/DeMaSk
+https://github.com/auckland-cosmo/defrost-mpi
+https://github.com/david-mathews-1994/deltarice
+https://github.com/ropensci/EML
+https://github.com/ExoCTK/exoctk
+https://github.com/biocore-ntnu/pyranges
+https://github.com/ryokbys/nap
+https://github.com/bradkav/AntiparticleDM
+https://github.com/beckrob/Photo-z-SQL
+https://github.com/astro-informatics/DarkMappy
+https://github.com/evolbioinfo/bdpn
+https://github.com/pybamm-team/PyBaMM
+https://github.com/astrockragh/Mangrove
+https://github.com/bradkav/EarthShadow
+https://github.com/alan-turing-institute/MLJ.jl
+https://github.com/maickrau/MBG
+https://github.com/morpheus-project/morpheus
+https://github.com/pydata/xarray
+https://github.com/surhh/nfitsview
+https://github.com/nombac/optab
+https://github.com/alexdobin/STAR
+https://github.com/biomedia-mira/istn
+https://github.com/ImperialCollegeLondon/sharpy
+https://github.com/astroumd/miriad
+https://github.com/mrc-ide/PlasmoMAPI
+https://github.com/christophmschaefer/miluphcuda
+https://github.com/saopicc/DDFacet
+https://github.com/RTIInternational/gobbli
+https://github.com/lczech/gappa
+https://github.com/ropensci/drake
+https://github.com/herjy/SLIT
+https://github.com/bluefoxr/COINr
+https://github.com/basp-group/Puri-Psi
+https://github.com/james-m-osborn/astrosat
+https://github.com/ropensci/taxizedb
+https://github.com/adammoss/supernovae
+https://github.com/NuSpaceSim/nupyprop
+https://github.com/nipy/heudiconv
+https://github.com/arcaldwell49/SimplyAgree
+https://github.com/ropensci/rcol
+https://github.com/agurvich/FIRE_studio
+https://github.com/EC-Earth/ece2cmor3
 https://github.com/sebhoof/SolarAxionFlux
-https://github.com/rroyaute/h2_breeders_equation
-https://github.com/FireflySpectra/firefly_release
-https://github.com/Starfish-develop/Starfish
-https://github.com/ttgump/scDeepCluster_pytorch
-https://github.com/ysekig/GPMsDB-tk
-https://github.com/sanger-pathogens/assembly-stats
-https://github.com/ronshnapp/MyPTV
-https://github.com/RECETOX/MSMetaEnhancer
-https://github.com/Via-Appia/via-appia-online-viewer
+https://github.com/MFaymon/spINAR
+https://github.com/eaobservatory/jcmt_coadd
+https://github.com/moranegg/AffectationRO
+https://github.com/matsen/pplacer
+https://github.com/iancze/PSOAP
+https://github.com/NiallJeffrey/BornRaytrace
+https://github.com/bhorowitz/HyPhy-public
+https://github.com/BEAST-Fitting/beast
+https://github.com/simple-crypto/SCALib
+https://github.com/pkugyf/MST
+https://github.com/astrostat/BASCS
+https://github.com/SeamusClarke/RJplots
+https://github.com/jhkorhonen/MOODS
+https://github.com/ropensci/seasl
+https://github.com/villano-lab/nrCascadeSim
+https://github.com/tnakazato/priism
+https://github.com/iric-soft/km
+https://github.com/mtceballos/SIRENAdoc
+https://github.com/ropensci/gittargets
+https://github.com/APGG-Lab/APGG
+https://github.com/samaygarg/fuelcell
+https://github.com/HLasse/TextDescriptives
+https://github.com/Taywee/args
+https://github.com/marco-oliva/pfp
+https://github.com/bioinfo-ut/GenomeTester4
+https://github.com/raredd/kmdata
+https://github.com/ropensci/writexl
+https://github.com/jrenaud90/TidalPy
+https://github.com/bioAI-Oslo/Spikeometric
+https://github.com/MetazoaPhylogenomicsLab/FANTASIA
+https://github.com/pmelchior/des-exp-checker
+https://github.com/1054/Crab.Toolkit.michi2
+https://github.com/comprna/reorientexpress
+https://github.com/MatthijsHak/MetalDock
+https://github.com/JGCRI/rfasst
+https://github.com/donaldRwilliams/BGGM
+https://github.com/qtltools/qtltools
+https://github.com/davidkipping/ECCSAMPLES
+https://github.com/t-brandt/fitramp
+https://github.com/abrupt-climate/hyper-canny
+https://github.com/bokulich-lab/q2-fondue
+https://github.com/acerbilab/pybads
+https://github.com/snakemake/snakemake
+https://github.com/henry2004y/Vlasiator.jl
+https://github.com/asgr/Rfits
+https://github.com/mpeel/fastcc
+https://github.com/Kaixhin/Rainbow
+https://github.com/finagle29/DBSP_DRP
+https://github.com/lifs-tools/goslin
+https://github.com/ropensci/SymbiotaR2
+https://github.com/SynthSys/pyOmeroUpload
+https://github.com/fccoelho/epigrass
+https://github.com/ageorgakakis/StructureFunction
+https://github.com/barricklab/pLannotate
+https://github.com/TinkerTools/tinker-hp
+https://github.com/karllark/dust_extinction
+https://github.com/loneknightpy/idba
+https://github.com/TheJacksonLaboratory/SvAnna
+https://github.com/eabaron/synow
+https://github.com/lanl/swiftbat_python
+https://github.com/oorb/oorb
+https://github.com/atmos-cloud-sim-uj/PyMPDATA
+https://github.com/compomics/COSS
+https://github.com/tsfloss/BFast
+https://github.com/jan-rybizki/Chempy
+https://github.com/hansenjohnson/WhaleMap
+https://github.com/ejikeugba/serp
+https://github.com/RuthAngus/SIPK2
+https://github.com/biobakery/phylophlan
+https://github.com/PyPSA/linopy
+https://github.com/ropensci/staypuft
+https://github.com/leesulab/arcMS
+https://github.com/Theano/Theano
+https://github.com/nboley/idr
+https://github.com/GabrielNakamura/FishPhyloMaker
+https://github.com/Mik3M4n/EF-TIGRE
+https://github.com/biomedia-mira/blast-ct
+https://github.com/BackofenLab/StoatyDive
+https://github.com/vimc/dettl
+https://github.com/iquasere/UPIMAPI
+https://github.com/ArtRand/signalAlign
+https://github.com/ropensci/jqr
+https://github.com/ropensci/cyphr
+https://github.com/ropensci/ijtiff
+https://github.com/KorfLab/SNAP
+https://github.com/suchanek/proteusPy
+https://github.com/PaulHancock/Robbie
+https://github.com/Beryl-Jingxin/PyExoCross
+https://github.com/tsipkens/atems
+https://github.com/diCenzo-GC/Tn-Core-webserver
+https://github.com/ropensci/sofa
+https://github.com/rezeebe/orbitN
+https://github.com/NLeSC/spot
+https://github.com/telegraphic/fits2hdf
+https://github.com/spacetx/starfish
+https://github.com/SJTU-CGM/ivTerm
+https://github.com/pmelchior/shapelens
+https://github.com/ropensci/rrlite
+https://github.com/ejhigson/dyPolyChord
+https://github.com/shengjin/Nii
+https://github.com/arhstevens/DarkSage
+https://github.com/CosmoStat/Glimpse
+https://github.com/statgen/Minimac4
+https://github.com/narunlifescience/runcircos-gui
+https://github.com/semiautomaticgit/SemiAutomaticClassificationPlugin
+https://github.com/bbuchfink/diamond
+https://github.com/egjergo/GalCEM
+https://github.com/minaskar/hankl
+https://github.com/pymc-devs/pymc3
+https://github.com/sing-group/my-brain-seq
+https://github.com/martibosch/detectree
+https://github.com/JuliaArrays/BlockArrays.jl
+https://github.com/telatin/seqfu2
+https://github.com/NLeSC/UncertaintyVisualization
+https://github.com/fstrozzi/Fastool
+https://github.com/steven-murray/powerbox
+https://github.com/HeracleBT/vEMstitch
+https://github.com/ropensci/rWBclimate
+https://github.com/DEIB-GECO/CombSAFE
+https://github.com/nlesc-nano/swan
+https://github.com/ndrakos/ICICLE
+https://github.com/fcastagna/JoXSZ
+https://github.com/benedictpaten/marginPhase
+https://github.com/shikhar249/OnionMHC
+https://github.com/ntlucia/BrownDwarf-SpectralIndices
+https://github.com/solerjuan/astroHOG
+https://github.com/ncbi/igblast
+https://github.com/CMakePP/CMakePPLang
+https://github.com/aconley/mbb_emcee
+https://github.com/Gaius-Augustus/Tiberius
+https://github.com/jonathanHuwP/CrystalGrowthTracker
+https://github.com/ropensci/essurvey
+https://github.com/EnricoCorsaro/DIAMONDS
+https://github.com/keurfonluu/toughio
+https://github.com/McMahonCosmologyGroup/holosim-ml
+https://github.com/NLeSC/hadrianus-scripts
+https://github.com/shbhuk/barycorrpy
+https://github.com/cylammarco/ASPIRED
+https://github.com/m2aia/m2aia
+https://github.com/stammler/dustpylib
+https://github.com/PENTACLE-Team/PENTACLE
+https://github.com/ropensci/rnaturalearthhires
+https://github.com/NuGrid/NuPyCEE
+https://github.com/Planet-AI-GmbH/tfaip
+https://github.com/singularityhub/sregistry
+https://github.com/umbramortem/nProFit
+https://github.com/mcsiple/mmrefpoints
+https://github.com/VirtualPlantLab/PlantSimEngine.jl
+https://github.com/jdswinbank/Comet
+https://github.com/atchekho/harmpi
+https://github.com/IBMTRostock/GIFT
+https://github.com/ropensci/ssh
+https://github.com/mlr-org/mcboost
+https://github.com/C0PEP0D/otto
+https://github.com/zhangzzk/forklens
+https://github.com/warrickball/tomso
+https://github.com/trichter/yam
+https://github.com/rikenbit/iTensor
+https://github.com/ParkvilleData/MetaGenePipe
+https://github.com/carlodev/SyntheticEddyMethod.jl
+https://github.com/ropensci/nodbi
+https://github.com/biolab/orange3
+https://github.com/guangtunbenzhu/NonnegMFPy
+https://github.com/solislemuslab/minaa
+https://github.com/CosmoStat/shapepipe
+https://github.com/transientskp/pyse
+https://github.com/VasuLab/rgfrosh
+https://github.com/wanpinglee/MOSAIK
+https://github.com/AarhusCosmology/connect_public
+https://github.com/RoryChenXY/DataRepExp_public
+https://github.com/webbjj/m2mcluster
+https://github.com/metageni/FOCUS
+https://github.com/cblearn/cblearn
+https://github.com/Bahler-Lab/pyphe
+https://github.com/jpcoles/mosaic
+https://github.com/ryanhausen/fitsmap
+https://github.com/hasindu2008/slow5tools
+https://github.com/cusbg/MolArt
+https://github.com/Martindelosrios/cosmic-kite
+https://github.com/SIOSlab/exodetbox
+https://github.com/mkenworthy/exorings
+https://github.com/HuttleyLab/scitrack
+https://github.com/dpthorngren/PlanetSlicer
+https://github.com/exomishra/kobe
+https://github.com/exoclime/FastChem
+https://github.com/r-spatial/rgee
+https://github.com/WatsonGroupTCD/J2suscep
+https://github.com/smandal97/Sprout
+https://github.com/ropensci/rnaturalearthdata
+https://github.com/jmsdsouzaPhD/GWDALI
+https://github.com/swiftbiosciences/primerclip
+https://github.com/ImperialCollegeLondon/R2T2
+https://github.com/liuhong-jia/scAnno
+https://github.com/JLSteenwyk/ggpubfigs
+https://github.com/gogetdata/ggd-utils
+https://github.com/DEIB-GECO/BC_Intrinsic_subtyping
 https://github.com/Illumina/MarViN
-https://github.com/odelaneau/shapeit5
-https://github.com/conchoecia/pauvre
-https://github.com/danielemichilli/SpS
-https://github.com/JMLascar/SUSHI
-https://github.com/widdowquinn/pyani
-https://github.com/pjcigan/obsplanning
-https://github.com/AFD-Illinois/iharm3d
-https://github.com/webbjj/clustertools
-https://github.com/BobAubouin/Python_Anesthesia_Simulator
-https://github.com/radifar/PyPLIF-HIPPOS
-https://github.com/miracum/ahd2fhir
-https://github.com/eXtremeGravityInstitute/LISA-Massive-Black-Hole
-https://github.com/ropensci/wdman
-https://github.com/lifs-tools/jmzTab-m
-https://github.com/astromer-science/main-code
-https://github.com/genotoul-bioinfo/dgenies
-https://github.com/telatin/bamtocov
-https://github.com/ndaniel/fusioncatcher
-https://github.com/LQYoLH/CnnCrispr
-https://github.com/ropensci/geonames
-https://github.com/cpinte/casa_cube
-https://github.com/alexander-mead/collapse
-https://github.com/ABSESpy/ABSESpy
-https://github.com/loosolab/TOBIAS
-https://github.com/byuflowlab/GXBeam.jl
-https://github.com/RozanskiT/suppnet
-https://github.com/HUST-NingKang-Lab/ONN4MST
-https://github.com/NeamulKabir/EnsembleFam
-https://github.com/vdemichev/DiaNN
-https://github.com/deepmedic/deepmedic
-https://github.com/bmvdgeijn/WASP
-https://github.com/CRPropa/CRPropa3
-https://github.com/3D-e-Chem/kripodb
-https://github.com/steven-murray/mrpy
-https://github.com/HadrienG/InSilicoSeq
-https://github.com/MariaTsantaki/FASMA-synthesis
-https://github.com/davidkipping/flicker
-https://github.com/Schulik/aiolos
-https://github.com/steineggerlab/foldmason
-https://github.com/ropensci/cffr
-https://github.com/mdshw5/pyfaidx
-https://github.com/Cadaei-Yuvxvs/OSHy-X
-https://github.com/astrosupriyo/pyTANSPEC
-https://github.com/gotsunami/Youpi
-https://github.com/nimble-dev/nimbleHMC
-https://github.com/yuhaoran/CUBE
-https://github.com/ropensci/chromer
-https://github.com/seamplex/feenox
-https://github.com/YuSugihara/MutMap
-https://github.com/viash-io/viash
-https://github.com/brunettsp/myosothes
-https://github.com/psheehan/pdspy
-https://github.com/kevin218/Eureka
-https://github.com/rpoleski/MulensModel
-https://github.com/JuliaDynamics/TransitionsInTimeseries.jl
-https://github.com/daler/gffutils
-https://github.com/csb-toolbox/CSB
-https://github.com/ccsosa/GOCompare
-https://github.com/PynPoint/PynPoint
-https://github.com/thegenemyers/DAZZ_DB
-https://github.com/Jesper-Karsten/MBASC
-https://github.com/captain-exoplanet/misttborn
-https://github.com/astroboylrx/Rubble
-https://github.com/Hegghammer/daiR
-https://github.com/sfeeney/hh0
-https://github.com/aewallin/allantools
-https://github.com/gui11aume/starcode
-https://github.com/AdrianA-T/cytomorph
-https://github.com/baiwenjia/ukbb_cardiac
-https://github.com/UK-Digital-Heart-Project/4Dsegment
-https://github.com/Sydney-Informatics-Hub/geodata-harvester
-https://github.com/ropensci/RNeXML
+https://github.com/RajLabMSSM/echolocatoR
+https://github.com/yuliadm/mixComp
+https://github.com/DaehwanKimLab/hisat2
+https://github.com/fjprichard/PyAFBF
+https://github.com/benvanwerkhoven/kernel_tuner
+https://github.com/rudeboybert/forestecology
+https://github.com/mperezcarrasco/AnomalyALeRCE
+https://github.com/GlobalPathogenAnalysisService/read-it-and-keep
+https://github.com/sonjageorgievska/CClusTera
+https://github.com/LSSTDESC/WeakLensingDeblending
+https://github.com/MrShoenel/metrics-as-scores
+https://github.com/Gaiana/nirdust
+https://github.com/JamesPaynter/PyGRB
+https://github.com/bregaldo/pywst
+https://github.com/NLeSC/PattyData
+https://github.com/phenomecentre/nPYc-Toolbox
+https://github.com/drupke/ifsred
+https://github.com/nlesc-ave/ave-rest-service
+https://github.com/smoh/kinesis
+https://github.com/tbisbas/PDFchem
+https://github.com/ropensci/bold
+https://github.com/miguelcarcamov/gpuvmem
+https://github.com/equib/pyEQUIB
+https://github.com/EliabCanul/nauyaca
+https://github.com/drphilmarshall/HumVI
+https://github.com/DochtermannLab/BehavioralHeritability
+https://github.com/mj-will/nessai
+https://github.com/ropensci/beastier
+https://github.com/adrn/SuperFreq
+https://github.com/cbrnr/sigviewer
+https://github.com/jeschaef/Graph4Med
+https://github.com/SharmaLlama/ticktack
+https://github.com/SMTG-Bham/doped
+https://github.com/ropensci/babette
+https://github.com/oscaribv/exotrending
 https://github.com/wdecoster/nanoget
-https://github.com/ropensci/solrium
-https://github.com/rabrahm/ceres
-https://github.com/ekerrison/RadioSED
-https://github.com/shenwei356/kmcp
-https://github.com/ropensci/cld2
-https://github.com/IMMM-SFA/naturf
-https://github.com/IPK-BIT/divbrowse
-https://github.com/PeterDenton/ANA
-https://github.com/snijderlab/stitch
-https://github.com/schochastics/graphlayouts
-https://github.com/Smith42/pix2prof
-https://github.com/SwiftVISA/SwiftVISASwift
-https://github.com/gnave/Xgremlin
-https://github.com/ndrakos/ICICLE
-https://github.com/pymc-devs/pymc3
-https://github.com/seheonoh/2dbat
-https://github.com/molgenis/vibe-suppl
-https://github.com/ropensci/outsider.base
-https://github.com/chapmanb/bcbb
-https://github.com/TRASAL/AMBER
-https://github.com/mgckind/SparsePz
-https://github.com/Nic5472K/ScientificData2021_HealthGym
-https://github.com/hsci-r/finnish-media-scrapers
-https://github.com/smog-server/OpenSMOG
-https://github.com/discsim/frank
-https://github.com/CosmoStat/CosmoPMC
-https://github.com/metawards/MetaWards
-https://github.com/molgenis/Graph2VR
-https://github.com/Yingjie4Science/SDGdetector
-https://github.com/robynlm/sphereint
-https://github.com/schochastics/signnet
-https://github.com/panoptes-organization/panoptes
-https://github.com/DSIMB/MEDUSA
+https://github.com/exoclime/HELIOS-K
+https://github.com/timstaley/chimenea
+https://github.com/mpc-bioinformatics/CalibraCurve
+https://github.com/yogi-tud/space_gpu
+https://github.com/ouyang-lab/PRAS
+https://github.com/dcorre/otrain
+https://github.com/biocore-ntnu/ncls
+https://github.com/jradcliffe5/multi_self_cal
+https://github.com/creaneroDIAS/beamModelTester
+https://github.com/dellytools/sansa
+https://github.com/mavrix93/LightCurvesClassifier
+https://github.com/winger/hawking_net
+https://github.com/ICRAR/ProFit
+https://github.com/QuantEcon/QuantEcon.py
+https://github.com/arnikz/PIQMIe
+https://github.com/ArgonneCPAC/diffstar
+https://github.com/google/caliban
+https://github.com/JianjunTan-Beijing/LPI-CSFFR
+https://github.com/will-rowe/hulk
+https://github.com/zd1/telseq
+https://github.com/qcxms/QCxMS
+https://github.com/cwentland0/perform
+https://github.com/jgducoin/galclaim
+https://github.com/HERA-Team/matvis
+https://github.com/astro-informatics/QuantifAI
+https://github.com/DochtermannLab/G-PopComparison
+https://github.com/Kambrian/HBTplus
+https://github.com/EdoardoCarlesi/cmbeasy
+https://github.com/BobAubouin/Python_Anesthesia_Simulator
+https://github.com/hpc4cmb/toast
+https://github.com/legacysurvey/unwise_psf
+https://github.com/IndrajeetPatil/ggstatsplot
+https://github.com/yiwenstat/MCPCA_PopGen
+https://github.com/matchms/matchms
+https://github.com/CornellLabofOrnithology/auk
+https://github.com/abinit/abinit
+https://github.com/HWang-Summit/HCGrid
+https://github.com/Blosc/c-blosc
+https://github.com/SihanJiao/J-comb
+https://github.com/volkamerlab/opencadd
+https://github.com/0satoken/Eclairs
+https://github.com/epruesse/SINA
+https://github.com/ypmen/PulsarX
+https://github.com/tp2vis/distribute
+https://github.com/arviz-devs/preliz
+https://github.com/AllenInstitute/bmtk
+https://github.com/COMBINE-lab/simpleaf
+https://github.com/mc-imperial/multicore-test-harness
+https://github.com/mwanakijiji/rrlfe
+https://github.com/lskatz/SneakerNet
+https://github.com/RafiKueng/SpaghettiLens
+https://github.com/ropensci/rzmq
+https://github.com/Astroua/SCIMES
+https://github.com/bwvdnbro/CMacIonize
+https://github.com/vgteam/vg
+https://github.com/GenomiqueENS/toulligQC
+https://github.com/fabiopardo/qmap
+https://github.com/Michalychforever/AsPy
+https://github.com/mikessh/vdjtools
+https://github.com/jpober/21cmSense
+https://github.com/s-will/LocARNA
+https://github.com/COINtoolbox/DRACULA
+https://github.com/Kaixhin/FGLab
+https://github.com/SYalouz/QuantNBody
+https://github.com/IMMM-SFA/gamut
+https://github.com/joe-antognini/kozai
+https://github.com/cvbuchem/LavAtmos
+https://github.com/pmlmodelling/nctoolkit
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 https://github.com/justinmathias/isocalcR
-https://github.com/SWAT-Sheffield/SAC
-https://github.com/10XGenomics/bamtofastq
-https://github.com/jpahlers/LASR
-https://github.com/sdss/marvin
-https://github.com/vmalnathnambiar/exfilms
-https://github.com/husonlab/jloda
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+https://github.com/GijsMulders/epos
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+https://github.com/MayaWaves/mayawaves
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+https://github.com/adriancorrendo/metrica
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+https://github.com/sorenwacker/ProteomicsQC
+https://github.com/pmelsted/pizzly
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+https://github.com/tamarervin/SolAster
+https://github.com/ElsevierSoftwareX/SOFTX_2020_119
+https://github.com/keckert7/codes
+https://github.com/TingMAC/FrMLNet
+https://github.com/seheonoh/baygaud
+https://github.com/lime-rt/lime
+https://github.com/hiddenSymmetries/simsopt
+https://github.com/SchmollerLab/Cell_ACDC
+https://github.com/abschneider/StrainHub
+https://github.com/msolpera/pyUPMASK
+https://github.com/hydroframe/hf_hydrodata
 https://github.com/lbcb-sci/racon
-https://github.com/PENTACLE-Team/PENTACLE
-https://github.com/MikkelSchubert/adapterremoval
-https://github.com/Degiacomi-Lab/molearn
-https://github.com/sheinasim/HiFiAdapterFilt
-https://github.com/ekg/smithwaterman
-https://github.com/phpuech/OT_Analysis
-https://github.com/KTH-Nek5000/UQit
-https://github.com/dgerosa/spops
-https://github.com/ValeevGroup/mpqc
-https://github.com/telatin/seqfu2
+https://github.com/MRChemSoft/mrchem
+https://github.com/YuRui8879/MRASleepNet
+https://github.com/zpenoyre/OoT
+https://github.com/Romea/romea-core-common
+https://github.com/WMD-group/Eris
+https://github.com/bcerutti/Zeltron-code
+https://github.com/OBrink/RanDepict
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+https://github.com/SCM-NV/qmflows
+https://github.com/wtsi-hpag/HiLine
+https://github.com/Illumina/strelka
+https://github.com/artic-network/fieldbioinformatics
+https://github.com/flexible-atomic-code/fac
+https://github.com/aspuru-guzik-group/funsies
+https://github.com/DeepRank/PSSMGen
+https://github.com/MJTemple/qsogen
+https://github.com/databio/GenomicDistributions
+https://github.com/spyder-ide/spyder
+https://github.com/laristra/flecsph
+https://github.com/conchoecia/pauvre
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+https://github.com/rzellem/EXOTIC
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+https://github.com/mivp/encube
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+https://github.com/PEREGRINE-GW/saqqara
+https://github.com/hillerlab/GenomeAlignmentTools
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+https://github.com/NickSwainston/pulsar_spectra
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+https://github.com/phelelani/nf-rnaSeqCount
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+https://github.com/eWaterCycle/experiment-launcher
+https://github.com/sjforeman/bskit
+https://github.com/editeodoro/Bbarolo
+https://github.com/BPSB/combine-p-values-discrete
+https://github.com/Martindelosrios/ROGER
+https://github.com/NLeSC/nlesc-serverless-boilerplate
+https://github.com/ZJUFanLab/scTITANS
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+https://github.com/abacusorg/zeldovich-PLT
+https://github.com/bsafdi/stellarWakes
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+https://github.com/mpi4jax/mpi4jax
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+https://github.com/klee/klee
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+https://github.com/hotokezaka/HeatingRate
+https://github.com/luinix/pesco
+https://github.com/cylammarco/WDPhotTools
+https://github.com/GATB/MindTheGap
+https://github.com/damocles-code/damocles
+https://github.com/CRG-CNAG/anubis
+https://github.com/simoncasassus/ConeRot
+https://github.com/pierrehoudayer/RUBIS
+https://github.com/temken/obscura
+https://github.com/moeyensj/atm
+https://github.com/rdpstaff/classifier
+https://github.com/ANTsX/ANTs
+https://github.com/dglaeser/gridformat
+https://github.com/SwissClinicalTrialOrganisation/secuTrialR
+https://github.com/valerio-marra/CalPriorSNIa
+https://github.com/niemasd/CoaTran
+https://github.com/GRIT-RBSim/GRIT
+https://github.com/variomes/sibtm-variomes
+https://github.com/GooglingTheCancerGenome/sv-callers
+https://github.com/stinefm/relsad
+https://github.com/SoFiA-Admin/SoFiA-2
+https://github.com/GooglingTheCancerGenome/sv-channels
+https://github.com/Starlink/starlink
+https://github.com/918particle/AskaryanModule
+https://github.com/NLeSC/eAstroViz
+https://github.com/Quantum-Dynamics-Hub/libra-code
+https://github.com/fhcrc/seqmagick
+https://github.com/ropensci/cde
+https://github.com/xenon-middleware/xenon-flow
+https://github.com/MolecularAI/DockStreamCommunity
+https://github.com/chianti-atomic/ChiantiPy
+https://github.com/FePhyFoFum/phyx
+https://github.com/ropensci/grainchanger
+https://github.com/Jammy2211/PyAutoGalaxy
+https://github.com/oruhnau/when2heat
+https://github.com/gijut/gnucash
+https://github.com/sbird/GenPK
+https://github.com/ORNL/tx2
+https://github.com/QibangLiu/PDLSM-FEM_mpi
+https://github.com/martinfleis/clustergram
+https://github.com/lantunes/cellpylib
+https://github.com/aliojjati/MGCAMB
+https://github.com/ShixiangWang/sigminer
+https://github.com/fermisurfaces/IFermi
+https://github.com/samtools/htslib
+https://github.com/TheJacksonLaboratory/drug-synergy
+https://github.com/MNGuenther/allesfitter
+https://github.com/rrwick/Porechop
+https://github.com/DebduttaPaul/luminosity_function_of_sGRBs
+https://github.com/dbuscher/pois
+https://github.com/carronj/plancklens
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+https://github.com/mzkhalid039/DWBuilder
+https://github.com/mrc-ide/odin
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+https://github.com/exoclime/Helios-r2
+https://github.com/Dulab2020/ARMT
+https://github.com/kartheikiyer/dense_basis
+https://github.com/JulianBMunoz/21cmvFAST
+https://github.com/igmhub/baofit
+https://github.com/vidarsko/ComFiT
+https://github.com/jumphone/InferLoop
+https://github.com/zonca/python-qucs
+https://github.com/mlaparie/sigh
+https://github.com/rajeshmondal18/MAPS
+https://github.com/bwengals/ccsnmultivar
+https://github.com/Gaius-Augustus/GALBA
+https://github.com/asntech/intervene
+https://github.com/sina-cb/Tn-seqExplorer
+https://github.com/drphilmarshall/Pangloss
+https://github.com/Libensemble/libensemble
+https://github.com/COMBINE-lab/salmon
+https://github.com/lammps/lammps
+https://github.com/hues-platform/cesar-p-core
+https://github.com/hsso/crete
+https://github.com/PfizerRD/sit2standpy
+https://github.com/zheng-lh/UBER
+https://github.com/NSAPH-Software/GPCERF
+https://github.com/rabrahm/zaspe
+https://github.com/umbralcalc/helmpy
+https://github.com/timothydmorton/isochrones
+https://github.com/alejandrobll/py-sphviewer
+https://github.com/rikenbit/dcTensor
+https://github.com/iomega/paired-data-form
+https://github.com/glue-viz/glue
+https://github.com/nimble-dev/nimbleHMC
+https://github.com/transientskp/tkp
+https://github.com/sjbeckett/localcovid19now
+https://github.com/ropensci/spocc
+https://github.com/Sm00thix/IKPLS
+https://github.com/rivasiker/PhaseTypeR
+https://github.com/ropensci/outcomerate
+https://github.com/vcflib/tabixpp
+https://github.com/jmcbroome/BTE
+https://github.com/EMResearch/EvoMaster
 https://github.com/dgobbi/vtk-dicom
-https://github.com/CenterForMedicalGeneticsGhent/Hopla
-https://github.com/PabloVD/HAYASHI
-https://github.com/ncbi/SKESA
-https://github.com/ropensci/MtreeRing
-https://github.com/moustakas/iSEDfit
-https://github.com/tmcclintock/AReconstructionTool
-https://github.com/FastMLC/fMLC
-https://github.com/michaeltouati/ESVM
-https://github.com/acbecker/hotpants
-https://github.com/csj607/STaRS
-https://github.com/FrederickHuangLin/ANCOMBC
-https://github.com/chanzuckerberg/cellxgene
-https://github.com/PlanetHunters/tkmatrix
-https://github.com/tudelft3d/3dfier
-https://github.com/ropensci/awardFindR
-https://github.com/MikeSWang/HorizonGRound
-https://github.com/ropensci/circle
-https://github.com/ArenA-Crowds/Crowds
-https://github.com/pkgw/pwkit
-https://github.com/tsfloss/URecon
-https://github.com/kathlandgren/SWAMPE
-https://github.com/tholoien/XDGMM
-https://github.com/beastraban/INSANE
-https://github.com/cheginit/HyRiver
-https://github.com/PRIS-CV/DS-UI
-https://github.com/calboo/TAWAS
-https://github.com/dentalfloss1/transients-simulations
-https://github.com/agnetelundgaard/BALDR
-https://github.com/liangcheng-hrbmu/EnrichDO
-https://github.com/amkozlov/raxml-ng
-https://github.com/FEniCS/ffcx
-https://github.com/Acellera/htmd
-https://github.com/reneshbedre/bioinfokit
-https://github.com/astropy/astroscrappy
-https://github.com/ulelab/ultraplex
-https://github.com/cbg-ethz/LolliPop
-https://github.com/iipharma/pharmamind-molminer
-https://github.com/biosimulations/Biosimulations
-https://github.com/conda/pycosat
-https://github.com/ropensci/geojsonlint
-https://github.com/FreBio/komics
+https://github.com/ropensci/rrricanesdata
+https://github.com/Smith42/pix2prof
+https://github.com/thegenemyers/DAZZ_DB
+https://github.com/matteozennaro/reps
+https://github.com/jmhuie/Slicer-SegmentGeometry
+https://github.com/yjx1217/RecombineX
+https://github.com/tronsgaard/barycorr
+https://github.com/tdaylan/pcat
+https://github.com/sdrastro/NWelch
+https://github.com/subisarkar/JexoSim
+https://github.com/mlarichardson/ramses2hsim
+https://github.com/ArgonneCPAC/dsps
+https://github.com/medvedevgroup/varmatch
+https://github.com/YinanZhao21/SOAP_GPU
+https://github.com/jimmink/argslab
+https://github.com/ropensci-archive/monkeylearn
+https://github.com/darioizzo/dcgp
+https://github.com/ADAH-EviDENce/evidence
+https://github.com/elsner/arkcos
+https://github.com/gymreklab/GangSTR
+https://github.com/broadinstitute/cromwell
+https://github.com/kdeck/TTVFast
+https://github.com/trygvrad/DF-XRM_viz
+https://github.com/dixonlab/hic_breakfinder
+https://github.com/DEIB-GECO/genereg
+https://github.com/danielkoll/tidally-locked-coordinates
+https://github.com/AMReX-Astro/wdmerger
+https://github.com/solerjuan/magnetar
+https://github.com/rhyspoulton/OrbWeaver
+https://github.com/astro-informatics/comb
+https://github.com/OFFIS-DAI/Mango.jl
+https://github.com/perfanalytics/pose2sim
+https://github.com/jpierel14/sntd
+https://github.com/hanyue36/nanoplexer
+https://github.com/keatonb/Pyriod
+https://github.com/cagrikymk/JAX-ReaxFF
+https://github.com/ekg/fastahack
+https://github.com/buschlab/fhirspark
+https://github.com/cbottrell/RealSim
+https://github.com/simpeg/aurora
+https://github.com/ericagol/TTVFaster
+https://github.com/skiehl/wwz
+https://github.com/Starlink/ORAC-DR
+https://github.com/NIFTI-Imaging/nifti_clib
+https://github.com/bancaditalia/black-it
+https://github.com/latrop/DECA
+https://github.com/kuadrat/data-slicer
+https://github.com/AA-ALERT/Dedispersion
+https://github.com/tidymodels/infer
+https://github.com/pyspeckit/pyspeckit
+https://github.com/lsds/Crossbow
+https://github.com/CliMA/Oceananigans.jl
+https://github.com/ericsteinbring/Special-Blurring
+https://github.com/surhudm/savitzky_golay_with_errors
+https://github.com/j-erler/pymf
+https://github.com/daniellefenech/SERPent
+https://github.com/brentp/peddy
+https://github.com/drcandacemakedamoore/cleanX
+https://github.com/AlexanderJuestel/pyheatdemand
+https://github.com/rvaser/spoa
+https://github.com/nanoporetech/dorado
+https://github.com/jdhenshaw/scousepy
+https://github.com/dingyaozhang/Evitar
+https://github.com/tseemann/mlst
+https://github.com/VBlesius/RHRT
 https://github.com/SpaceML/GalaxyGAN
-https://github.com/timstaley/voevent-parse
-https://github.com/htjb/maxsmooth
-https://github.com/lsds/KungFu
-https://github.com/ClaraLage/Portfolio-Transition
-https://github.com/CEED/libCEED
-https://github.com/antoinemarchal/ROHSA
-https://github.com/cedrus-opensource/pyxid
-https://github.com/MOSAICS-NIH/MOSAICS
-https://github.com/ropensci/gitignore
-https://github.com/carlodev/SyntheticEddyMethod.jl
-https://github.com/hsocasnavarro/NICOLE
-https://github.com/sstadick/perbase
-https://github.com/biolab/orange3
-https://github.com/rksyouyou/SASOM-analysis
-https://github.com/VNNikolaidis/nnlib2Rcpp
-https://github.com/rajeshmondal18/N-body
-https://github.com/GrainLearning/grainLearning
-https://github.com/GambitBSM/gambit_1.3
-https://github.com/magnuspalmblad/shic
-https://github.com/JulianBMunoz/RelicFast
-https://github.com/devnums/pyheartlib
-https://github.com/DochtermannLab/BehavioralHeritability
-https://github.com/RTIInternational/gobbli
-https://github.com/Washington-University/CiftiLib
-https://github.com/STAR-Fusion/STAR-Fusion
-https://github.com/JD2112/methylr
-https://github.com/ajosephy/Clustering
-https://github.com/liuhong-jia/scAnno
-https://github.com/robynlm/ebweyl
-https://github.com/sb-ncbr/golem
-https://github.com/Kingsford-Group/scallop
-https://github.com/mc-imperial/jfs
-https://github.com/jakeret/tf_unet
-https://github.com/FitSNAP/FitSNAP
-https://github.com/iancze/PSOAP
-https://github.com/cwinpy/cwinpy
-https://github.com/samhforbes/PupillometryR
-https://github.com/LBC-LNBio/PyMOL-KVFinder-web-Tools
-https://github.com/deeptools/deepTools
-https://github.com/ropensci/rgpdd
-https://github.com/ropensci/beastier
-https://github.com/richteague/gofish
-https://github.com/wdecoster/nano-snakemake
-https://github.com/bioinfo-ut/GenomeTester4
-https://github.com/ropensci/rtika
-https://github.com/PaulHancock/Aegean
-https://github.com/fjdu/myRadex
-https://github.com/clwainwright/CosmoTransitions
-https://github.com/bradkav/NbodyIMRI
-https://github.com/mpound/comb
-https://github.com/LindleyLentati/Cobra
-https://github.com/gwastro/pycbc
-https://github.com/zhangjunpeng411/SCOM
-https://github.com/BackofenLab/IntaRNA
-https://github.com/maho3/ltu-ili
-https://github.com/ratt-ru/QuartiCal
-https://github.com/lanl/CosmicEmu
-https://github.com/ArgonneCPAC/diffmah
-https://github.com/jhayer/baargin
-https://github.com/JoeMcEwen/FAST-PT
-https://github.com/PathwayCommons/grounding-search
-https://github.com/riatelab/osrm
-https://github.com/Trovemaster/exocross
-https://github.com/MDAnalysis/mdanalysis
-https://github.com/mrc-ide/sircovid
+https://github.com/PyFstat/PyFstat
+https://github.com/surhudm/aum
+https://github.com/florian-lienhard/MM-LSD
+https://github.com/BASTAcode/BASTA
+https://github.com/GBLille/MassiveFold
+https://github.com/mateidavid/fast5
+https://github.com/ropensci/brranching
+https://github.com/astro-informatics/RequiSim
+https://github.com/ropensci/rbace
+https://github.com/Valdes-Tresanco-MS/NbThermo
+https://github.com/prdm0/ropenblas
+https://github.com/tldr-group/samba-web
+https://github.com/lh3/fermi-lite
+https://github.com/hdeeg/KvW
+https://github.com/bertrandplez/Turbospectrum2019
+https://github.com/leprojetcastor/castor
+https://github.com/fpavogt/E0102-VR
+https://github.com/psheehan/pdspy
+https://github.com/DESI-UR/VAST
+https://github.com/CSi-Studio/G-Aligner
+https://github.com/jsh58/Genrich
+https://github.com/moble/GWFrames
+https://github.com/RWTH-EBC/FiLiP
+https://github.com/ropensci/RSelenium
+https://github.com/skovaka/UNCALLED
+https://github.com/rcarragh/c212
+https://github.com/jah1994/PyTorchDIA
+https://github.com/obertscheiderfhwn/RTMsim
+https://github.com/kylemede/ExoSOFT
+https://github.com/mildpiggy/DEP2
+https://github.com/OpenGene/fastv
+https://github.com/jcolinhill/pyilc
+https://github.com/imcgreer/simqso
+https://github.com/souzamonteiro/cnatool
+https://github.com/LMJL-Alea/ktest
+https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener
+https://github.com/spacetelescope/specviz
+https://github.com/ConorMacBride/mcalf
+https://github.com/smsharma/dark-photons-perturbations
+https://github.com/SSDataLab/psfmachine
+https://github.com/AntonelliLab/seqcap_processor
+https://github.com/SimonPfeifer/cows
+https://github.com/mlipatov/paint_atmospheres
+https://github.com/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework
+https://github.com/GalacticDynamics-Oxford/Agama
+https://github.com/tvwenger/HII-Region-Models
+https://github.com/Valcin/BE_HaPPy
+https://github.com/bruce-chappell/SunnyNet
+https://github.com/DedalusProject/eigentools
+https://github.com/RECETOX/recetox-msfinder
+https://github.com/MoreiraLAB/or
+https://github.com/3D-e-Chem/sygma
+https://github.com/NASA-Planetary-Science/Pade-disk-code
+https://github.com/robynlm/ICPertFLRW
+https://github.com/desihub/fastspecfit
+https://github.com/theislab/scCODA
+https://github.com/jstuecker/adiabatic-tides
+https://github.com/jan-rybizki/gdr2_completeness
+https://github.com/bonsai-team/matam
+https://github.com/bxia888/CEFCIG
+https://github.com/neuroanatomy/thresholdmann
+https://github.com/kostergroup/SIMsalabim
+https://github.com/JGCRI/tethys
+https://github.com/MADHATdm/MADHAT
+https://github.com/multiply-org/sar-pre-processing
+https://github.com/bhi-kimlab/StressGenePred
+https://github.com/kcleal/gw
+https://github.com/OPUS-MaLab/opus_fold3
+https://github.com/ToHanwei/Genome2OR
+https://github.com/stammler/simframe
+https://github.com/TianlaiProject/tlpipe
+https://github.com/NLeSC/PattyAnalytics
+https://github.com/calebclass/Shiny-NanoTube
+https://github.com/Illumina/pyflow
+https://github.com/AWehrhahn/SME
+https://github.com/JGCRI/gcamfaostat
+https://github.com/neuroneural/brainchop
+https://github.com/DamynChipman/EllipticForest
+https://github.com/DrSoulain/PREVIS
+https://github.com/GalletFlorian/TATOO
+https://github.com/ropensci/geojsonlint
+https://github.com/ledatelescope/bifrost
+https://github.com/ageller/Firefly
+https://github.com/tiberioap/grav_waldo
+https://github.com/Guo-Jian-Wang/colfi
+https://github.com/ropensci/rdryad
+https://github.com/tseemann/VelvetOptimiser
+https://github.com/EnricoCorsaro/FAMED
+https://github.com/patrickfuchs/buildH
+https://github.com/he2016012996/CABnet
+https://github.com/yiling0210/APIR
+https://github.com/saberyoung/HAFFET
+https://github.com/ropensci/predictNMB
+https://github.com/tseemann/abricate
+https://github.com/torognes/swarm
+https://github.com/arnauqb/qwind
+https://github.com/i-VRESSE/workflow-builder
+https://github.com/esa/pagmo2-paper
+https://github.com/beagle-dev/beagle-lib
+https://github.com/epic-astronomy/EPIC
+https://github.com/IPK-BIT/divbrowse
+https://github.com/NLeSC/noodles
+https://github.com/orcasgit/python-fitbit
+https://github.com/kusmic/pycosie
+https://github.com/isovic/graphmap
+https://github.com/ProfessorBrunner/rc3-pipeline
+https://github.com/nickrodd/HDMSpectra
+https://github.com/hippke/communication
+https://github.com/vwesselkamp/ernie-extension
+https://github.com/InfOmics/PanDelos-frags
+https://github.com/NCAR/NCAR-Classic-Libraries-for-Geophysics
+https://github.com/GOVS-pack/GOVS
+https://github.com/infer-actively/pymdp
+https://github.com/malonge/RagTag
+https://github.com/HARMONI-ELT/HSIM
+https://github.com/BioSTEAMDevelopmentGroup/thermosteam
+https://github.com/ropensci/rcites
+https://github.com/lynx-x-ray-observatory/soxs
+https://github.com/AMSSwanglab/SpecVar
+https://github.com/pmelchior/skylens
+https://github.com/moldyn/msmhelper
+https://github.com/fatmasevinck/enetLTS
+https://github.com/adigenova/wengan
+https://github.com/panoptes-organization/panoptes
+https://github.com/brentp/mosdepth
+https://github.com/bradkav/WIMpy_NREFT
+https://github.com/ropensci/pangaear
+https://github.com/insilico/cncv
+https://github.com/jalombar/starsmasher
+https://github.com/ParisAstronomicalDataCentre/OPUS
+https://github.com/andymummeryastro/tidalspin
+https://github.com/seap-udea/iWander
+https://github.com/hildebra/LCA
+https://github.com/QuantumPlasma/SFQEDtoolkit
+https://github.com/curl/curl
+https://github.com/ropensci-review-tools/pkgcheck
+https://github.com/oliverphilcox/OneLoopBispectrum
+https://github.com/JaimeRZP/LimberJack.jl
+https://github.com/julie-forman-kay-lab/SPyCi-PDB
+https://github.com/mrc-ide/PhyDyn
+https://github.com/Zilong-Li/PCAone
+https://github.com/mjcarley/nbi
+https://github.com/SCM-NV/nano-qmflows
+https://github.com/benlansdell/ethome
+https://github.com/morriscb/the-wizz
+https://github.com/pyxnat/pyxnat
+https://github.com/ajshajib/LensingETC
+https://github.com/ctkelley/MultiPrecisionArrays.jl
+https://github.com/PynPoint/PynPoint
+https://github.com/szwiep/py_SBeLT
+https://github.com/andycasey/sick
+https://github.com/broadinstitute/CellBender
+https://github.com/octapps/octapps
 https://github.com/songningqiang/CosmoLED
-https://github.com/Illumina/canvas
-https://github.com/thomas0809/MolScribe
-https://github.com/exoml/plan-net
-https://github.com/ggciag/mandyoc
-https://github.com/aaryapatil/tapify
-https://github.com/ropensci/tidyhydat
-https://github.com/WGLab/InterVar
-https://github.com/saeyslab/PeacoQC
-https://github.com/atfrank/PyShifts
-https://github.com/mfruzan/HaploMaker
-https://github.com/BonsonW/slow5curl
-https://github.com/taranu/AllStarFit
-https://github.com/oschwengers/platon
-https://github.com/cmbant/getdist
-https://github.com/JohannesBuchner/PyMultiNest
-https://github.com/nickelnine37/pykronecker
-https://github.com/flekschas/jupyter-scatter
-https://github.com/nf-core/mag
-https://github.com/donovan-h-parks/RefineM
-https://github.com/sanger-pathogens/iva
-https://github.com/ropensci/spatsoc
-https://github.com/semaphoreP/whereistheplanet
-https://github.com/ulebreui/shark
-https://github.com/RiccardoBiondi/segmentation
-https://github.com/husonlab/malt
-https://github.com/fastpm/fastpm
-https://github.com/danhey/maelstrom
+https://github.com/Pas-Kapli/mptp
+https://github.com/rhayes777/PyAutoFit
+https://github.com/Xia-Yijie/Xponge
+https://github.com/lkreidberg/batman
+https://github.com/COMBINE-lab/terminus
+https://github.com/Materials-Consortia/OPTIMADE-Filter
+https://github.com/dutilh/CAT
+https://github.com/EGaraldi/ZInCo
+https://github.com/rabix/cwl-format
+https://github.com/lh3/bioawk
+https://github.com/ZjuLiangsl/mmkp
+https://github.com/idptools/metapredict
+https://github.com/exoclime/HELA
+https://github.com/ropensci/xslt
+https://github.com/sfeeney/hh0
+https://github.com/QZH2022/germline_flow
+https://github.com/ManuelBehrendt/Mera.jl
+https://github.com/gromacs/gromacs
+https://github.com/NSAPH-Software/CRE
+https://github.com/PacificBiosciences/pbbam
+https://github.com/ratt-ru/eidos
+https://github.com/bradkav/EarthScatterLikelihood
+https://github.com/tvwenger/kinematic_scaleheight
+https://github.com/IFB-ElixirFr/edam-browser
+https://github.com/recipy/recipy
+https://github.com/ImperialCollegeLondon/safedata
+https://github.com/adamjermyn/Skye
+https://github.com/V-Bernal/GeneNetTools
+https://github.com/elkebir-group/derna
+https://github.com/chenjj2/forecaster
+https://github.com/luizfelippesr/galmag
+https://github.com/ropensci/tidync
+https://github.com/wiederm/transformato
+https://github.com/desResLab/LINFA
+https://github.com/szpiech/selscan
+https://github.com/BU-hammerTeam/PyHammer
+https://github.com/ELELAB/LipidDyn
+https://github.com/rohinkumar/correlcalc
+https://github.com/freebayes/freebayes
+https://github.com/arjunsavel/cortecs
+https://github.com/WBK-Robotics/pybullet_industrial
+https://github.com/annajenul/UBayFS
+https://github.com/WGS-TB/MentaLiST
+https://github.com/MCTwo/MCMAC
+https://github.com/UgoLomoio/gtex_visualizer
+https://github.com/longfei8533/SDC
+https://github.com/gmrandazzo/libscientific
+https://github.com/kushaltirumala/WaldoInSky
+https://github.com/GRChombo/GRChombo
+https://github.com/drzeeshanahmed/JWES-Visual
+https://github.com/BiaPyX/BiaPy
+https://github.com/NLeSC/eEcology-SMS-reciever
+https://github.com/ablab/nerpa
+https://github.com/ropensci/nomisr
+https://github.com/ClapeyronThermo/GCIdentifier.jl
+https://github.com/teuben/QAC
+https://github.com/rfeldmann/leopy
+https://github.com/shergreen/SatGen
+https://github.com/CheerfulUser/TESSreduce
+https://github.com/lukapecnik/NiaAML
+https://github.com/isakro/shoredate
 https://github.com/RBrearton/islatu
-https://github.com/0satoken/Eclairs
-https://github.com/GooglingTheCancerGenome/sv-gen
-https://github.com/robashaw/libecpint
-https://github.com/tobias-dv-lnu/s4rdm3x
-https://github.com/xiaotiand/FunFor
-https://github.com/3D-e-Chem/knime-klifs
-https://github.com/seqcode/allo
-https://github.com/gourabghoshroy/MPVNN
-https://github.com/mateidavid/nanocall
-https://github.com/imperialchem/mrd-demo
-https://github.com/DEIB-GECO/VarSum
-https://github.com/BorgwardtLab/simbsig
-https://github.com/debian-tex/biber
-https://github.com/variomes/sibtm-variomes
-https://github.com/thomasdenecker/START-R
+https://github.com/ladsantos/p-winds
+https://github.com/virgesmith/neworder
+https://github.com/user29A/CCDLAB
+https://github.com/parallelwindfarms/byteparsing
+https://github.com/mmore500/hstrat
+https://github.com/cdfortenbach/JET
+https://github.com/TriPed-Robot/trip_kinematics
+https://github.com/JCGonzS/mechnetor
+https://github.com/jts/sga
+https://github.com/pmelchior/spender
+https://github.com/DTsuna/binary_precursor
+https://github.com/ropensci/rnoaa
+https://github.com/jkluter/MLG
+https://github.com/ropensci-org/pkgreviewr
+https://github.com/STAR-Fusion/STAR-Fusion
+https://github.com/bartongroup/RoSA
+https://github.com/bokunoBike/m6AGE
+https://github.com/geospace-code/h5fortran
+https://github.com/oleksulkowski/Syn-CpG-Spacer
+https://github.com/MDAnalysis/mdanalysis
+https://github.com/ropensci-archive/arresteddev
+https://github.com/LuisScoccola/persistable
+https://github.com/upb-lea/openmodelica-microgrid-gym
+https://github.com/MaudeDavidLab/GMEmbeddings
+https://github.com/husonlab/dendroscope3
+https://github.com/m-d-grunnill/MetaCast
+https://github.com/ropensci/outsider
+https://github.com/zkdtc/MLC_ELGs
+https://github.com/CM2S/piglot
+https://github.com/bioinform/somaticseq
+https://github.com/morphometry/papaya2
+https://github.com/korcsmarosgroup/TFlink
+https://github.com/3D-e-Chem/knime-gpcrdb
+https://github.com/multiwavelength/redshifts
+https://github.com/twesterhout/lattice-symmetries
+https://github.com/ericsteinbring/World_Observatory
+https://github.com/domschrei/mallob
+https://github.com/eweitz/ideogram
+https://github.com/Filter-Bubble/e2e-Dutch
+https://github.com/kno10/python-kmedoids
+https://github.com/JuliaSmoothOptimizers/DCISolver.jl
+https://github.com/UoMMIB/TFBMiner
+https://github.com/conda/conda-package-handling
+https://github.com/vfonov/DARQ
+https://github.com/jeertmans/DiffeRT2d
+https://github.com/HajkD/LTRpred
+https://github.com/1313e/PRISM
+https://github.com/opengenomebrowser/opengenomebrowser
+https://github.com/KiranLDA/PAMLr
+https://github.com/VU-BEAM-Lab/GENRE
+https://github.com/fredstro/hilbertmodgroup
+https://github.com/AusSRC/SoFiAX
+https://github.com/astropy/astroscrappy
+https://github.com/pipliggins/EVolve
+https://github.com/aschafu/PSSH2
+https://github.com/eisascience/HISTA
+https://github.com/pjcigan/multicolorfits
+https://github.com/djbard/ccogs
+https://github.com/andresmegias/gildas-class-python
+https://github.com/cabb99/open3spn2
+https://github.com/computational-chemical-biology/ChemWalker
+https://github.com/esperlman/JetCurry
+https://github.com/bcgsc/LongStitch
+https://github.com/sib-swiss/pftools3
+https://github.com/ImperialCollegeLondon/django-drf-filepond
+https://github.com/tobiasrausch/alfred
+https://github.com/mathworks/Simscape-Medical-Ventilator
+https://github.com/ICRAR/libprofit
+https://github.com/ablab/TandemTools
+https://github.com/LucIJspeert/eclipsr
+https://github.com/valentineap/pyprop8
+https://github.com/lightning-project/lightning
+https://github.com/FabianPlum/OmniTrax
+https://github.com/abs2k12/COCOA
+https://github.com/ropensci/rnassqs
+https://github.com/ngltr/sinaps
+https://github.com/deeptools/deeptools_intervals
+https://github.com/oneilsh/tidytensor
+https://github.com/AdriJD/beamconv
+https://github.com/loosolab/TOBIAS
+https://github.com/phelelani/nf-rnaSeqMetagen
+https://github.com/JIBSIL/DistriFS
+https://github.com/brettc/partitionfinder
+https://github.com/ropensci/oai
+https://github.com/astro-informatics/sleplet
+https://github.com/nlesc-nano/insilico-server
+https://github.com/voutcn/megahit
+https://github.com/sambit-giri/tools21cm
+https://github.com/soedinglab/metaeuk
+https://github.com/adcameron/ffancy
+https://github.com/delphes/delphes
+https://github.com/eWaterCycle/ewatercycle
+https://github.com/barklem/kaulakys
+https://github.com/DrafProject/elmada
+https://github.com/temken/DaMaSCUS-CRUST
+https://github.com/zblz/naima
+https://github.com/astrostat/LIRA
+https://github.com/ParaFly/ParaFly
+https://github.com/biocore-ntnu/epic2
+https://github.com/nasa/KeplerPORTs
+https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts
+https://github.com/JorenSix/Panako
+https://github.com/stevengj/nlopt
+https://github.com/daiqile96/OTTERS_paper
+https://github.com/PNNL-m-q/mza
+https://github.com/nathanchara/l1periodogram
+https://github.com/lehtiolab/msstitch
+https://github.com/ComputationalPhysiology/simcardems
+https://github.com/grazianoucci/game
+https://github.com/jsobeck/MOOG_SCAT
+https://github.com/ESMValGroup/ESMValTool
+https://github.com/DTsuna/CHIPS
+https://github.com/ropensci/rbhl
+https://github.com/openmsi/openmsistream
+https://github.com/DeepRank/Deeprank-GNN
+https://github.com/witseie/fpgaperm
+https://github.com/yangxiaolinyn/Lemon
+https://github.com/ThomasEdwardRiley/xpsi-pre-transfer
+https://github.com/glis-glis/loci
+https://github.com/mindearth/mobilkit
+https://github.com/jobovy/stream-stream
+https://github.com/Qiskit-Extensions/qiskit-dynamics
+https://github.com/NLeSC/pycoeman
+https://github.com/AlexanderLabWHOI/EUKulele
+https://github.com/tramarobin/fctSnPM
+https://github.com/phac-nml/staramr
+https://github.com/labjg/fibmeasure
+https://github.com/YaleTHz/nelly
+https://github.com/MMV-Lab/mmv_im2im
+https://github.com/oliverphilcox/EffectiveHalos
+https://github.com/ropensci/googleLanguageR
+https://github.com/rinikerlab/Ensembler
+https://github.com/cobilab/RFSC
+https://github.com/flekschas/regl-scatterplot
+https://github.com/nanoporetech/flappie
+https://github.com/ericfell/rfbzero
+https://github.com/astro-datalab/noaosourcecatalog
+https://github.com/jkbonfield/crumble
+https://github.com/rajeshmondal18/DviSukta
+https://github.com/kungfugo/BellDiagonalQudits.jl
+https://github.com/nevrome/bleiglas
+https://github.com/FergusDonnan/PAHDecomp
+https://github.com/jjmccollum/teiphy
+https://github.com/q1cui/discourseGT
+https://github.com/vbaliga/gaussplotR
 https://github.com/mscaudill/openseize
-https://github.com/songweizhi/Binning_refiner
-https://github.com/biocore-ntnu/pyranges
-https://github.com/OFFIS-DAI/Mango.jl
-https://github.com/ysekig/GPMsDB-dbtk
-https://github.com/stamatak/AxPcoords.dist
-https://github.com/ericsteinbring/Special-Blurring
-https://github.com/saphir746/BiobankRead-Bash
-https://github.com/kd0kfo/cosmology
-https://github.com/sbraden/circle-craters
-https://github.com/NASA-PDS/naif-pds4-bundler
-https://github.com/sdrastro/NWelch
-https://github.com/sczesla/PyAstronomy
-https://github.com/MesquiteProject/MesquiteCore
-https://github.com/tatekawa-astron/PN
-https://github.com/rferdman/afr
-https://github.com/D-Crake/HEADSS
-https://github.com/online-behaviour/machine-learning
-https://github.com/tseemann/mlst
-https://github.com/python-streamz/streamz
-https://github.com/nhejazi/haldensify
-https://github.com/wdecoster/nanofilt
-https://github.com/RemoteSensingTools/vSmartMOM.jl
-https://github.com/EdgeVPNio/evio
-https://github.com/fairtracks/omnipy_examples
-https://github.com/CederGroupHub/smol
-https://github.com/basp-group/BUQO
-https://github.com/samtools/htsjdk
-https://github.com/dylancromer/maszcal
-https://github.com/jradavenport/TheHammer
-https://github.com/jonathanHuwP/CrystalGrowthTracker
-https://github.com/ropensci/bomrang
-https://github.com/Lyalpha/spalipy
-https://github.com/mc-imperial/multicore-test-harness
-https://github.com/SciOmicsLab/PhenoComb
-https://github.com/pyamg/pyamg
-https://github.com/mpokorny/vysmaw
-https://github.com/purmortal/galcraft
-https://github.com/mne-tools/mne-icalabel
-https://github.com/moble/GWFrames
+https://github.com/danxhuber/galclassify
+https://github.com/JasonYangShadow/lpmx
+https://github.com/TNOCS/csWeb
+https://github.com/CRPropa/CRPropa3
+https://github.com/tensorlayer/TensorLayer
+https://github.com/gokalpcelik/ROHMMCLI
+https://github.com/cwru-pat/cmb-multipole_vectors
+https://github.com/PyDL/cat-puma
+https://github.com/Tomcxf/FASTdRNA
+https://github.com/seawander/centerRadon
+https://github.com/jeremysanders/ggm
+https://github.com/siminegroup/E2EDNA2
+https://github.com/amkram/shusher
+https://github.com/ropensci/allodb
+https://github.com/nespinoza/limb-darkening
+https://github.com/davideamato/NAPLES
+https://github.com/quatrope/feets
+https://github.com/pyplati/platipy
+https://github.com/mbhall88/rasusa
+https://github.com/caracal-pipeline/caracal
+https://github.com/cicirello/rho-mu
+https://github.com/evolbioinfo/bdei
+https://github.com/IMMM-SFA/naturf
+https://github.com/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions
+https://github.com/gilestrolab/ethoscope
+https://github.com/yupidevs/pactus
+https://github.com/TBLabFJD/DBofAFs
+https://github.com/JMLascar/SUSHI
+https://github.com/deepsphere/deepsphere-cosmo-tf1
+https://github.com/hippylib/soupy
+https://github.com/NETL-RIC/URC-Assessment-Method
+https://github.com/open2c/pairtools
+https://github.com/NLeSC/DiVE
+https://github.com/aneeshnaik/lintsampler
+https://github.com/ajshajib/dolphin
+https://github.com/spinicist/riesling
+https://github.com/ashleefv/ACEInhibPKPD
+https://github.com/beebdev/HARU
+https://github.com/standage/AEGeAn
+https://github.com/KULL-Centre/DEERpredict
+https://github.com/shirtsgroup/physical_validation
+https://github.com/ruggiero/clustep
+https://github.com/johentsch/ms3
+https://github.com/EvolBioInf/phylonium
+https://github.com/mrc-ide/covid19-forecasts-orderly
+https://github.com/wasserman-group/pyCADMium
+https://github.com/NLeSC/EEG-epilepsy-diagnosis
+https://github.com/pfeinsper/drone-swarm-search
+https://github.com/21cmfast/21cmEMU
+https://github.com/UK-Digital-Heart-Project/4Dsurvival
+https://github.com/alastair-droop/fqtools
+https://github.com/forrest-lab/scMatch
+https://github.com/ropensci/skynet
+https://github.com/SandyYuan/s3PCF
+https://github.com/mkelley/calviacat
+https://github.com/utrillalab/repromin
+https://github.com/csj607/STaRS
+https://github.com/arumugamlab/msamtools
+https://github.com/sieunhanbom04/support-exploration-matrix-factorization
+https://github.com/tariqdaouda/CAMAP
+https://github.com/ropensci-review-tools/roreviewapi
+https://github.com/WMD-group/MacroDensity
+https://github.com/DICP1810/SpotLink
+https://github.com/marberts/piar
+https://github.com/DrexelLenser/Lenser
+https://github.com/multiwavelength/gleam
+https://github.com/baoxingsong/AnchorWave
+https://github.com/AstroChem/VISIBLE
+https://github.com/ropensci/binman
+https://github.com/enthought/mayavi
+https://github.com/GregoryFaust/samblaster
+https://github.com/jonzink/EDI-Vetter
+https://github.com/cmateu/PyMGC3
+https://github.com/mjacob1002/Eir
+https://github.com/alekseyzimin/ufasta
+https://github.com/Dfupa/meTAline
+https://github.com/openvax/pyensembl
+https://github.com/thejasvibr/bat_beamshapes
+https://github.com/ropensci/rgnparser
+https://github.com/ropensci/mapr
+https://github.com/JensUweUlrich/ReadBouncer
+https://github.com/beckermr/calclens
+https://github.com/msm550/DMATIS
+https://github.com/VMBoehm/MADLens
+https://github.com/ropensci/mapscanner
+https://github.com/kuenzelab/ENDURE
+https://github.com/DataBiosphere/wdl-parsers
+https://github.com/Illumina/manta
+https://github.com/3D-e-Chem/knime-sygma
+https://github.com/noatgnu/catapult
+https://github.com/yuansliu/minirmd
+https://github.com/ropensci/pdftools
+https://github.com/hsergi/Roman_Coronagraph_ETC
+https://github.com/HIPS/autograd
+https://github.com/emerge-erc/ALminer
+https://github.com/GeneDx/scramble
+https://github.com/xavierdidelot/ClonalOrigin
+https://github.com/insightsengineering/rbmi
+https://github.com/mcgalcode/pylattica
+https://github.com/e-koch/FilFinder
+https://github.com/temuller/piscola
+https://github.com/evolbioinfo/treesimulator
+https://github.com/wf4ever/astrotaverna
+https://github.com/ropensci/mcbette
+https://github.com/ExpressionAnalysis/ea-utils
+https://github.com/rmaphoh/AutoMorph
+https://github.com/mzemp/halogen
+https://github.com/VarStarDetect/varstardetect
+https://github.com/h3abionet/genesis2
+https://github.com/HaowenZhang/TRINITY
+https://github.com/emunte/vaRHC
+https://github.com/jtksai/PyCOOL
+https://github.com/KVSlab/turtleFSI
+https://github.com/bedops/bedops
+https://github.com/parklab/LiRA
+https://github.com/Johannes-Sahlmann/pygacs
+https://github.com/BDI-pathogens/OpenABM-Covid19-model-paper
+https://github.com/HERA-Team/librarian
+https://github.com/biomedia-mira/drop2
+https://github.com/astrom-tom/specstack
 https://github.com/ropensci/rcoreoa
-https://github.com/changhoonhahn/provabgs
-https://github.com/ropensci/git2rdata
-https://github.com/pyspeckit/pyspeckit
-https://github.com/ropensci/geojsonio
-https://github.com/RETURN-project/BenchmarkRecovery
-https://github.com/Alymantara/pydoppler
-https://github.com/kgullikson88/Companion-Finder
-https://github.com/drwaseemsheikh/audiometry
-https://github.com/shenwei356/unikmer
-https://github.com/cicirello/rho-mu
-https://github.com/pcingola/SnpEff
-https://github.com/smirarab/sepp
-https://github.com/davidaknowles/leafcutter
-https://github.com/tjlcbakx/redshift-search-graphs
-https://github.com/ymocquar/HOODESolver.jl
-https://github.com/ziotom78/Healpix.jl
-https://github.com/ropensci/piggyback
-https://github.com/HERA-Team/hera_opm
-https://github.com/annehutter/astraeus
+https://github.com/SNEWS2/snewpy
+https://github.com/OnroerendErfgoed/atramhasis
+https://github.com/YihePang/DisoFLAG
+https://github.com/ryanvarley/ExoData
+https://github.com/tvwenger/kd
+https://github.com/JulianBMunoz/Zeus21
+https://github.com/nuc-astro/WinNet
+https://github.com/jfarek/alignstats
+https://github.com/MRCIEU/PHESANT
+https://github.com/mlafarga/raccoon
+https://github.com/e-merlin/eMERLIN_CASA_pipeline
+https://github.com/tud-hri/joan
+https://github.com/ERA-URBAN/fm128_radar
+https://github.com/cole-trapnell-lab/cufflinks
+https://github.com/mary77/scQcut
+https://github.com/GATB/gatb-core
+https://github.com/ejsafron/SATCHEL
+https://github.com/bihealth/sodar_core
+https://github.com/Clinical-Genomics-Umea/fraggler
+https://github.com/auckland-cosmo/interp-mc
+https://github.com/ladsantos/flatstar
+https://github.com/PyPO-dev/PyPO
+https://github.com/wwood/kingfisher-download
+https://github.com/easystats/effectsize
+https://github.com/sanjibs/bmcmc
+https://github.com/freesurfer/freesurfer
+https://github.com/gmbrandt/HTOF
+https://github.com/mgalardini/pyseer
+https://github.com/glasgowlab/MAGPIE
+https://github.com/jts/nanopolish
+https://github.com/MaximeWack/viroCapt
+https://github.com/Open-Minds-Lab/MRdataset
+https://github.com/spokenlanguage/platalea
+https://github.com/ofionnad/radiowinds
+https://github.com/jeremysanders/mbproj2
+https://github.com/mgm8/pyngham
+https://github.com/Illumina/akt
+https://github.com/sunpy/ndcube
+https://github.com/CDSP-SCPO/dataverse-feed
+https://github.com/lysovosyl/NanoDeep
+https://github.com/galizia-lab/pyview
+https://github.com/ExoSim/ExoSimPublic
+https://github.com/nicolet5/DiffCapAnalyzer
+https://github.com/ropensci/roadoi
+https://github.com/ziyewang/ARG_SHINE
+https://github.com/RoelofBerg/limereg
+https://github.com/BackmanLab/PWSpy
+https://github.com/chanzuckerberg/shasta
+https://github.com/AemulusProject/bias_emulator
+https://github.com/NeotomaDB/neotoma2
+https://github.com/HERA-Team/aipy
+https://github.com/ejhigson/perfectns
+https://github.com/matchms/ms2deepscore
+https://github.com/anddssan/CLOUDe
+https://github.com/candebellavita/vkompth
+https://github.com/nasa/ncompare
+https://github.com/IBM/topography-searcher
+https://github.com/mgieles/limepy
+https://github.com/thejackal360/OpenPelt-Public
+https://github.com/YSOVAR/YSOVAR
+https://github.com/Ensembl/WiggleTools
+https://github.com/SolavLab/DuoDIC
+https://github.com/yangfangs/KPP
+https://github.com/tahirulqamar/Deep-HPI-pred
+https://github.com/ropensci/rfishbase
+https://github.com/ComputationalRegulatoryGenomicsICL/TFBS
+https://github.com/alan-turing-institute/monitoring-ecosystem-resilience
+https://github.com/ELELAB/RosettaDDGPrediction
+https://github.com/ericcombiolab/LRTK
+https://github.com/gridap/GridapSolvers.jl
+https://github.com/songweizhi/Binning_refiner
+https://github.com/tseemann/shovill
+https://github.com/eggplantbren/Exoplanet
+https://github.com/JelfsMaterialsGroup/stk
+https://github.com/mzechmeister/viper
+https://github.com/ccsb-scripps/Illustrate
+https://github.com/mms-fcul/PypKa
+https://github.com/Anirbancosmo/Limpy
+https://github.com/jbrakensiek/CORBITS
+https://github.com/cschreib/egg
+https://github.com/alexander-pastukhov/bistablehistory
+https://github.com/tripathi/Atmospheric-Athena
+https://github.com/ropensci/comtradr
+https://github.com/anmolter/XLUR
+https://github.com/fbreitwieser/krakenuniq
+https://github.com/lpfworld/DMPNet
+https://github.com/sylabs/singularity
+https://github.com/RECETOX/MSMetaEnhancer
+https://github.com/realfastvla/realfast
+https://github.com/NLeSC/ExtJS-DateTime
+https://github.com/cuDisc/cuDisc
+https://github.com/aroffringa/aartfaac2ms
+https://github.com/nand1155/CausNet
+https://github.com/cbib/decontaminator
+https://github.com/jiujiezz/tsnad
+https://github.com/mbursa/sim5
+https://github.com/libdynd/dynd-python
+https://github.com/ICRAR/daliuge
+https://github.com/ropensci/rAvis
+https://github.com/gbrammer/grizli
+https://github.com/lskatz/fasten
+https://github.com/ropensci/patentsview
+https://github.com/JungleComputing/rocket
+https://github.com/laurazara/IgIDivA
+https://github.com/dkoboldt/varscan
+https://github.com/yangyongsan-bio/GREAP
+https://github.com/tariks/peakachu
+https://github.com/nlesc-sherlock/Rig
+https://github.com/ropensci/outsider.base
+https://github.com/bow/fsnviz
+https://github.com/bionlplab/GlaucomaNet
+https://github.com/ropensci/osfr
+https://github.com/ropensci/targets
+https://github.com/xdqso/xdqso
+https://github.com/Heldenkombinat/Logodetect
+https://github.com/mathjax/MathJax
+https://github.com/hishamhm/htop
+https://github.com/mtlam/PyPulse
+https://github.com/galtay/sphray
+https://github.com/vterron/lemon
+https://github.com/wullm/fastdf
+https://github.com/flu-crew/smot
+https://github.com/ropensci/opentripplanner
+https://github.com/klb2/qmkpy
+https://github.com/insilicomedicine/GENTRL
+https://github.com/YesselmanLab/rna_map
+https://github.com/wangchao-malab/DeepAc4C
+https://github.com/mjuric/galfast
+https://github.com/mikejohnson51/AHGestimation
+https://github.com/RuiningZHAO/wcpy
+https://github.com/garrelt/C2-Ray3Dm1D_Helium
+https://github.com/VChristiaens/vcal_sphere
+https://github.com/dmilakovic/QSOSIM10
+https://github.com/COINtoolbox/ActSNClass
+https://github.com/single-cell-genetics/cellsnp-lite
+https://github.com/bareid/cosmoxi2d
+https://github.com/dmentipl/plonk
+https://github.com/RuthAngus/GProtation
+https://github.com/vipinagrawal25/MeMC
+https://github.com/idefix-code/idefix
 https://github.com/swagnercarena/paltas
-https://github.com/BobChallen/Basic-mzml-plotter
-https://github.com/AtrCheema/SeqMetrics
-https://github.com/gem-pasteur/Integron_Finder
-https://github.com/exciting/excitingtools
-https://github.com/neuroanatomy/reorient
-https://github.com/mirochaj/ares
-https://github.com/arjunsavel/cortecs
-https://github.com/Natsiopoulos/ARDL
-https://github.com/sachsmc/cosinor
-https://github.com/nicokurtovic/SIMIO
-https://github.com/karel-brinda/ococo
-https://github.com/fjdu/rac-2d
-https://github.com/mes5k/amap-align
-https://github.com/candYgene/QTM
-https://github.com/aqtech-ca/mctreesearch4j
-https://github.com/msm550/DMATIS
-https://github.com/auctus-team/pycapacity
-https://github.com/martinjameswhite/ZeldovichRecon
-https://github.com/JGCRI/rmap
-https://github.com/nebblu/ReACT
-https://github.com/inpefess/gym-saturation
-https://github.com/free1234hm/CLAM
-https://github.com/ImperialCollegeLondon/covid19model
-https://github.com/hippke/tls
-https://github.com/elnjensen/Tapir
-https://github.com/igmhub/picca
+https://github.com/sisl/PyroRL
+https://github.com/cjneely10/EukMetaSanity
+https://github.com/markheckmann/OpenRepGrid.ic
+https://github.com/codidact/qpixel
+https://github.com/dolaver/calsagos
+https://github.com/r-cas/caracas
+https://github.com/CliMA/CalibrateEmulateSample.jl
+https://github.com/csuhjhjhj/GCNCMI
+https://github.com/c-zhou/yahs
+https://github.com/kircherlab/ReMM
+https://github.com/chfeder/turbulence_generator
+https://github.com/omuse-geoscience/omuse
+https://github.com/iontorrent/TS
+https://github.com/U-Alberta/ADaPT-ML
+https://github.com/purmortal/galcraft
+https://github.com/MAnalytics/opitools
+https://github.com/alicia-ziying-yang/conTEXT-explorer
+https://github.com/jdhenshaw/acorns
+https://github.com/ndaniyar/aphot
+https://github.com/andreasmang/claire
+https://github.com/schlafly/crowdsource
+https://github.com/devnums/pyheartlib
+https://github.com/vmplacco/linemake
+https://github.com/XGI-MSU/WDMWaveletTransforms
+https://github.com/radiocosmology/draco
+https://github.com/max-little/GRAPL
+https://github.com/dtanoglidis/DeepShadows
+https://github.com/ropensci/unifir
+https://github.com/exoplanet-dev/exoplanet
+https://github.com/Sydney-Informatics-Hub/geodata-harvester
+https://github.com/MicGrasso/bigonlight
+https://github.com/desmid/mview
+https://github.com/smaret/thindisk
+https://github.com/ejhigson/nestcheck
+https://github.com/sxs-collaboration/gwsurrogate
+https://github.com/jbytecode/JMcDM
+https://github.com/ropensci/daiquiri
+https://github.com/farhanferoz/BAMBI
+https://github.com/theLongLab/CATE
+https://github.com/cmgcds/fastvpinns
+https://github.com/m-a-d-n-e-s-s/madness
+https://github.com/mr-superonion/FPFS
+https://github.com/galaxy001/pirs
+https://github.com/emossoux/LIFELINE
+https://github.com/sfarrens/sf_deconvolve
+https://github.com/ropensci/chlorpromazineR
+https://github.com/austinpeel/herculens
+https://github.com/liulizhi1996/HPODNets
+https://github.com/AstroUGent/shadowfax
+https://github.com/jeffcsauer/arcos_arcospy_information
+https://github.com/rnikutta/rhocube
+https://github.com/sheinasim/HiFiAdapterFilt
+https://github.com/sklasfeld/DANPOS3
+https://github.com/thegenemyers/DALIGNER
+https://github.com/Keck-DataReductionPipelines/KCWI_DRP
+https://github.com/nlesc-sherlock/emma
+https://github.com/dgrin1/axionCAMB
+https://github.com/broadinstitute/gatk
+https://github.com/dirostri/CREPE
+https://github.com/ShaunFell/GRBoondi
+https://github.com/NLeSC/eEcology-Classification
+https://github.com/ot483/NetCom
+https://github.com/dh4gan/taktent
+https://github.com/cameronliang/bayesvp
+https://github.com/v-morello/riptide
+https://github.com/ucl-exoplanets/ExoGAN_public
+https://github.com/changhoonhahn/provabgs
+https://github.com/aasensio/sicon
+https://github.com/lh3/bedtk
+https://github.com/farhanferoz/SkyNet
+https://github.com/jluastro/PopSyCLE
+https://github.com/jfarek/xatlas
+https://github.com/mlhutchins/LWPC
+https://github.com/cancerit/alleleCount
+https://github.com/Samreay/ChainConsumer
+https://github.com/maickrau/GraphAligner
+https://github.com/kathlandgren/SWAMPE
+https://github.com/ropensci/taxize
+https://github.com/tseemann/samclip
+https://github.com/ThomasMBury/ewstools
+https://github.com/EbmeyerSt/GEnView
+https://github.com/astroCV/astroCV
+https://github.com/Mat-dp/mat-dp-core
+https://github.com/jodyphelan/TBProfiler
+https://github.com/barnabytprowe/imcom
+https://github.com/BioinfoUNIBA/REDItools2
+https://github.com/eelregit/covdisc
+https://github.com/mathopt/DynamicOED.jl
+https://github.com/tofflemire/saphires
+https://github.com/pierrexyz/pybird
+https://github.com/PacificBiosciences/pbmm2
+https://github.com/BasilioRuiz/SIR-code
 https://github.com/davidkipping/MAH
-https://github.com/astro-informatics/s2
-https://github.com/ImperialCollegeLondon/django-drf-filepond
-https://github.com/fkiwy/AstroToolBox
-https://github.com/WatsonLab/MAGpy
-https://github.com/neuralgraphs/diman
-https://github.com/JorenSix/Olaf
-https://github.com/oliverphilcox/Keplers-Goat-Herd
-https://github.com/jobovy/gaia_tools
-https://github.com/BGPS/distance-omnibus
+https://github.com/gear-genomics/dicey
+https://github.com/connectomicslab/connectomemapper3
 https://github.com/tfwillems/HipSTR
-https://github.com/OliverFHD/GPUniverse
-https://github.com/mikekatz04/BOWIE
-https://github.com/ropensci/tabulizer
-https://github.com/j-faria/kima
-https://github.com/jeremysanders/contbin
-https://github.com/cmateu/PyMGC3
-https://github.com/r-spatial/rgee
-https://github.com/BU-ISCIII/plasmidID
-https://github.com/q1cui/discourseGT
-https://github.com/tylunel/pvpumpingsystem
-https://github.com/epruesse/SINA
-https://github.com/NLeSC/nlesc-serverless-boilerplate
-https://github.com/bodenlab/GRASP
-https://github.com/ropensci/binman
-https://github.com/mithun218/GiNaCDE
-https://github.com/ropensci/conditionz
-https://github.com/ropensci/DoOR.functions
-https://github.com/jmcbroome/BTE
-https://github.com/SegataLab/lefse
-https://github.com/nmfs-fish-tools/SSMSE
-https://github.com/sanger-pathogens/snp-sites
-https://github.com/Gabaldonlab/crossmapper
-https://github.com/ropensci/phylocomr
+https://github.com/fmihpc/analysator
+https://github.com/basehc/IPEV
+https://github.com/pnsaevik/effluent
+https://github.com/ethankruse/koi3278
+https://github.com/AnantharamanLab/vRhyme
 https://github.com/ismael-mendoza/ShapeMeasurementFisherFormalism
-https://github.com/singularityhub/singularity-hpc
-https://github.com/JohannesBuchner/UltraNest
-https://github.com/low-sky/cprops
-https://github.com/bbfrederick/stabilitycalc
-https://github.com/NLeSC/SalientDetector-python
-https://github.com/andymummeryastro/tidalspin
-https://github.com/PyPSA/linopy
-https://github.com/Johannes-Sahlmann/pygacs
-https://github.com/shinichiroando/sashimi-w
-https://github.com/intake/intake
-https://github.com/tobiasrausch/alfred
-https://github.com/alessiospuriomancini/cosmopower
-https://github.com/oliverphilcox/EffectiveHalos
-https://github.com/ACCarnall/bagpipes
-https://github.com/DaehwanKimLab/hisat2
-https://github.com/jlenain/flaapluc
-https://github.com/eggplantbren/Exoplanet
-https://github.com/ajshajib/dolphin
-https://github.com/mggg/ecological-inference
-https://github.com/ChileanVirtualObservatory/indexing_utfsm
-https://github.com/gperezs/StarcNet
-https://github.com/adcameron/ffancy
-https://github.com/siminegroup/E2EDNA2
-https://github.com/PolymathicAI/AstroCLIP
-https://github.com/nye17/javelin
-https://github.com/ronnyerrmann/HiFLEx
-https://github.com/aamedinburgh/igmtransmission
-https://github.com/BIMSBbioinfo/pigx_scrnaseq
-https://github.com/ropensci/NLMR
-https://github.com/adamjermyn/Skye
-https://github.com/Single-Cell-Graph-Learning/scSGL
+https://github.com/mkelley/zchecker
+https://github.com/taranu/AllStarFit
+https://github.com/afeinstein20/stella
+https://github.com/cmillion/gPhoton
+https://github.com/GRTLCollaboration/GRFolres
+https://github.com/EMBL-Hentze-group/htseq-clip
+https://github.com/2decomp-fft/2decomp-fft
+https://github.com/anchal-009/SAVED21cm
+https://github.com/statgen/demuxlet
+https://github.com/debbiemarkslab/plmc
+https://github.com/oliverphilcox/Keplers-Goat-Herd
+https://github.com/ropensci/popler
+https://github.com/AtrCheema/SeqMetrics
+https://github.com/aaryapatil/tapify
+https://github.com/Nicholaswogan/photochem
+https://github.com/FraunhoferIWES/foxes
+https://github.com/etal/cnvkit
+https://github.com/czbiohub-sf/Rapid-QC-MS
+https://github.com/Kkritos/Rapster
+https://github.com/gui11aume/starcode
+https://github.com/jonas/tig
+https://github.com/aviadpi/SparseBLS
+https://github.com/sjteresi/TE_Density
+https://github.com/ropensci/eia
+https://github.com/luntergroup/octopus
+https://github.com/ropensci/pendulum
+https://github.com/parkus/fiducial_flare
+https://github.com/ropensci/iheatmapr
+https://github.com/3D-e-Chem/kripodb
+https://github.com/cytham/nanovar
+https://github.com/ropenscilabs/allcontributors
+https://github.com/minzastro/unidam
+https://github.com/glenco/lensed
+https://github.com/xenon-middleware/xenon-grpc
+https://github.com/BezuidenhoutMC/SeeKAT
+https://github.com/daniloceano/LorenzCycleToolkit
+https://github.com/rqtl/qtl2
+https://github.com/neslusan/BELTCROSS2
+https://github.com/ismaelpessa/PyMUSE
+https://github.com/fair-workflows/nanopub
+https://github.com/tatekawa-astron/PN
+https://github.com/shinichiroando/sashimi-c
+https://github.com/UNSW-CEEM/nempy
+https://github.com/OpenWaterAnalytics/EPyT
+https://github.com/AP6YC/ClusterValidityIndices.jl
+https://github.com/AndreinaCastillo/Genie_manuscript_data_analysis
+https://github.com/cmayer/BaitFisher-package
+https://github.com/tcherninceline/PPInteractions
+https://github.com/damonge/schNell
+https://github.com/MartianColonist/POSEIDON
+https://github.com/bethgelab/foolbox
+https://github.com/EmmanuelSchaan/LensQuEst
+https://github.com/sbird/fake_spectra
+https://github.com/ropensci/datapack
+https://github.com/ropensci/refimpact
+https://github.com/stefanoMP/massiveGST
+https://github.com/molgenis/Graph2VR
+https://github.com/devries/analytic_infall
+https://github.com/BioGenies/AMPBenchmark
+https://github.com/hjens/lasso_spectra
+https://github.com/upb-lea/gym-electric-motor
+https://github.com/phylo42/EPIK
+https://github.com/LSSTDESC/sacc
+https://github.com/sfschen/velocileptors
+https://github.com/nonlocalmodels/NLMech
+https://github.com/TravisWheelerLab/NINJA
+https://github.com/snugel/cas-offinder
+https://github.com/BlueBrain/BlueCelluLab
+https://github.com/RichardMoot/LinearOne
+https://github.com/occupationMeasurement/occupationMeasurement
+https://github.com/rasg-affiliates/healvis
+https://github.com/IUCNN/IUCNN
+https://github.com/t-brandt/acorns-adi
+https://github.com/tmux/tmux
+https://github.com/eWaterCycle/era5cli
+https://github.com/cbrueffer/tophat-recondition
+https://github.com/ELeeAstro/gCMCRT
+https://github.com/broadinstitute/wot
+https://github.com/nanoporetech/pomoxis
+https://github.com/IftachSadeh/ANNZ
+https://github.com/DataIntellSystLab/KARGA
+https://github.com/dentalfloss1/transients-simulations
+https://github.com/bwa-mem2/bwa-mem2
+https://github.com/SebastianBocquet/pygtc
+https://github.com/thomgrand/fim-python
+https://github.com/ajeldorado/falco-matlab
+https://github.com/JASHunt/Snapdragons
+https://github.com/numpy/numpy
+https://github.com/galaxyproject/ansible-tiaas2
+https://github.com/CosmoLike/CosmoCov
+https://github.com/SAMI-Galaxy-Survey/sami
+https://github.com/odb9402/CNNPeaks
+https://github.com/CEMeNT-PSAAP/MCDC
+https://github.com/Gabaldonlab/crossmapper
+https://github.com/ropensci/cld3
+https://github.com/tseemann/prokka
+https://github.com/yesint/EnCurv
+https://github.com/ropensci/tiler
+https://github.com/danielkoll/PyRADS
+https://github.com/compomics/DeepLC
+https://github.com/XSLiuLab/Seq2Neo
+https://github.com/cieslar/Indri
+https://github.com/dvallesp/vortex-p
+https://github.com/Natsiopoulos/ARDL
+https://github.com/gtw2i/GA-Galaxy
+https://github.com/eWaterCycle/setup-singularity
+https://github.com/ccsosa/GOCompare
+https://github.com/grburgess/popsynth
+https://github.com/BradhamLab/icat
+https://github.com/cjbarrie/academictwitteR
+https://github.com/agreenbaum/gsgs
+https://github.com/UBC-Astrophysics/kd-match
+https://github.com/sidmohite/nimbus-astro
+https://github.com/GambitBSM/gambit_1.3
+https://github.com/WSWUP/agweather-qaqc
+https://github.com/steineggerlab/foldseek
+https://github.com/masadcv/FastGeodis
+https://github.com/jiahecui/SenAOReFoc
+https://github.com/ChemaPalencia/M_SMiLe
+https://github.com/aiproteomics/aiproteomics
+https://github.com/SMTG-UCL/ShakeNBreak
+https://github.com/awsteiner/bamr
+https://github.com/Jonathanfreundlich/CuspCore
+https://github.com/Shyentist/fish-r-man
+https://github.com/hz1010/FIPRESCI_data_analysis
+https://github.com/CMakePP/CMinx
+https://github.com/xiaofengsong/pHisPred
+https://github.com/benstahl92/deepSIP
+https://github.com/pmelchior/shear-stacking
+https://github.com/DEIB-GECO/OpenGDC
+https://github.com/andersdot/photoParallax
+https://github.com/dlakaplan/pulsarsurveyscraper
+https://github.com/WhaleConnect/whaleconnect
+https://github.com/EddyRivasLab/infernal
+https://github.com/tholoien/empiriciSN
 https://github.com/nanoporetech/scrappie
-https://github.com/BMILAB/scLINE
-https://github.com/SebOliver/PCA
+https://github.com/SamDuffield/bmm
+https://github.com/theGreatHerrLebert/rustims
+https://github.com/ghislainv/forestatrisk
+https://github.com/ahmedmagds/GNUVID
+https://github.com/ABM4ALL/Melodie
+https://github.com/ArtificialStellarPopulations/ArtPop
+https://github.com/sonoUnoTeam/sonoUno-desktop
+https://github.com/xdf-modules/libxdf
+https://github.com/DeaglanBartlett/symbolic_pofk
+https://github.com/cbg-ethz/LolliPop
+https://github.com/afarahi/PoPE
+https://github.com/wullm/zwindstroom
+https://github.com/EddyRivasLab/hmmer
+https://github.com/davidpamos/MultiModes
+https://github.com/INCEPTdk/adaptr
+https://github.com/CrowdTruth/CrowdTruth
+https://github.com/Illumina/SpliceAI
+https://github.com/ogotoh/spaln
+https://github.com/trevisanj/PFANT
+https://github.com/elizakempton/Exo_Transmit
+https://github.com/fair-software/fairtally
+https://github.com/ratt-ru/QuartiCal
+https://github.com/AA-ALERT/AMBER
+https://github.com/alejandroaviles/fkpt
+https://github.com/steven-murray/mrpy
+https://github.com/ptaconet/bdd_rntaaf
+https://github.com/Griffan/VerifyBamID
+https://github.com/adamgayoso/totalVI_reproducibility
+https://github.com/afeinstein20/eleanor
+https://github.com/firedrakeproject/gusto
+https://github.com/SCM-NV/pyZacros
+https://github.com/JinxinMonash/PhageGE
+https://github.com/spacetelescope/imexam
+https://github.com/ropensci/PostcodesioR
+https://github.com/cwinpy/cwinpy
+https://github.com/neurogenomics/MAGMA_Celltyping
+https://github.com/VChristiaens/special
+https://github.com/mingzehuang/latentcor
+https://github.com/fchuffar/protopackage
+https://github.com/AstarVienna/AnisoCADO
+https://github.com/tjlcbakx/redshift-search-graphs
+https://github.com/cgrudz/DataAssimilationBenchmarks.jl
+https://github.com/LoganAMorrison/blackthorn
+https://github.com/deeptools/pyBigWig
+https://github.com/johnlees/seer
+https://github.com/YeoLab/clipper
+https://github.com/meinardmueller/synctoolbox
+https://github.com/radio1988/OneStopRNAseq
+https://github.com/FastMLC/fMLC
+https://github.com/valboz/VBBinaryLensing
+https://github.com/ropensci-org/rotemplate
+https://github.com/deepmodeling/DMFF
+https://github.com/astrogilda/mirkwood
+https://github.com/cdominik/optool
+https://github.com/julblarod/SOPHISM
+https://github.com/iraf-community/pyraf
+https://github.com/kendomaniac/docker4seq
+https://github.com/segasai/rvspecfit
+https://github.com/Cantera/cantera
+https://github.com/nrao/UniPOPS
+https://github.com/EESI/Complet-Plus
+https://github.com/astro-informatics/stringgen
+https://github.com/lberaldoesilva/naif
+https://github.com/marcelm/tinyalign
+https://github.com/smithlabcode/abismal
+https://github.com/ropensci/treedata.table
+https://github.com/vcflib/vcflib
+https://github.com/LucyMcGowan/tipr
+https://github.com/amusecode/TRES
+https://github.com/davemlz/eemont
+https://github.com/tum-esm/pyra
+https://github.com/ropensci/antanym
+https://github.com/sjforeman/StringFast
+https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
+https://github.com/ImperialCollegeLondon/adam
+https://github.com/popgenmethods/smcpp
+https://github.com/DrMarc/slab
+https://github.com/EcoJulia/SimpleSDMLayers.jl
+https://github.com/astro-friedel/CADRE
+https://github.com/AstarVienna/Pyckles
 https://github.com/erikbern/ann-benchmarks
-https://github.com/DReichLab/EIG
-https://github.com/CajoterBraak/demc2
-https://github.com/ropensci/DataSpaceR
-https://github.com/NLeSC-GO-common-infrastructure/marzipan
-https://github.com/rhdtownsend/gyre
-https://github.com/ropensci/CoordinateCleaner
-https://github.com/jeremysanders/dsdeproj
-https://github.com/kennethcarrell/ATARRI
-https://github.com/amusecode/amuse
-https://github.com/choosehappy/HoverFast
-https://github.com/hetalang/heta-compiler
-https://github.com/grazianoucci/cosmic_variance
-https://github.com/cvbuchem/LavAtmos
-https://github.com/Valires/er-evaluation
-https://github.com/amerand/SPIPS
-https://github.com/NarlikarLab/exoDIVERSITY
-https://github.com/linuxscout/pyarabic
-https://github.com/ncbi/sra-tools
-https://github.com/bolverk/huji-rich
-https://github.com/rae-holcomb/SpinSpotter
-https://github.com/juliotux/astropop
-https://github.com/ncbi/TPMCalculator
-https://github.com/Eventdisplay/Eventdisplay
-https://github.com/bonsai-team/matam
-https://github.com/esa/polyhedral-gravity-model
-https://github.com/DirectDM/directdm-py
-https://github.com/scikit-tda/DREiMac
-https://github.com/nhcrisp/ADBSat
-https://github.com/bcgsc/abyss
-https://github.com/leprojetcastor/castor
-https://github.com/NiallJeffrey/DeepMass
-https://github.com/SpeedyWeather/SpeedyWeather.jl
-https://github.com/phenology/cgc
-https://github.com/jolie/tquery
-https://github.com/fredstro/hilbertmodgroup
-https://github.com/maserlib/ExPRES
-https://github.com/e-koch/FilFinder
-https://github.com/musoke/UltraDark.jl
-https://github.com/haiyang1986/TVAR
-https://github.com/Illumina/ExpansionHunterDenovo
-https://github.com/marco-oliva/pfp
-https://github.com/YihanWangAstro/SpaceHub
-https://github.com/nithyanandan/PRISim
-https://github.com/fenderglass/Ragout
+https://github.com/smsharma/mining-for-substructure-lens
+https://github.com/deeptools/HiCExplorer
+https://github.com/molgenis/vibe-suppl
+https://github.com/pavanvidem/chira
+https://github.com/krober10nd/SeismicMesh
+https://github.com/introlab/opentera
+https://github.com/danielemelini/ALMA3
+https://github.com/rajewsky-lab/spacemake
+https://github.com/pedronachtigall/ToxCodAn-Genome
+https://github.com/bids-standard/bids-validator
+https://github.com/OpenGene/fastp
+https://github.com/ropensci/rsnps
+https://github.com/fumi-github/omicwas
+https://github.com/muctadir/lama
+https://github.com/isaackd/wcloud
+https://github.com/shbhuk/mrexo
+https://github.com/jmackereth/orbit-estimation
+https://github.com/LTeinturier/Cloud-Killer-
+https://github.com/mikhailklassen/protostellar_evolution
+https://github.com/intake/intake
+https://github.com/Kingsford-Group/scallop
+https://github.com/barklem/hlinop
+https://github.com/UM-PEPL/HallThruster.jl
+https://github.com/FabioRigamonti/pyADfit
+https://github.com/FAU-LAP/NOMAD-CAMELS
+https://github.com/gogrean/PyXel
+https://github.com/ptiede/Comrade.jl
 https://github.com/benallard/galileo
-https://github.com/vmmunoza/nuHawkHunter
-https://github.com/TRACER-LULab/Hyperelastics.jl
-https://github.com/soedinglab/metaeuk
-https://github.com/copasi/basico
-https://github.com/mne-tools/mne-python
-https://github.com/Samreay/ChainConsumer
-https://github.com/rpetit3/fastq-scan
-https://github.com/ropensci/rnaturalearth
-https://github.com/adriancorrendo/metrica
-https://github.com/MFaymon/spINAR
-https://github.com/archaeo-pteryx/PowerSpecCovFFT
-https://github.com/ketch/nodepy
-https://github.com/cinemascience/cinema_snap
-https://github.com/CosmoStatGW/DarkSirensStat
-https://github.com/hsergi/Roman_Coronagraph_ETC
-https://github.com/0x0f0f0f/Metatheory.jl
-https://github.com/ropensci/camsRad
-https://github.com/paulbrodersen/netgraph
-https://github.com/etal/cnvkit
-https://github.com/bcalden/ClusterPyXT
-https://github.com/yangxiaolinyn/Lemon
-https://github.com/NLeSC/noodles
-https://github.com/bulik/ldsc
-https://github.com/LalResearchGroup/CNV-clinviewer
-https://github.com/ejikeugba/gofcat
-https://github.com/PyPSA/atlite
-https://github.com/codemeleon/seqPanther
-https://github.com/kim554/wdec
-https://github.com/sanger-pathogens/ariba
-https://github.com/dtamayo/reboundx
-https://github.com/nla-group/fABBA
-https://github.com/ropensci/googleLanguageR
-https://github.com/opengeos/segment-geospatial
-https://github.com/CoolWorlds/ExoPriors
-https://github.com/benyhh/ml-telescope-pointing-correction
-https://github.com/rickhelmus/patRoon
-https://github.com/matteolucchini1/BHJet
-https://github.com/Sulstice/cocktail-shaker
-https://github.com/finagle29/DBSP_DRP
-https://github.com/SAIL-Labs/AMICAL
-https://github.com/lanl/swiftbat_python
-https://github.com/shenlab-sinai/ngsplot
-https://github.com/hknd23/idcempy
-https://github.com/ropensci/webmockr
-https://github.com/jacob-long/jtools
-https://github.com/bcgsc/NanoSim
-https://github.com/ExoSim/ExoSimPublic
-https://github.com/jbattat/pep_core
-https://github.com/cdominik/optool
-https://github.com/KeplerGO/kadenza
-https://github.com/GlobalPathogenAnalysisService/read-it-and-keep
-https://github.com/gmarcais/Quorum
-https://github.com/amberbiology/scribl
-https://github.com/ORNL/Equilipy
-https://github.com/H-E-L-P/XID_plus
-https://github.com/rochoa85/NTDHealth_Forms
-https://github.com/cbg-ethz/shorah
-https://github.com/natelust/least_asymmetry
-https://github.com/lh3/fermi-lite
-https://github.com/IMMM-SFA/statemodify
-https://github.com/MichaelSel/edoJS
-https://github.com/jiujiezz/tsnad
-https://github.com/3D-e-Chem/knime-kripodb
-https://github.com/ropensci/rdatacite
-https://github.com/jamesaird/FAST
-https://github.com/FCS-analysis/PyCorrFit
-https://github.com/CFSAN-Biostatistics/SeroTools
-https://github.com/natir/rustyread
-https://github.com/DKMS/Hapl-o-Mat_WinBin
-https://github.com/Illumina/SpliceAI
-https://github.com/atakan/KeplerSolver
-https://github.com/openmsi/openmsistream
-https://github.com/brentp/goleft
+https://github.com/xCDAT/xcdat
+https://github.com/toros-astro/corral
+https://github.com/sevenstarknight/LINEARSupervisedClassification
+https://github.com/tmcclintock/AReconstructionTool
+https://github.com/ketch/RK-Opt
+https://github.com/Joost987/MONDPMesh
+https://github.com/xxsds/DYNAMIC
+https://github.com/ablab/spades
+https://github.com/A-Davies/LensCNN
+https://github.com/OttoStruve/muler
+https://github.com/ropensci/fingertipsR
+https://github.com/jeremysanders/contbin
+https://github.com/yi-jia-li/cue
+https://github.com/cas-bioinf/rboAnalyzer
+https://github.com/BapMel/mesocalc
+https://github.com/spectrapepper/spectrapepper
+https://github.com/jradavenport/FBEYE
+https://github.com/ropensci/citesdb
+https://github.com/noraeisner/LATTE
+https://github.com/sebastien-plutniak/archeoviz
+https://github.com/niceume/datasailr
+https://github.com/carronj/lenspyx
+https://github.com/lifs-tools/jmzTab-m
+https://github.com/JesusTorrado/extrapops
+https://github.com/sparks-baird/xtal2png
+https://github.com/nasa/simupy-flight
+https://github.com/rjtanner/StarburstPy
+https://github.com/citation-file-format/cff-converter-python
+https://github.com/chapmanb/bcbb
+https://github.com/qMRLab/qMRLab
+https://github.com/astro-informatics/s2fft
+https://github.com/markblokpoel/mathlib
+https://github.com/wdecoster/chopper
+https://github.com/thachnguyen/CRISPRnano
+https://github.com/gdrouart/MrMoose
+https://github.com/Filter-Bubble/stroll
+https://github.com/jhparkastro/gpcal
+https://github.com/thegenemyers/DAMAPPER
+https://github.com/sisl/POMDPStressTesting.jl
+https://github.com/brandon-rhodes/python-jplephem
+https://github.com/marbl/Mash
+https://github.com/NLeSC/docker-couch-admin
+https://github.com/max0x7ba/atomic_queue
+https://github.com/zenitani/OpenMHD
+https://github.com/pangenome/smoothxg
+https://github.com/xpsi-group/xpsi
+https://github.com/iancze/DiskJockey
+https://github.com/citiususc/veryfasttree
+https://github.com/Adamtaranto/Yanagiba
+https://github.com/robynlm/ebweyl
+https://github.com/asgr/ProPane
+https://github.com/mmahmoudian/sivs
+https://github.com/spacetelescope/exovetter
+https://github.com/FengTaoSMU/MOBFinder
+https://github.com/PEREGRINE-GW/peregrine
+https://github.com/dfki-ric-underactuated-lab/torque_limited_simple_pendulum
+https://github.com/florpi/sunbird
+https://github.com/marseille-proteomique/DIAgui
+https://github.com/antoinediez/Sisyphe
+https://github.com/KALMUS-Color-Toolkit/KALMUS
+https://github.com/ropensci/rromeo
+https://github.com/LCOGT/neoexchange
+https://github.com/jorisparet/partycls
+https://github.com/ImperialCollegeLondon/pytest_template_application
+https://github.com/IonRepo/IonDiff
+https://github.com/EhsanGharibNezhad/TelescopeML
+https://github.com/olivares-j/Kalkayotl
+https://github.com/benhid/Sequoya
+https://github.com/statOmics/tradeSeqPaper
+https://github.com/PyTables/PyTables
+https://github.com/ropensci/osmplotr
+https://github.com/samtools/samtools
+https://github.com/zhongqiu1245/CCS-Net
+https://github.com/ropensci/ecoengine
+https://github.com/ToyotaCRDL/mahos
+https://github.com/planck-npipe/lollipop
+https://github.com/reedacartwright/dawg
+https://github.com/astrobrent/itera
+https://github.com/ruggiero/galstep
+https://github.com/alphapsa/PIPE
+https://github.com/maho3/ltu-ili
+https://github.com/neurogeriatricskiel/KielMAT
+https://github.com/binzhulab/SUITOR
+https://github.com/MonashSmartStructures/ospgrillage
+https://github.com/NLeSC/lokum
+https://github.com/dipol-uf/DIPOL-UF
+https://github.com/NeuralEnsemble/elephant
+https://github.com/DirectDM/directdm-py
+https://github.com/mazzalab/pyntacle
+https://github.com/mroosmalen/nanosv
+https://github.com/dieghernan/tidyterra
+https://github.com/jdiasn/lidarSuit
+https://github.com/Ruiz-HCI-Lab/ggMOB
+https://github.com/exosports/transit
+https://github.com/marbl/MashMap
+https://github.com/Midnighter/dependency-info
+https://github.com/ixkael/Delight
+https://github.com/JDabringhausen/BiPoS1
 https://github.com/kkjawz/coref-ee
-https://github.com/jeertmans/DiffeRT2d
-https://github.com/HEML/HEML
-https://github.com/NLeSC/docker-couch-admin
-https://github.com/dfujim/bfit
-https://github.com/lskatz/SneakerNet
-https://github.com/KolmogorovLab/Severus
-https://github.com/CollinErickson/GauPro
-https://github.com/comprna/SUPPA
-https://github.com/mrc-ide/drjacoby
-https://github.com/gbernstein/gbdes
-https://github.com/smithlabcode/dnmtools
-https://github.com/cgrudz/DataAssimilationBenchmarks.jl
-https://github.com/rikenbit/dcTensor
-https://github.com/alan-turing-institute/Palaeoanalytics
-https://github.com/SchedMD/slurm
-https://github.com/deepskies/deeplenstronomy
-https://github.com/mlysy/LocalCop
-https://github.com/mdlreyes/void-dwarf-analysis
-https://github.com/petigura/terra
-https://github.com/afeinstein20/stella
-https://github.com/tldr-group/samba-web
 https://github.com/alesantuz/musclesyneRgies
-https://github.com/vijayvarma392/binaryBHexp
-https://github.com/nlesc-nano/CAT
-https://github.com/JuliaMatrices/BlockBandedMatrices.jl
-https://github.com/DEIB-GECO/CombSAFE
-https://github.com/candYgene/pbg-ld
-https://github.com/mdolab/pygeo
-https://github.com/Yu-Group/veridical-flow
-https://github.com/fmihpc/analysator
-https://github.com/afarahi/PoPE
-https://github.com/abmantz/lrgs
-https://github.com/dwkim78/upsilon
-https://github.com/surhh/nfitsview
-https://github.com/JeffLCoughlin/EphemMatch
-https://github.com/ComputationalPhysiology/simcardems
-https://github.com/mikesmitka/truvot
-https://github.com/3D-e-Chem/knime-plants
-https://github.com/basp-group/SARA-PPD
-https://github.com/TeraTrees/TIPP
-https://github.com/ropensci/jqr
-https://github.com/rauschenberger/joinet
-https://github.com/msyazwanfaid/hilalpy
+https://github.com/SuperKogito/spafe
+https://github.com/ropensci/zbank
+https://github.com/rhenkin/visxhclust
+https://github.com/aothmane-control/Algebraic-differentiators
+https://github.com/IanevskiAleksandr/sc-type
+https://github.com/Lnasellentin/DALI
+https://github.com/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner
+https://github.com/yangfangs/test_GFICLEE
+https://github.com/WMD-group/CarrierCapture.jl
+https://github.com/ropensci/cleanEHR
+https://github.com/leonzheng2/efficient-butterfly
+https://github.com/ropensci/rtweet
+https://github.com/reneheller/pile-up
+https://github.com/ropensci/getlandsat
+https://github.com/cog-imperial/GPdoemd
+https://github.com/esteinig/nanoq
+https://github.com/NREL/G2Aero
+https://github.com/jharno/cubep3m
 https://github.com/samconnolly/DELightcurveSimulation
-https://github.com/jan-rybizki/gdr2_completeness
-https://github.com/python-hydro/pyro2
-https://github.com/jydu/maffilter
-https://github.com/astro-informatics/flag-archive
-https://github.com/rmjarvis/Piff
-https://github.com/jodyphelan/tb-ml
-https://github.com/theislab/scvelo
-https://github.com/anuradhawick/LRBinner
-https://github.com/aalhossary/pyemgpipeline
-https://github.com/SSAGESproject/SSAGES
-https://github.com/HingeAssembler/HINGE
-https://github.com/atmos-cloud-sim-uj/PyMPDATA
-https://github.com/davi-rodrigues/NAVanalysis
-https://github.com/AmruteLab/PyChelator
-https://github.com/gmzsebastian/FLEET
-https://github.com/jdswinbank/Comet
-https://github.com/3D-e-Chem/knime-sygma
-https://github.com/Markusjsommer/BalrogCPP
-https://github.com/ChenfuShi/HiChIP_peaks
-https://github.com/JeffLCoughlin/skye
-https://github.com/3D-e-Chem/knime-gpcrdb
-https://github.com/rgerum/pylustrator
-https://github.com/ropensci/europepmc
-https://github.com/aprsa/ebai
-https://github.com/matthias-mayr/Cartesian-Impedance-Controller
-https://github.com/hsinnan75/MapCaller
-https://github.com/Peppags/CNN-SVR
-https://github.com/olivecha/guitarsounds
-https://github.com/martinfleis/clustergram
-https://github.com/jo276/EvapMass
-https://github.com/gridap/GridapSolvers.jl
-https://github.com/HajimeKawahara/exojax
-https://github.com/XGI-MSU/PyIMRPhenomD
-https://github.com/VALENCE-software/VALENCE
-https://github.com/AA-ALERT/frbcatdb
-https://github.com/eScatter/pyelsepa
-https://github.com/esplint/IRACpm
-https://github.com/ParisAstronomicalDataCentre/OPUS
-https://github.com/sensein/etelemetry-client
-https://github.com/APGG-Lab/APGG
-https://github.com/benjaminbolling/RSW
-https://github.com/gagneurlab/drop
-https://github.com/ProSolo/prosolo
-https://github.com/jordanlab/STing
-https://github.com/seisman/HinetPy
-https://github.com/ogotoh/spaln
-https://github.com/Yash-10/beta-sgp
-https://github.com/ahoward-cf/ppmap
-https://github.com/lazzati-astro/MCRaT
-https://github.com/aineniamh/snipit
-https://github.com/HalHaggard/EARL
-https://github.com/ropensci-archive/reviewer
-https://github.com/oschwengers/bakta
-https://github.com/m-a-d-n-e-s-s/madness
-https://github.com/DamCB/tyssue
-https://github.com/genome/bam-readcount
-https://github.com/JungleComputing/rocket
-https://github.com/sandmanns/CopyDetective
-https://github.com/ofionnad/radiowinds
-https://github.com/klevis-a/kinematics-vis
-https://github.com/MASILab/pyPheWAS
-https://github.com/meinardmueller/libfmp
-https://github.com/OSS-Lab/ChemChaste
-https://github.com/odelaneau/GLIMPSE
-https://github.com/JDabringhausen/BiPoS1
-https://github.com/hnikaein/stark
-https://github.com/WorkflowConversion/CTDopts
-https://github.com/lh3/bfc
-https://github.com/NETL-RIC/URC-Assessment-Method
-https://github.com/aL3x-O-o-Hung/CAT-Net
-https://github.com/broadinstitute/cromwell
-https://github.com/NLeSC/SalientDescriptor-matlab
-https://github.com/moble/scri
-https://github.com/e-merlin/eMERLIN_CASA_pipeline
-https://github.com/CadenArmstrong/simuTrans
-https://github.com/aarondotter/iso
-https://github.com/sterinaldi/FIGARO
-https://github.com/telegraphic/PyGSM
-https://github.com/nigyta/dfast_core
-https://github.com/sheydenreich/threepoint
+https://github.com/musevlt/origin
+https://github.com/CullanHowlett/l-picola
+https://github.com/AlgoLab/shark
+https://github.com/candYgene/siga
+https://github.com/kwkx/IPRP
+https://github.com/quatrope/ProperImage
+https://github.com/TRIQS/solid_dmft
+https://github.com/gear-genomics/tracy
+https://github.com/psi4/psi4
+https://github.com/ReGIS-org/regis-v2
+https://github.com/undark-lab/sstrax
+https://github.com/jdcphysics/validation
+https://github.com/mrc-ide/squire
+https://github.com/tuoyl/tat-pulsar
+https://github.com/scikit-image/scikit-image
+https://github.com/silburt/DeepMoon
+https://github.com/gbernstein/pixmappy
+https://github.com/KIT-MBS/pyrexMD
+https://github.com/asancpt/caffsim
+https://github.com/kkrismer/scansite-tools
+https://github.com/RTIP/artip
+https://github.com/GabrielaCR/AGNfitter
+https://github.com/elizabethnewman/hessQuik
+https://github.com/dawolfgang/MRrelation
+https://github.com/pmoulos/metaseqR2
+https://github.com/pmelchior/skymapper
+https://github.com/vocalpy/crowsetta
+https://github.com/inpefess/gym-saturation
+https://github.com/HinodeXRT/xrtpy
+https://github.com/ClusterMonteCarlo/CMC-COSMIC
+https://github.com/CoolWorlds/ExoPriors
+https://github.com/ropensci/gutenbergr
+https://github.com/vedantchandra/wdtools
+https://github.com/hytrac/amber
+https://github.com/HUST-NingKang-Lab/ONN4MST
+https://github.com/ropensci/bomrang
+https://github.com/4pisky/fourpisky-core
+https://github.com/flekschas/jupyter-scatter
+https://github.com/mbursa/disk-models
+https://github.com/nithyanandan/PRISim
+https://github.com/klho/FLAM
+https://github.com/egstrom/cluster-in-a-box
+https://github.com/hablabx/rfast
+https://github.com/STEllAR-GROUP/octotiger
+https://github.com/ropensci/MtreeRing
+https://github.com/girder/viime
+https://github.com/beastraban/INSANE
+https://github.com/dnonatar/Sequoia
+https://github.com/secimTools/SECIMTools
+https://github.com/rajeshmondal18/N-body
+https://github.com/pirl-unc/ace
+https://github.com/DorianDepriester/MTEX2Gmsh
+https://github.com/Nicole-DH/ACP-MLC
+https://github.com/rferdman/afr
+https://github.com/mariakotouza/TRIP-Tool
+https://github.com/siavashk/pycpd
+https://github.com/cespinosa/pyHIIexplorerV2
+https://github.com/smirarab/sepp
+https://github.com/mrc-ide/covid-sim
+https://github.com/BobChallen/Basic-mzml-plotter
+https://github.com/eliotayache/GAMMA
+https://github.com/elliohow/fMRI_ROI_Analysis_Tool
+https://github.com/VU-IVM/VineCopulas
+https://github.com/JuliaDynamics/TransitionsInTimeseries.jl
+https://github.com/cc646201081/CircSI-SSL
+https://github.com/johncwok/CategoricalTimeSeries.jl
+https://github.com/JuliaHCI/ADI.jl
+https://github.com/milicolazo/Pyedra
+https://github.com/geodynamics/burnman
+https://github.com/vals/umis
+https://github.com/lucian-ilie/DELPHI
+https://github.com/lsds/Saber
+https://github.com/adrn/pyia
+https://github.com/chemfiles/chemfiles
+https://github.com/Stuermer/EchelleSimulator
+https://github.com/ImperialCollegeLondon/WInc3D
+https://github.com/damonge/CUTE
+https://github.com/Pranab-JD/LeXInt
+https://github.com/carlosandrepaes/GaPP
+https://github.com/ropensci/scrubr
+https://github.com/chanzuckerberg/cellxgene
+https://github.com/CosmoStatGW/DarkSirensStat
+https://github.com/londumas/redvsblue
+https://github.com/BioMeCIS-Lab/OpenOmics
+https://github.com/biod/sambamba
+https://github.com/OwenWard/ppdiag
+https://github.com/kimberg/voxbo
+https://github.com/seheonoh/2dbat
+https://github.com/cosmo-ethz/seek
+https://github.com/BartoszBartmanski/StoSpa2
+https://github.com/lpantano/seqcluster
+https://github.com/matteolucchini1/BHJet
+https://github.com/fdebras/ECLIPS3D
+https://github.com/HCGB-IGTP/spaTyper
+https://github.com/ifilot/edp
+https://github.com/ERA-URBAN/netcdf2littler
+https://github.com/oscaribv/citlalicue
+https://github.com/jadexter/grtrans
+https://github.com/rauschenberger/transreg
+https://github.com/openscm/openscm-twolayermodel
+https://github.com/husonlab/jloda
+https://github.com/arangrhie/merfin
+https://github.com/EpistasisLab/tpot
+https://github.com/liamedeiros/ehtplot
+https://github.com/rksyouyou/SASOM-analysis
+https://github.com/davidsoergel/rtax
+https://github.com/RoryBarnes/EqTide
+https://github.com/katholt/Kaptive
+https://github.com/awsteiner/o2scl
+https://github.com/ropensci/plotly
+https://github.com/xenon-middleware/xenon
+https://github.com/bacpop/ska.rust
+https://github.com/JuliaOcean/AIBECS.jl
+https://github.com/lofar-astron/RMextract
+https://github.com/jesford/cluster-lensing
+https://github.com/UK-Digital-Heart-Project/4Dsegment
+https://github.com/kavonrtep/dante
+https://github.com/JolleJolles/pirecorder
+https://github.com/genner-lab/meta-fish-lib
+https://github.com/transientskp/lpf
+https://github.com/sanger-pathogens/Bio-Tradis
+https://github.com/PaulHancock/Aegean
+https://github.com/metawards/MetaWards
+https://github.com/sebastien-plutniak/archeofrag
+https://github.com/jw-lin/cbeam
+https://github.com/NLeSC/ahn-pointcloud-viewer-ws
+https://github.com/phenology/cgc
+https://github.com/mrazomej/AutoEncoderToolkit.jl
+https://github.com/haiyang1986/TVAR
+https://github.com/BenNordick/HiLoop
+https://github.com/MikeSWang/Triumvirate
+https://github.com/ropensci/taxlist
+https://github.com/FRBs/FRB
+https://github.com/NCIP/visda
+https://github.com/inonchiu/ComEst
+https://github.com/YangLab/RNAlight
+https://github.com/dealii/dealii
+https://github.com/sanger-pathogens/iva
+https://github.com/ropensci/hoardr
+https://github.com/nlesc-nano/flamingo
+https://github.com/Social-Evolution-and-Behavior/anTraX
 https://github.com/polca/unfold
-https://github.com/mtlam/PyPulse
-https://github.com/ViennaRNA/RNAblueprint
-https://github.com/genomicepidemiology/ARGprofiler
-https://github.com/OncoRNALab/CiLiQuant
-https://github.com/ropensci/DoOR.data
-https://github.com/alexander-mead/HMcode
-https://github.com/xianggebenben/GraphSL
-https://github.com/pmoulos/metaseqR2
-https://github.com/LBNL-ETA/MSWH
-https://github.com/giswqs/leafmap
-https://github.com/ryneches/SuchTree
-https://github.com/Varnani/pywd2015-qt5
-https://github.com/NLESC-JCER/QMCTorch
-https://github.com/brentp/kexpr-nim
-https://github.com/FofanovLab/mtsv_tools
-https://github.com/mroosmalen/nanosv
-https://github.com/snad-space/coniferest
-https://github.com/stammler/dustpy
-https://github.com/JuliaArrays/LazyArrays.jl
-https://github.com/SJaffa/Jplots
-https://github.com/parklab/SCAN2
-https://github.com/astroboylrx/PLAN
+https://github.com/ropensci/piggyback
+https://github.com/lsds/sgx-lkl
+https://github.com/palaeoware/trevosim
+https://github.com/BIMSBbioinfo/pigx_scrnaseq
 https://github.com/rvaser/bioparser
-https://github.com/BU-hammerTeam/PyHammer
-https://github.com/lh3/minimap2
-https://github.com/BlueBrain/BlueCelluLab
-https://github.com/dvallesp/ASOHF
-https://github.com/timothydmorton/isochrones
-https://github.com/jpierel14/sntd
-https://github.com/jenniferlu717/Bracken
-https://github.com/tkzeng/Pangolin
-https://github.com/marcelm/dnaio
-https://github.com/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions
-https://github.com/jodyphelan/TBProfiler
-https://github.com/ropensci/opencage
-https://github.com/diCenzo-GC/Tn-Core-webserver
-https://github.com/ropensci/addressable
-https://github.com/Libsharp/libsharp
-https://github.com/galaxyproject/ansible-tiaas2
-https://github.com/jeffcsauer/arcos_arcospy_information
-https://github.com/gdefazio/kMetaShot
+https://github.com/aymgal/COOLEST
+https://github.com/hippke/PyOSE
+https://github.com/Yash-10/beta-sgp
+https://github.com/snijderlab/stitch
+https://github.com/lsds/SEEP
+https://github.com/dpryan79/libBigWig
+https://github.com/alex-b-davis/gubas
+https://github.com/yrjia1015/CRISPRCasStack
+https://github.com/FlowModelingControl/flowtorch
+https://github.com/DLR-RM/BlenderProc
+https://github.com/3D-e-Chem/knime-klifs
+https://github.com/PyPSA/atlite
+https://github.com/0x0f0f0f/Metatheory.jl
+https://github.com/KeplerGO/K2fov
+https://github.com/ColemanRHarris/mxnorm
+https://github.com/ropensci/jsonvalidate
+https://github.com/nf-core/viralrecon
+https://github.com/richteague/bettermoments
+https://github.com/spectralcode/OCTproZ
+https://github.com/mkargo/pipeline
+https://github.com/nvalimak/fsm-lite
+https://github.com/Rocsg/FijiRelax
+https://github.com/RainthunderWYL/LoRD
+https://github.com/magnusmanske/snpomatic
+https://github.com/matthiaslee/Xmatch
+https://github.com/jboynyc/textnets
+https://github.com/clawpack/clawpack
+https://github.com/philres/ngmlr
+https://github.com/zhanghe9704/tpsa
+https://github.com/MeasureTransport/MParT
+https://github.com/fchuffar/dmethr
+https://github.com/CatarinaMMarques/FisherCosmology
+https://github.com/Hoohm/CITE-seq-Count
+https://github.com/tresoldi/ngesh
+https://github.com/philbull/RadioFisher
+https://github.com/caimeng2/seesus
+https://github.com/ropensci/cffr
+https://github.com/yatiml/yatiml
+https://github.com/choosehappy/HoverFast
+https://github.com/lamyj/odil
+https://github.com/ncbi/ngs
+https://github.com/mrc-ide/EpiEstim
+https://github.com/Xomics/ACTIONdemonstrator_workflow
+https://github.com/cwieder/py-ssPA
+https://github.com/gausspy/gausspy
+https://github.com/changhoonhahn/haloflow
+https://github.com/kbarbary/nestle
+https://github.com/paumard/cubefit
+https://github.com/annehutter/astraeus
+https://github.com/cajohare/NeutrinoFog
+https://github.com/Martindelosrios/MeSsI
+https://github.com/undark-lab/albatross
+https://github.com/chrishales/pieflag
+https://github.com/Nextomics/nextsv
+https://github.com/HajimeKawahara/juwvid
+https://github.com/ejeschke/ginga
+https://github.com/veragluscevic/dmdd
+https://github.com/IKNL/vantage6
+https://github.com/gourabghoshroy/MPVNN
+https://github.com/ValeevGroup/mpqc
+https://github.com/mchalela/GriSPy
+https://github.com/jbussemaker/SBArchOpt
+https://github.com/vimc/orderly
+https://github.com/ImperialCollegeLondon/covid19model
+https://github.com/learningsimulator/learningsimulator
+https://github.com/agshumate/LiftoffTools
+https://github.com/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys
+https://github.com/cosmicrays/DRAGON
+https://github.com/HorvathLab/ReQTL
+https://github.com/cvjena/JeFaPaTo
+https://github.com/timstaley/voevent-parse
+https://github.com/deepmedic/deepmedic
+https://github.com/ajwheeler/Korg.jl
+https://github.com/icecube/FIRESONG
+https://github.com/ropensci/NLMR
+https://github.com/xfangcosmo/FFTLog-and-beyond
+https://github.com/mrc-ide/global-lmic-reports-orderly
+https://github.com/oliverphilcox/PolyBin
+https://github.com/ropensci/ezknitr
+https://github.com/torluca/morphofit
+https://github.com/seung-lab/FlyWirePaper
+https://github.com/rajeshmondal18/FoF-Halo-finder
+https://github.com/NLeSC/python-pcl
+https://github.com/yqiuu/starduster
+https://github.com/rx-li/EasyCellType
+https://github.com/thetisproject/thetis
+https://github.com/winni2k/abeona
+https://github.com/VeinsOfTheEarth/rabpro
+https://github.com/comprna/SUPPA
+https://github.com/Extraweich/homopy
+https://github.com/fforster/DELIGHT
+https://github.com/ekg/seqwish
+https://github.com/ulilautenschlager/crimp
+https://github.com/LMBooth/pybci
+https://github.com/ahudde/greeks
+https://github.com/hveerten/katu
+https://github.com/debian-tex/texlive-nonbin
+https://github.com/aikubo/LinkingLines
+https://github.com/tidymodels/stacks
+https://github.com/bcgsc/TMBur
+https://github.com/ropensci/c14bazAAR
+https://github.com/HUST-DataMan/FRMC
+https://github.com/Azeret/galIMF
+https://github.com/exoclime/VULCAN
+https://github.com/msailer1234/JWST_Simulation
+https://github.com/FRED-2/OptiType
+https://github.com/macrocosme/amber_meta
+https://github.com/najoshi/sickle
+https://github.com/newcleo-dev-team/lbh15
+https://github.com/ranieremenezes/easyFermi
+https://github.com/danielacarrasco/GLACiAR
+https://github.com/bcgov/bcdata
+https://github.com/coleygroup/pyscreener
+https://github.com/dondi/GRNsight
+https://github.com/NickMilsonPhysics/BinaryStarSolver
+https://github.com/jakobherpich/pyICs
+https://github.com/xmuyulab/DreamDIA-XMBD
+https://github.com/biswajitmb/DarpanX
+https://github.com/SMTG-UCL/surfaxe
+https://github.com/EoRImaging/FHD
+https://github.com/ropensci/osmapiR
+https://github.com/bwinkel/cygrid
+https://github.com/sylvainprigent/napari-tracks-reader
+https://github.com/genouest/biomaj-daemon
+https://github.com/msaland/THInCR-Suite
+https://github.com/MegaMorph/galapagos-c
+https://github.com/bradkav/runDM
+https://github.com/ConnorDonegan/geostan
+https://github.com/kboone/parsnip
+https://github.com/andresmegias/richvalues
+https://github.com/ACTCollaboration/zCluster
+https://github.com/MartianColonist/Cthulhu
+https://github.com/dylancromer/ostrich
+https://github.com/ckay314/OSPREI
+https://github.com/ropensci/chirps
+https://github.com/txopen/histoc
+https://github.com/julianreul/mode_behave
+https://github.com/thraraujo/pysymmpol
+https://github.com/NLESC-JCER/QMCTorch
+https://github.com/jorittmo/singcar
+https://github.com/ropensci/unrtf
+https://github.com/pavanvyn/triple-stability
+https://github.com/apcamargo/prodigal-gv
+https://github.com/PaulMcMillan-Astro/Torus
+https://github.com/zjupgx/modig
+https://github.com/LukeDuttweiler/skipTrack
+https://github.com/david-barnett/microViz
+https://github.com/BU-ISCIII/plasmidID
+https://github.com/bradkav/DMRadon
 https://github.com/Singh-Lab/uKIN
-https://github.com/basp-group/purify
-https://github.com/murphycj/AGFusion
-https://github.com/firedrakeproject/checkpoint_schedules
-https://github.com/pelahi/TreeFrog
-https://github.com/pynucastro/pynucastro
-https://github.com/the-rccg/hw2d
-https://github.com/lsds/Teechain
-https://github.com/mtazzari/binary
-https://github.com/richteague/disksurf
-https://github.com/GOVS-pack/GOVS
-https://github.com/fstrozzi/Fastool
-https://github.com/KennethEnevoldsen/augmenty
-https://github.com/egjergo/GalCEM
-https://github.com/walaj/svaba
-https://github.com/astrobrent/itera
-https://github.com/mp3guy/ElasticFusion
-https://github.com/BioComputingUP/ring-pymol
-https://github.com/bruce-chappell/SunnyNet
-https://github.com/esquivas/guacho
-https://github.com/mrc-ide/PlasmoMAPI
-https://github.com/ridgelab/ExtRampOnline
-https://github.com/ICRAR/daliuge
-https://github.com/cole-trapnell-lab/monocle3
-https://github.com/QibangLiu/PDLSM-FEM_mpi
-https://github.com/austinpeel/herculens
-https://github.com/pybamm-team/liionpack
-https://github.com/jw-lin/lightbeam
-https://github.com/jnktsj/DNApi
-https://github.com/moritzobenauer/ProjectRaccoon
-https://github.com/nlppln/nlppln
-https://github.com/niosh-mining/obsplus
-https://github.com/johncwok/CategoricalTimeSeries.jl
-https://github.com/alexriss/SpmImageTycoon.jl
-https://github.com/DeepRank/Deeprank-GNN
-https://github.com/vanheeringen-lab/gimmemotifs
-https://github.com/ImperialCollegeLondon/rcs-pacemakers
-https://github.com/UCBerkeleySETI/turbo_seti
-https://github.com/mzechmeister/serval
-https://github.com/EpistasisLab/regens
-https://github.com/pokynmr/iPick
-https://github.com/standage/AEGeAn
-https://github.com/Ruiz-HCI-Lab/ggMOB
-https://github.com/jls713/tact
-https://github.com/ycwu1030/EvoEMD
-https://github.com/winger/hawking_net
-https://github.com/cog-imperial/suspect
-https://github.com/lorenzo-rovigatti/oxDNA
-https://github.com/pynbody/genetIC
-https://github.com/bregaldo/pywst
-https://github.com/tessgi/tvguide
-https://github.com/insilicomedicine/GENTRL
+https://github.com/3D-e-Chem/tycho-knime-node-archetype
+https://github.com/gwpy/gwpy
+https://github.com/dhubber/seren
+https://github.com/yungkipreos/Min-CaLM
+https://github.com/yaml2sbml-dev/yaml2sbml
+https://github.com/marbl/Krona
+https://github.com/xcompact3d/Incompact3d
+https://github.com/jamesrhester/Lerche.jl
+https://github.com/tlverse/hal9001
+https://github.com/tesselle/aion
+https://github.com/duffell/RT1D
+https://github.com/OSU-BMBL/IDAM
+https://github.com/HannahMDoherty/ChemGAPP
+https://github.com/bayzidlab/SAINT-Angle
+https://github.com/CRPropa/CRPropa2
+https://github.com/nickelnine37/pykronecker
+https://github.com/ropensci/rdatacite
+https://github.com/ChenYangyao/hipp
+https://github.com/simon-prunet/defringe
+https://github.com/mrirecon/bart
+https://github.com/olivecha/guitarsounds
+https://github.com/spacetelescope/synphot_refactor
+https://github.com/constantAmateur/SoupX
+https://github.com/kevin218/Eureka
+https://github.com/labsyspharm/minerva-story
+https://github.com/raddleverse/MimiBRICK.jl
+https://github.com/connor-lab/vapor
+https://github.com/SWAT-Sheffield/SAC
 https://github.com/astrom-tom/dfitspy
-https://github.com/walaj/SeqLib
-https://github.com/SYalouz/QuantNBody
-https://github.com/FRED-2/OptiType
-https://github.com/muctadir/lama
-https://github.com/aakepley/autobox
-https://github.com/ColdThunder/NR-code
-https://github.com/thomasorb/orcs
+https://github.com/nikhilroxtomar/FANet
+https://github.com/OMBoersma/DeepGlow
+https://github.com/lh3/bgt
+https://github.com/pennucci/PulsePortraiture
+https://github.com/rvalieris/parallel-fastq-dump
+https://github.com/gerddie/maxflow
+https://github.com/cbottrell/realsim_ifs
+https://github.com/ropensci/spatsoc
+https://github.com/ropensci/treestartr
+https://github.com/openvax/mhcflurry
+https://github.com/aneeshnaik/spam
+https://github.com/richford/groupyr
+https://github.com/migp11/pyfastcore
+https://github.com/mjshao06/pdifFinder
+https://github.com/maserlib/ExPRES
+https://github.com/MIC-DKFZ/TractSeg
+https://github.com/dankelley/oce
+https://github.com/koide3/small_gicp
+https://github.com/telatin/bamtocov
+https://github.com/1313e/CMasher
+https://github.com/dwkim78/upsilon
+https://github.com/GunzIvan28/rMAP
+https://github.com/tobias-dv-lnu/s4rdm3x
+https://github.com/bwoshea/ZEUS-MP_2
+https://github.com/sncosmo/sncosmo
+https://github.com/flemingtonlab/SpliceV
+https://github.com/DOnghiaGroup/MGwave
+https://github.com/ropensci/crul
+https://github.com/cb-geo/mpm
+https://github.com/ropensci/vcr
+https://github.com/CosmoStat/pmclib
+https://github.com/xszhu-lab/AGImpute
+https://github.com/cadop/seg1d
+https://github.com/Starlink/aspic
+https://github.com/davidaknowles/leafcutter
+https://github.com/bow/crimson
+https://github.com/genomicepidemiology/ARGprofiler
+https://github.com/mihanke/athos
+https://github.com/ropensci/rplos
+https://github.com/jobovy/extreme-deconvolution
+https://github.com/henrikdvn/CRSocket
+https://github.com/liuhao-cn/fastSHT
+https://github.com/nworbde/dStar
+https://github.com/mtsch/Ripserer.jl
+https://github.com/YuLab-SMU/treeio
+https://github.com/me-manu/gammaALPs
+https://github.com/STEllAR-GROUP/hpx
+https://github.com/ropensci/neotoma
+https://github.com/CosmoStat/mccd
+https://github.com/bretthandrews/flexce
+https://github.com/PMBio/peer
+https://github.com/GoekeLab/xpore
+https://github.com/siara-cc/Unishox2
+https://github.com/singularityhub/singularity-compose
+https://github.com/osallou/cassiopee-c
+https://github.com/BIC-MNI/libminc
+https://github.com/ugovaretto/molekel
+https://github.com/slimgroup/InvertibleNetworks.jl
+https://github.com/opnavlab/sonic
+https://github.com/patkel/big-macs-calibrate
+https://github.com/rramadeu/AGHmatrix
+https://github.com/fruzsinaagocs/oscode
+https://github.com/algo-cancer/CAMMiQ
+https://github.com/bshoshany/OGRe
+https://github.com/DeepRegNet/DeepReg
+https://github.com/logan-pearce/lofti_gaia
+https://github.com/bcgsc/ntCard
+https://github.com/NLeSC/xtas
+https://github.com/henrikju/resolve
+https://github.com/danxhuber/evolstate
+https://github.com/mpound/comb
+https://github.com/Goobley/Radynversion
+https://github.com/tberlok/paicos
+https://github.com/duffell/Disco
+https://github.com/jianghuaijie/scLRTC
+https://github.com/ropensci/taxview
+https://github.com/tylunel/pvpumpingsystem
+https://github.com/kim554/wdec
+https://github.com/PeterDenton/ANA
 https://github.com/rrwick/Filtlong
-https://github.com/Pinlyu3/LRLoop
-https://github.com/ska-sa/hibayes
-https://github.com/ialopezt/GalLenspy
-https://github.com/yuansh3354/CaSee
-https://github.com/rzellem/EXOTIC
-https://github.com/uwsbel/low-fidelity-dynamic-models
-https://github.com/LBC-LNBio/parKVFinder-win
-https://github.com/artefactory/choice-learn
-https://github.com/ropensci/plater
-https://github.com/andycasey/sick
-https://github.com/nedtaylor/athena
-https://github.com/phylo42/EPIK
-https://github.com/ot483/NetCom
-https://github.com/telatin/qax
-https://github.com/ocean-eddy-cpt/gcm-filters
-https://github.com/ncbi/BAMscale
-https://github.com/marcelm/tinyalign
-https://github.com/ropensci/taxlist
-https://github.com/gpantel/MolPainter
-https://github.com/karllark/dust_extinction
-https://github.com/insightsengineering/rbmi
-https://github.com/bxlab/metaWRAP
-https://github.com/cylammarco/WDPhotTools
-https://github.com/lbcb-sci/raven
-https://github.com/rmjarvis/TreeCorr
-https://github.com/MrShoenel/metrics-as-scores
-https://github.com/abacusorg/zeldovich-PLT
-https://github.com/nickjcroucher/gubbins
-https://github.com/hope-data-science/tidyfst
-https://github.com/spacetelescope/stsdas_stripped
-https://github.com/dfm/corner.py
-https://github.com/danielacarrasco/GLACiAR
+https://github.com/light-curve/light-curve-python
+https://github.com/NKI-CCB/PRECISE
+https://github.com/jls713/tact
+https://github.com/ropensci/medrxivr
+https://github.com/lh3/seqtk
+https://github.com/cns-iu/HRA-supporting-information
+https://github.com/MIC-DKFZ/HD-BET
+https://github.com/herrsalmi/FConverter
+https://github.com/research-software-directory/research-software-directory
+https://github.com/twosixlabs/magicwand-datatool
+https://github.com/PDB-REDO/cif-tools
+https://github.com/lpantano/seqbuster
+https://github.com/rribeiro-sci/pygomodo
+https://github.com/gururajw/superlite
+https://github.com/yuhuan-wu/MobileSal
+https://github.com/NLeSC/case-law-app
+https://github.com/johnh2o2/cuvarbase
+https://github.com/damonge/CoLoRe
+https://github.com/PabloVD/CosmoGraphNet
+https://github.com/mgckind/easyaccess
+https://github.com/B-UMMI/chewBBACA
+https://github.com/medema-group/bigslice
+https://github.com/JeffLCoughlin/skye
+https://github.com/rvaser/sword
+https://github.com/saphir746/BiobankRead-Bash
+https://github.com/bradkav/verne
+https://github.com/ACEnglish/truvari
+https://github.com/zhoulinumass/ML-wPBE
+https://github.com/pynucastro/pynucastro
+https://github.com/ropensci/stplanr
+https://github.com/joergbuchwald/joss_ogs6py_VTUinterface
+https://github.com/bwvdnbro/HydroCode1D
+https://github.com/OrchardLANL/DPFEHM.jl
+https://github.com/cog-imperial/suspect
+https://github.com/JuliaAI/Imbalance.jl
+https://github.com/ewanbarr/peasoup
+https://github.com/DistrictDataLabs/yellowbrick
+https://github.com/jpahlers/LASR
+https://github.com/takfung/ResDisMapper
+https://github.com/captain-exoplanet/misttborn
+https://github.com/ropensci/circle
+https://github.com/etiennepayet/nti
+https://github.com/fred3m/toyz
+https://github.com/giswqs/lidar
+https://github.com/COMBINE-lab/cuttlefish
+https://github.com/manodeep/Corrfunc
+https://github.com/Washington-University/CiftiLib
+https://github.com/babinyurii/recan
+https://github.com/statgen/popscle
+https://github.com/ByrumLab/proteoDA
+https://github.com/MilesCranmer/PySR
+https://github.com/harrispopgen/mutyper
+https://github.com/ropensci/GSODR
+https://github.com/intelligent-soft-robots/o80
 https://github.com/chakrah/sage
-https://github.com/MIC-DKFZ/TractSeg
-https://github.com/ImperialCollegeLondon/fractalgenetics
-https://github.com/SERVIR/servir-aces
-https://github.com/ixkael/3DEX
-https://github.com/ModellingWebLab/chaste-codegen
-https://github.com/damonge/schNell
-https://github.com/macrocosme/time_domain_astronomy_sandbox
+https://github.com/robashaw/libecpint
+https://github.com/j-faria/kima
+https://github.com/LucaMalavolta/CCFpams
+https://github.com/cloudflex-project/cloudflex
+https://github.com/guillochon/MOSFiT
+https://github.com/TeamLEGWORK/LEGWORK
+https://github.com/wonderful1/CNV-PG
+https://github.com/JohannesBuchner/BXA
+https://github.com/bbercovici/SBGAT
+https://github.com/nell-byler/cloudyfsps
+https://github.com/a-slide/pycoQC
+https://github.com/ropensci/europepmc
+https://github.com/flintproject/Flint
+https://github.com/CHES2023/PyMsOfa
+https://github.com/pynbody/pynbody
+https://github.com/ropensci/trufflesniffer
+https://github.com/MikeSWang/HorizonGRound
+https://github.com/davidkipping/inversebeta
+https://github.com/basp-group/SARA-PPD
+https://github.com/VanLoo-lab/ascat
+https://github.com/nedtaylor/athena
+https://github.com/amanchokshi/EMBERS
+https://github.com/ZhenjiangFan/DAG-deepVASE
+https://github.com/JuliaMatrices/LazyBandedMatrices.jl
+https://github.com/range-et/PGL
+https://github.com/ihmwg/python-modelcif
+https://github.com/nsoranzo/sspace_basic
+https://github.com/schochastics/graphlayouts
+https://github.com/ropensci/onekp
+https://github.com/liulei/volks2
+https://github.com/ropensci/RefManageR
+https://github.com/citation-file-format/cffconvert-github-action
+https://github.com/tne-lab/py-behav-box-v2
+https://github.com/PathwayCommons/grounding-search
+https://github.com/ylab-hi/ScanExitronLR
+https://github.com/asgr/ProSpect
+https://github.com/andr1976/HydDown
+https://github.com/HadrienG/InSilicoSeq
+https://github.com/dnafinder/uroccomp
+https://github.com/indraniel/fqgrep
+https://github.com/spacetelescope/jdaviz
+https://github.com/BradGreig/21CMMC
+https://github.com/vhaasteren/piccard
+https://github.com/biocore/unifrac
+https://github.com/AdrianA-T/cytomorph
+https://github.com/benyhh/ml-telescope-pointing-correction
+https://github.com/JGCRI/ambrosia
+https://github.com/jczarnowski/DeepFactors
+https://github.com/SESMG/SESMG
+https://github.com/SDTC-CPMed/scDrugPrio
+https://github.com/tylertrimble/viswaternet
+https://github.com/tomasplsek/CADET
+https://github.com/walaj/svaba
+https://github.com/ropensci/bib2df
+https://github.com/ropensci/baRcodeR
+https://github.com/pkestene/ramsesGPU
+https://github.com/getzlab/rnaseqc
+https://github.com/secastel/phaser
+https://github.com/tanner-trickle/EXCEED-DM
+https://github.com/justyncw/STAR_MELT
+https://github.com/reality/klarigi
+https://github.com/oliverphilcox/encore
+https://github.com/remi-adam/minot
+https://github.com/nkhorshid/SimAb
+https://github.com/pyBRAvo/pyBRAvo
+https://github.com/ProSolo/prosolo
+https://github.com/radio-astro-tools/uvcombine
+https://github.com/CMU-SAFARI/BLEND
+https://github.com/darrencroton/sage
+https://github.com/martinjameswhite/ZeldovichRecon
+https://github.com/murphycj/AGFusion
+https://github.com/mtazzari/uvplot
+https://github.com/monarch-initiative/loinc2hpo
+https://github.com/radiocosmology/driftscan
+https://github.com/thegenemyers/DEXTRACTOR
+https://github.com/exoplanet-dev/celerite2
+https://github.com/AgrDataSci/climatrends
 https://github.com/PolyChord/PolyChordLite
-https://github.com/marziarivi/RadioLensfit2
-https://github.com/LSSTDESC/sacc
-https://github.com/ropensci/neotoma
-https://github.com/NielsenBerkeleyLab/sconce
-https://github.com/dfm/photodynam
-https://github.com/lab-medvedeva/GADES-main
-https://github.com/JLSteenwyk/ggpubfigs
-https://github.com/ctSkennerton/minced
-https://github.com/mindearth/mobilkit
-https://github.com/vergauwenthomas/MetObs_toolkit
-https://github.com/ropensci/writexl
-https://github.com/egonw/bacting
-https://github.com/WMD-group/StarryNight
-https://github.com/PanKonstantinos/MEvA-X
-https://github.com/ezquiaga/phazap
-https://github.com/arq5x/bedtools2
-https://github.com/yiling0210/APIR
-https://github.com/cabb99/open3spn2
-https://github.com/nlesc-nano/ceiba-cli
-https://github.com/BPSB/combine-p-values-discrete
-https://github.com/hyosubkim/bayes-toolbox
-https://github.com/PrincetonUniversity/FastTemplatePeriodogram
-https://github.com/cog-imperial/GPdoemd
-https://github.com/mrirecon/view
-https://github.com/max-little/GRAPL
-https://github.com/fcastagna/JoXSZ
-https://github.com/musevlt/origin
-https://github.com/fatmasevinck/enetLTS
-https://github.com/ropensci/rromeo
-https://github.com/minzastro/unidam
-https://github.com/hildebra/LCA
-https://github.com/NIFTy-PPL/JAXbind
-https://github.com/soerenslarsen/ISPy3
-https://github.com/brentp/mosdepth
-https://github.com/yuliadm/mixComp
-https://github.com/hdeeg/KvW
-https://github.com/blind-contours/CVtreeMLE
-https://github.com/ADThomas-astro/oxaf
-https://github.com/ropensci/rusda
-https://github.com/julia-wrobel/registr
-https://github.com/shinichiroando/sashimi-c
-https://github.com/henry2004y/Vlasiator.jl
-https://github.com/nickk124/RCR
-https://github.com/QZH2022/germline_flow
-https://github.com/Starlink/starjava
-https://github.com/witseie/fpgaperm
-https://github.com/mlhutchins/LWPC
-https://github.com/CTU-Bern/presize
-https://github.com/DamynChipman/EllipticForest
-https://github.com/3D-e-Chem/knime-sstea
-https://github.com/dfm/celerite
-https://github.com/Taywee/args
-https://github.com/ekg/seqwish
-https://github.com/COMBINE-lab/alevin-fry
-https://github.com/Li-Yangyang/LOTUS
-https://github.com/megbedell/wobble
-https://github.com/luntergroup/octopus
-https://github.com/CosmoStat/shapepipe
-https://github.com/COMBINE-lab/salmon
-https://github.com/mariogrs/Simfast21
-https://github.com/fzagaria/COpops
-https://github.com/AMReX-Astro/wdmerger
-https://github.com/mzechmeister/viper
-https://github.com/ropensci/rAltmetric
+https://github.com/C3BI-pasteur-fr/toppred
+https://github.com/xstarkit/MPI_XSTAR
+https://github.com/phirling/pyc2ray
+https://github.com/ptriska/WavesDash
+https://github.com/Dylan-Aliberti/Kepler-Collisions
+https://github.com/dgrun/FateID
+https://github.com/CederGroupHub/sparse-lm
+https://github.com/matiscke/lcps
+https://github.com/CarlosCoba/XookSuut-code
+https://github.com/guangtunbenzhu/SetCoverPy
+https://github.com/lwang-astro/PeTar
+https://github.com/benjaminbolling/DynaGUI
+https://github.com/E3SM-Project/gdess
+https://github.com/user29A/fastrometry
+https://github.com/Toloka/crowd-kit
+https://github.com/aranyics/ReDCM
+https://github.com/nick-youngblut/gtdb_to_taxdump
+https://github.com/Computational-NeuroGenetics/deMeta-beta
+https://github.com/manodeep/TesseRACt
+https://github.com/Pithikos/C-Thread-Pool
+https://github.com/bbye98/mdcraft
+https://github.com/aconley/simple_cosfitter
+https://github.com/JulienPeloton/s4cmb
+https://github.com/dsheward-astro/PyNAPLE
+https://github.com/tloredo/CUDAHM
+https://github.com/Smith42/XDF-GAN
+https://github.com/astropy/astroplan
+https://github.com/smirarab/pasta
+https://github.com/NLeSC/structure-from-motion
+https://github.com/exoml/plan-net
+https://github.com/cbalbin-bio/Epitopedia
+https://github.com/cy-xu/cosmic-conn
+https://github.com/htjb/maxsmooth
+https://github.com/humanfactors/FIPS
+https://github.com/freemed/freeshim
+https://github.com/enveda/RPath
+https://github.com/antoinemarchal/ROHSA
+https://github.com/GregoryFaust/yaha
+https://github.com/pudu-py/pudu
+https://github.com/wdecoster/nano-snakemake
+https://github.com/DrJCarson/BoundedCoalescent
+https://github.com/mehdirezaie/SYSNet
+https://github.com/asgr/ProFound
+https://github.com/davek44/Glimmer-MG
+https://github.com/Battery-Intelligence-Lab/dtw-cpp
+https://github.com/bioturing/hera
+https://github.com/niosh-mining/obsplus
+https://github.com/martenlourens/pySDR
+https://github.com/NLeSC/MAGMa
+https://github.com/nkallima/sim-universal-construction
+https://github.com/mikekatz04/BOWIE
+https://github.com/dipangwvu/SPEGID
+https://github.com/stammler/dustpy
+https://github.com/ELELAB/cancermuts
+https://github.com/ropensci/rdflib
+https://github.com/shenwei356/unikmer
+https://github.com/tomlouden/SPIDERMAN
+https://github.com/agsreejith/CONTROL
+https://github.com/ropensci/coder
+https://github.com/amusecode/amuse
+https://github.com/timchurches/NetEpi-Collection
+https://github.com/wdecoster/nanolyse
+https://github.com/vpc-ccg/genion
+https://github.com/andresGranadosC/GalRotpy
+https://github.com/NLeSC/ShiCo
+https://github.com/3D-e-Chem/knime-python-wrapper
+https://github.com/jveitchmichaelis/pygadgetreader
+https://github.com/astro-informatics/s2let
+https://github.com/revoltek/losoto
+https://github.com/singularityhub/singularity-hpc
+https://github.com/sibirrer/hierArc
+https://github.com/nhejazi/medoutcon
+https://github.com/mgcooper/baseflow
 https://github.com/nyusngroup/pyMCZ
-https://github.com/d-tear/SIAL
-https://github.com/portsmouth/cmbview
-https://github.com/seqan/lara
-https://github.com/DTsuna/binary_precursor
-https://github.com/1313e/PRISM
-https://github.com/ArgonneCPAC/dsps
-https://github.com/pepamengual/UEP
-https://github.com/EGaraldi/ZInCo
-https://github.com/xszhu-lab/AGImpute
-https://github.com/ggmichael/craterstats
-https://github.com/jhkorhonen/MOODS
-https://github.com/pepkit/geofetch
-https://github.com/damonge/CoLoRe
-https://github.com/akleroy/phangs_imaging_scripts
-https://github.com/ropensci/GSODR
-https://github.com/YihePang/DisoFLAG
-https://github.com/ropensci/ecoengine
-https://github.com/SMTG-UCL/surfaxe
-https://github.com/perfanalytics/pose2sim
-https://github.com/sevenstarknight/VariableStarAnalysis
-https://github.com/nasa/simupy-flight
-https://github.com/DGtal-team/DGtal
-https://github.com/achaikova/frbmclust
-https://github.com/Social-Evolution-and-Behavior/anTraX
-https://github.com/vsulis5357/Sonification
\ No newline at end of file
+https://github.com/TPI-Immunogenetics/igmat
+https://github.com/YonghuiDong/RawHummus
+https://github.com/gbernstein/gbdes
+https://github.com/ViennaRNA/RNAblueprint
\ No newline at end of file
diff --git a/.github/repos.txt b/.github/repos.txt
index 3b59faa4..b416d19a 100644
--- a/.github/repos.txt
+++ b/.github/repos.txt
@@ -1,316 +1,316 @@
-https://github.com/ranocha/SummationByPartsOperators.jl
-https://github.com/JuliaDynamics/TimeseriesSurrogates.jl
-https://github.com/snad-space/ztf-viewer
-https://github.com/chocoteam/choco-solver
-https://github.com/DataBiosphere/toil
-https://github.com/ropenscilabs/gendercoder
-https://github.com/furrer-lab/abn
-https://github.com/AngryMaciek/hypercomplex
-https://github.com/pandas-dev/pandas
-https://github.com/jameschapman19/cca_zoo
-https://github.com/lzkelley/kalepy
-https://github.com/hpc-social/surveys
-https://github.com/vaexio/vaex
-https://github.com/siavash-saki/tesspy
-https://github.com/MintonGroup/swiftest
-https://github.com/PyTorchLightning/metrics
-https://github.com/DeepRank/deeprank
-https://github.com/fury-gl/fury
-https://github.com/TrackerControl/tracker-control-android
-https://github.com/jonschwenk/RivGraph
-https://github.com/StingraySoftware/stingray
-https://github.com/hpc-maths/samurai
 https://github.com/qutip/qutip
-https://github.com/mzy2240/ESA
-https://github.com/einsteinpy/einsteinpy
-https://github.com/radis/radis
-https://github.com/thomaspinder/GPJax
-https://github.com/HofstadterTools/HofstadterTools
-https://github.com/SatelliteShorelines/CoastSeg
-https://github.com/TeamCOMPAS/COMPAS
-https://github.com/smith-chem-wisc/MetaMorpheus
-https://github.com/gvilitechltd/LibSWIFFT
-https://github.com/ml-evs/matador
-https://github.com/tardis-sn/carsus
-https://github.com/dfki-ric/movement_primitives
-https://github.com/pysal/spaghetti
-https://github.com/simonsobs/pixell
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-https://github.com/shankarpandala/lazypredict
-https://github.com/dicompyler/dicompyler-core
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-https://github.com/cholla-hydro/cholla
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-https://github.com/conda-forge/conda-smithy
-https://github.com/blackjax-devs/blackjax
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-https://github.com/cgre-aachen/gemgis
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-https://github.com/jupyter/notebook
-https://github.com/glotzerlab/hoomd-blue
-https://github.com/stillwater-sc/universal
+https://github.com/lumen-org/lumen
+https://github.com/KarrLab/de_sim
+https://github.com/DeepRank/deeprank
+https://github.com/buildtesters/buildtest
+https://github.com/PyTorchLightning/metrics
+https://github.com/euroargodev/argopy
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+https://github.com/PrincetonUniversity/athena
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-https://github.com/catboost/catboost
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-https://github.com/JPenuchot/ctbench
-https://github.com/healpy/healpy
-https://github.com/riogroup/SORA
-https://github.com/llrs/experDesign
+https://github.com/scikit-learn/scikit-learn
+https://github.com/maps-as-data/MapReader
+https://github.com/opencobra/cobrapy
+https://github.com/bcgsc/btllib
 https://github.com/icesat2py/icepyx
-https://github.com/automl/amltk
+https://github.com/feature-engine/feature_engine
+https://github.com/cgre-aachen/gemgis
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-https://github.com/dsavransky/EXOSIMS
-https://github.com/SciML/DataInterpolations.jl
-https://github.com/tbrown122387/pf
-https://github.com/tardis-sn/tardis
-https://github.com/idaholab/moose
-https://github.com/Cascella-Group-UiO/HyMD
-https://github.com/hpc-social/map
-https://github.com/zdelrosario/py_grama
-https://github.com/open2c/cooler
-https://github.com/LondonBiofoundry/basicsynbio
-https://github.com/xgi-org/xgi
-https://github.com/SMI/SmiServices
-https://github.com/scipy/scipy
-https://github.com/ropensci/jstor
-https://github.com/parthenon-hpc-lab/parthenon
-https://github.com/JuliaManifolds/Manopt.jl
-https://github.com/jupyterlab/jupyterlab
-https://github.com/ekaterinailin/AltaiPony
-https://github.com/maps-as-data/MapReader
-https://github.com/firedrakeproject/firedrake
-https://github.com/privong/pymccorrelation
-https://github.com/bluesky/bluesky
-https://github.com/statdivlab/rigr
-https://github.com/datalad/datalad
-https://github.com/CLIMADA-project/climada_python
-https://github.com/google/jax
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-https://github.com/Martinsos/edlib
-https://github.com/smithlabcode/falco
-https://github.com/multiscale/muscle3
-https://github.com/biopython/biopython
-https://github.com/tjiangHIT/cuteSV
-https://github.com/scverse/scanpy
+https://github.com/tardis-sn/carsus
+https://github.com/NeuralEnsemble/PyNN
+https://github.com/pyomeca/biorbd
+https://github.com/cupy/cupy
+https://github.com/cholla-hydro/cholla
+https://github.com/pysal/spaghetti
+https://github.com/fAndreuzzi/BisPy
+https://github.com/MolMeDB/MolMeDB
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-https://github.com/reizio/reiz.io
-https://github.com/JulianKarlBauer/mechkit
-https://github.com/networkx/networkx
-https://github.com/Autostronomy/AstroPhot
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-https://github.com/lmcinnes/umap
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-https://github.com/mackelab/sbi
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-https://github.com/joglekara/VlaPy
-https://github.com/undark-lab/swyft
-https://github.com/sblunt/orbitize
+https://github.com/DeltaRCM/pyDeltaRCM
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+https://github.com/JulianKarlBauer/mechkit
+https://github.com/thorstone25/qups
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-https://github.com/frank1010111/pywaterflood
-https://github.com/NeuralEnsemble/PyNN
-https://github.com/sanctuuary/APE
+https://github.com/panoptes/POCS
+https://github.com/dicompyler/dicompyler-core
+https://github.com/nanoporetech/megalodon
+https://github.com/SISPO-developers/sispo
+https://github.com/Materials-Consortia/optimade-python-tools
+https://github.com/tardis-sn/tardis
+https://github.com/nextstrain/nextclade
+https://github.com/hpc-maths/samurai
+https://github.com/jacksund/simmate
+https://github.com/qpv-research-group/solcore5
+https://github.com/ropensci/BaseSet
+https://github.com/numba/numba
+https://github.com/DavidT3/XGA
+https://github.com/snad-space/ztf-viewer
+https://github.com/SCIInstitute/UncertainSCI
+https://github.com/dpalmasan/TRUNAJOD2.0
+https://github.com/Pometry/Raphtory
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-https://github.com/ipython/ipython
-https://github.com/delve-team/delve
+https://github.com/clawpack/pyclaw
+https://github.com/ropensci/tidyqpcr
+https://github.com/MintonGroup/swiftest
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-https://github.com/snek5000/snek5000
-https://github.com/pvlib/pvlib-python
-https://github.com/SDXorg/pysd
-https://github.com/nu-radio/NuRadioMC
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-https://github.com/mirapy-org/mirapy
-https://github.com/KarrLab/de_sim
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-https://github.com/arjunsavel/SImMER
-https://github.com/nci/scores
-https://github.com/Jashcraf/poke
-https://github.com/williamjameshandley/anesthetic
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-https://github.com/SietzeN/glottospace
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-https://github.com/snowformatics/macrobot
-https://github.com/lanl/PyBNF
-https://github.com/ConnorStoneAstro/AutoProf
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-https://github.com/AstarVienna/irdb
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-https://github.com/tumcms/Open-Infra-Platform
-https://github.com/pymedphys/pymedphys
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-https://github.com/MLMI2-CSSI/foundry
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+https://github.com/adbar/htmldate
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+https://github.com/NathanSkene/EWCE
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-https://github.com/pytorch/vision
-https://github.com/hpc-social/events
-https://github.com/atomec-project/atoMEC
-https://github.com/AstarVienna/ScopeSim_Templates
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-https://github.com/lanl/spiner
-https://github.com/dask/dask
-https://github.com/statsmodels/statsmodels
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-https://github.com/scikit-learn/scikit-learn
-https://github.com/buildtesters/buildtest
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-https://github.com/DavidT3/XGA
-https://github.com/firefly-cpp/NiaARM
-https://github.com/kblin/ncbi-acc-download
+https://github.com/syasini/AstroPaint
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-https://github.com/arup-group/pam
-https://github.com/lucydot/effmass
-https://github.com/tensorflow/tensorflow
-https://github.com/robbievanleeuwen/section-properties
-https://github.com/sjvrijn/mf2
-https://github.com/mlpack/mlpack
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-https://github.com/TORCH-Consortium/MAGMA
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-https://github.com/jump-dev/JuMP.jl
-https://github.com/MolMeDB/MolMeDB
-https://github.com/adbar/htmldate
-https://github.com/dr-joe-wirth/primerForge
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+https://github.com/ECSHackWeek/impedance.py
+https://github.com/DataBiosphere/toil
+https://github.com/CAMI-challenge/CAMITAX
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-https://github.com/PennyLaneAI/catalyst
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-https://github.com/DeltaRCM/pyDeltaRCM
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 https://github.com/sourmash-bio/sourmash
-https://github.com/ivadomed/ivadomed
-https://github.com/simd-everywhere/simde
-https://github.com/InsightSoftwareConsortium/ITK
+https://github.com/JuliaDynamics/TimeseriesSurrogates.jl
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+https://github.com/cea-hpc/modules
+https://github.com/SatelliteShorelines/CoastSeg
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-https://github.com/UNSW-CEEM/NEMSEER
-https://github.com/nextstrain/nextclade
-https://github.com/extendr/extendr
-https://github.com/ropensci/BaseSet
-https://github.com/ropensci/tidyqpcr
+https://github.com/Autostronomy/AstroPhot
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+https://github.com/chocoteam/choco-solver
+https://github.com/biaslab/RxInfer.jl
 https://github.com/duetosymmetry/qnm
+https://github.com/graphnet-team/graphnet
+https://github.com/hpc-social/map
+https://github.com/lrnv/Copulas.jl
+https://github.com/glotzerlab/hoomd-blue
+https://github.com/flyaflya/causact
+https://github.com/dr-joe-wirth/primerForge
+https://github.com/idaholab/moose
+https://github.com/AMReX-Astro/Castro
+https://github.com/IMMM-SFA/mosartwmpy
+https://github.com/HDFGroup/hdf5
+https://github.com/scverse/scvi-tools
+https://github.com/nu-radio/NuRadioMC
+https://github.com/MrMinimal64/multivar_horner
+https://github.com/hpc-social/surveys
+https://github.com/mosdef-hub/mbuild
+https://github.com/nci/scores
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+https://github.com/tensorflow/tensorflow
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+https://github.com/simonsobs/pixell
+https://github.com/CIRADA-Tools/RM-Tools
+https://github.com/TORCH-Consortium/MAGMA
+https://github.com/LiberTEM/LiberTEM
+https://github.com/Robaina/Pynteny
+https://github.com/snowformatics/macrobot
+https://github.com/extendr/extendr
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+https://github.com/shankarpandala/lazypredict
+https://github.com/3fon3fonov/exostriker
+https://github.com/open2c/cooler
+https://github.com/AstarVienna/ScopeSim_Templates
+https://github.com/thomaspinder/GPJax
+https://github.com/TrackerControl/tracker-control-android
+https://github.com/glotzerlab/freud
+https://github.com/tjiangHIT/cuteSV
+https://github.com/lcpp-org/RustBCA
+https://github.com/cython/cython
+https://github.com/frank1010111/pywaterflood
+https://github.com/mzy2240/ESA
+https://github.com/tbrown122387/pf
+https://github.com/netsiphd/netrd
+https://github.com/plotly/dash
+https://github.com/xgi-org/xgi
+https://github.com/cmelab/flowerMD
+https://github.com/lzkelley/kalepy
+https://github.com/palaimon/ipyannotator
+https://github.com/lanl/PyBNF
+https://github.com/Merck/BioPhi
+https://github.com/skypyproject/skypy
+https://github.com/scipy/scipy
+https://github.com/vaexio/vaex
+https://github.com/google/jax
+https://github.com/ElectionDataAnalysis/electiondata
+https://github.com/su2code/SU2
+https://github.com/GeminiDRSoftware/DRAGONS
 https://github.com/freqtrade/freqtrade
-https://github.com/SCIInstitute/UncertainSCI
 https://github.com/mathLab/PINA
+https://github.com/lanl/spiner
+https://github.com/Cascella-Group-UiO/HyMD
+https://github.com/furrer-lab/abn
+https://github.com/optuna/optuna
+https://github.com/pmkruyen/dearscholar
+https://github.com/DLTK/DLTK
+https://github.com/fitbenchmarking/fitbenchmarking
+https://github.com/nuclear-multimessenger-astronomy/nmma
+https://github.com/samirmartins/pydaq
+https://github.com/JuliaHEP/UnROOT.jl
+https://github.com/statdivlab/rigr
+https://github.com/parmoo/parmoo
+https://github.com/mad-lab-fau/tpcp
+https://github.com/jameschapman19/cca_zoo
+https://github.com/delve-team/delve
+https://github.com/ipython/ipython
+https://github.com/ropensci/rinat
+https://github.com/cogent3/cogent3
+https://github.com/CLARIAH/grlc
+https://github.com/privong/pymccorrelation
+https://github.com/gnudatalanguage/gdl
+https://github.com/radis/radis
+https://github.com/vatlab/sos-notebook
+https://github.com/jupyterlab/jupyterlab
+https://github.com/kanaverse/kana
+https://github.com/scverse/scanpy
+https://github.com/NathanSandford/Chem-I-Calc
+https://github.com/LondonBiofoundry/basicsynbio
+https://github.com/TeamCOMPAS/COMPAS
+https://github.com/JuliaPlots/Makie.jl
+https://github.com/arup-group/pam
 https://github.com/sunpy/sunpy
-https://github.com/biaslab/RxInfer.jl
-https://github.com/HDFGroup/hdf5
-https://github.com/IMMM-SFA/mosartwmpy
-https://github.com/Pometry/Raphtory
-https://github.com/PetroFit/petrofit
+https://github.com/gridap/Gridap.jl
 https://github.com/mortonne/psifr
-https://github.com/PrincetonUniversity/athena
-https://github.com/jobovy/galpy
-https://github.com/mad-lab-fau/tpcp
-https://github.com/traja-team/traja
-https://github.com/netsiphd/netrd
-https://github.com/xoopR/set6
-https://github.com/AMReX-Astro/Castro
-https://github.com/mdtanker/polartoolkit
-https://github.com/parafields/parafields
-https://github.com/CQCL/qujax
-https://github.com/cmelab/flowerMD
+https://github.com/lucydot/effmass
+https://github.com/nextstrain/auspice
+https://github.com/hoechenberger/questplus
+https://github.com/ropensci/jstor
+https://github.com/mirapy-org/mirapy
+https://github.com/Qiskit/qiskit-experiments
+https://github.com/gvilitechltd/LibSWIFFT
+https://github.com/sanctuuary/APE
 https://github.com/ReSurfEMG/ReSurfEMG
-https://github.com/lumen-org/lumen
-https://github.com/3fon3fonov/exostriker
-https://github.com/stan-dev/stan
-https://github.com/clawpack/pyclaw
-https://github.com/DataverseLabs/pyinterpolate
-https://github.com/mosdef-hub/mbuild
-https://github.com/CIRADA-Tools/RM-Tools
+https://github.com/CQCL/qujax
 https://github.com/JuliaLang/julia
-https://github.com/numba/numba
-https://github.com/ECP-WarpX/WarpX
-https://github.com/Qiskit/rustworkx
+https://github.com/ropensci/dataspice
+https://github.com/reizio/reiz.io
+https://github.com/pyro-ppl/pyro
+https://github.com/zdelrosario/py_grama
+https://github.com/pymedphys/pymedphys
+https://github.com/Martinsos/edlib
+https://github.com/jonschwenk/RivGraph
+https://github.com/tumcms/Open-Infra-Platform
+https://github.com/HofstadterTools/HofstadterTools
+https://github.com/arjunsavel/SImMER
+https://github.com/stan-dev/stan
+https://github.com/scikit-hep/pyhf
+https://github.com/firefly-cpp/NiaARM
+https://github.com/lazear/sage
+https://github.com/ropenscilabs/gendercoder
+https://github.com/healpy/healpy
+https://github.com/ml-evs/matador
+https://github.com/robbievanleeuwen/section-properties
+https://github.com/parthenon-hpc-lab/parthenon
+https://github.com/scikit-hep/iminuit
+https://github.com/einsteinpy/einsteinpy
 https://github.com/ropensci/osmextract
-https://github.com/su2code/SU2
-https://github.com/Merck/BioPhi
\ No newline at end of file
+https://github.com/pandas-dev/pandas
+https://github.com/astropy/astropy
\ No newline at end of file
diff --git a/docs/_issues/2017-12-15-sxs-collaboration-spectre-462.md b/docs/_issues/2017-12-15-sxs-collaboration-spectre-462.md
deleted file mode 100644
index 200c0b58..00000000
--- a/docs/_issues/2017-12-15-sxs-collaboration-spectre-462.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["enhancement","help-wanted"]
-title: "Argument types for MathFunctions"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/462"
-user: "nilsdeppe"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2018-06-19-sxs-collaboration-spectre-769.md b/docs/_issues/2018-06-19-sxs-collaboration-spectre-769.md
deleted file mode 100644
index eb9163a5..00000000
--- a/docs/_issues/2018-06-19-sxs-collaboration-spectre-769.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["enhancement"]
-title: "Test on grids with Gauss points"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/769"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2018-09-16-sxs-collaboration-spectre-947.md b/docs/_issues/2018-09-16-sxs-collaboration-spectre-947.md
deleted file mode 100644
index 6c51ec49..00000000
--- a/docs/_issues/2018-09-16-sxs-collaboration-spectre-947.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["enhancement"]
-title: "Use MakeString to instead of stringstream where possible"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/947"
-user: "nilsdeppe"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2018-11-27-sxs-collaboration-spectre-1200.md b/docs/_issues/2018-11-27-sxs-collaboration-spectre-1200.md
deleted file mode 100644
index d39b91d8..00000000
--- a/docs/_issues/2018-11-27-sxs-collaboration-spectre-1200.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["enhancement"]
-title: "Use Coordinates tag to get rid of template parameters in Domain tags"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/1200"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2019-01-30-sxs-collaboration-spectre-1303.md b/docs/_issues/2019-01-30-sxs-collaboration-spectre-1303.md
deleted file mode 100644
index 07c8ce38..00000000
--- a/docs/_issues/2019-01-30-sxs-collaboration-spectre-1303.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["enhancement"]
-title: "Move constexpr math functions"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/1303"
-user: "nilsdeppe"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2019-07-17-pandas-dev-pandas-27437.md b/docs/_issues/2019-07-17-pandas-dev-pandas-27437.md
deleted file mode 100644
index 5b9e6695..00000000
--- a/docs/_issues/2019-07-17-pandas-dev-pandas-27437.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["Indexing","Needs-Tests","alignment","data-analysis","data-science","flexible","pandas","python"]
-title: "Indexing on series where index is output from pd.cut "
-html_url: "https://github.com/pandas-dev/pandas/issues/27437"
-user: "kuchenrolle"
-repo: "pandas-dev/pandas"
----
-
diff --git a/docs/_issues/2019-12-26-jupyterlab-jupyterlab-7702.md b/docs/_issues/2019-12-26-jupyterlab-jupyterlab-7702.md
new file mode 100644
index 00000000..9939f3e5
--- /dev/null
+++ b/docs/_issues/2019-12-26-jupyterlab-jupyterlab-7702.md
@@ -0,0 +1,8 @@
+---
+tags: ["enhancement","jupyter","jupyterlab","pkgshortcuts","tagKeyboard"]
+title: "multi-key shortcuts with different modifiers in each don't work"
+html_url: "https://github.com/jupyterlab/jupyterlab/issues/7702"
+user: "amosbird"
+repo: "jupyterlab/jupyterlab"
+---
+
diff --git a/docs/_issues/2020-02-10-icesat2py-icepyx-15.md b/docs/_issues/2020-02-10-icesat2py-icepyx-15.md
index cb704b29..8953bc32 100644
--- a/docs/_issues/2020-02-10-icesat2py-icepyx-15.md
+++ b/docs/_issues/2020-02-10-icesat2py-icepyx-15.md
@@ -1,6 +1,6 @@
 ---
 tags: ["closember","community-driven","enhancement","hacktoberfest","icesat-2","python3"]
-title: "interacting with the file system"
+title: "interacting with the file system using pathlib instead of os.path"
 html_url: "https://github.com/icesat2py/icepyx/issues/15"
 user: "JessicaS11"
 repo: "icesat2py/icepyx"
diff --git a/docs/_issues/2020-11-11-matplotlib-matplotlib-18931.md b/docs/_issues/2020-11-11-matplotlib-matplotlib-18931.md
new file mode 100644
index 00000000..0982f7b5
--- /dev/null
+++ b/docs/_issues/2020-11-11-matplotlib-matplotlib-18931.md
@@ -0,0 +1,8 @@
+---
+tags: ["Difficulty-Medium","Good-first-issue","data-science","data-visualization","gtk","matplotlib","plotting","python","qt","tk","topic-mplot3d","wx"]
+title: "3D collections do not proper handle `edgecolor='face'`"
+html_url: "https://github.com/matplotlib/matplotlib/issues/18931"
+user: "tacaswell"
+repo: "matplotlib/matplotlib"
+---
+
diff --git a/docs/_issues/2020-12-14-sxs-collaboration-spectre-2652.md b/docs/_issues/2020-12-14-sxs-collaboration-spectre-2652.md
deleted file mode 100644
index 892f5438..00000000
--- a/docs/_issues/2020-12-14-sxs-collaboration-spectre-2652.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["enhancement"]
-title: "Validate extents when creating a Mesh"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/2652"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2020-12-21-sxs-collaboration-spectre-2697.md b/docs/_issues/2020-12-21-sxs-collaboration-spectre-2697.md
deleted file mode 100644
index 8fdce6bf..00000000
--- a/docs/_issues/2020-12-21-sxs-collaboration-spectre-2697.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["documentation"]
-title: "Fix documentation of abort"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/2697"
-user: "wthrowe"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2021-02-10-sxs-collaboration-spectre-2871.md b/docs/_issues/2021-02-10-sxs-collaboration-spectre-2871.md
deleted file mode 100644
index 73f93586..00000000
--- a/docs/_issues/2021-02-10-sxs-collaboration-spectre-2871.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["enhancement"]
-title: "Add boundary conditions for different sides in Brick and Rectangle"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/2871"
-user: "nilsdeppe"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2021-03-01-sxs-collaboration-spectre-2934.md b/docs/_issues/2021-03-01-sxs-collaboration-spectre-2934.md
deleted file mode 100644
index 300ebba3..00000000
--- a/docs/_issues/2021-03-01-sxs-collaboration-spectre-2934.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["bug"]
-title: "Rectangle domain creator / Affine coordinate map should output error instead of FPE for invalid input"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/2934"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2022-11-15-sxs-collaboration-spectre-4382.md b/docs/_issues/2022-11-15-sxs-collaboration-spectre-4382.md
deleted file mode 100644
index c90c7179..00000000
--- a/docs/_issues/2022-11-15-sxs-collaboration-spectre-4382.md
+++ /dev/null
@@ -1,7 +0,0 @@
----
-title: "Domain diagnostics"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/4382"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2022-12-14-sxs-collaboration-spectre-4515.md b/docs/_issues/2022-12-14-sxs-collaboration-spectre-4515.md
deleted file mode 100644
index ae055d78..00000000
--- a/docs/_issues/2022-12-14-sxs-collaboration-spectre-4515.md
+++ /dev/null
@@ -1,7 +0,0 @@
----
-title: "Kerr in harmonic coordinates"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/4515"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2023-09-15-sxs-collaboration-spectre-5457.md b/docs/_issues/2023-09-15-sxs-collaboration-spectre-5457.md
deleted file mode 100644
index c6a37f63..00000000
--- a/docs/_issues/2023-09-15-sxs-collaboration-spectre-5457.md
+++ /dev/null
@@ -1,7 +0,0 @@
----
-title: "Add boost to GR solutions"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/5457"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2023-09-15-sxs-collaboration-spectre-5463.md b/docs/_issues/2023-09-15-sxs-collaboration-spectre-5463.md
deleted file mode 100644
index 1431cf5f..00000000
--- a/docs/_issues/2023-09-15-sxs-collaboration-spectre-5463.md
+++ /dev/null
@@ -1,7 +0,0 @@
----
-title: "Add Weyl scalars in volume of characteristic domain"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/5463"
-user: "knelli2"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2023-09-28-sxs-collaboration-spectre-5512.md b/docs/_issues/2023-09-28-sxs-collaboration-spectre-5512.md
deleted file mode 100644
index 69091efb..00000000
--- a/docs/_issues/2023-09-28-sxs-collaboration-spectre-5512.md
+++ /dev/null
@@ -1,7 +0,0 @@
----
-title: "Multi-stage piecewise polytrope"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/5512"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2024-04-23-sxs-collaboration-spectre-5938.md b/docs/_issues/2024-04-23-sxs-collaboration-spectre-5938.md
deleted file mode 100644
index 8d40574a..00000000
--- a/docs/_issues/2024-04-23-sxs-collaboration-spectre-5938.md
+++ /dev/null
@@ -1,7 +0,0 @@
----
-title: "Stop inspiral after fixed number of orbits"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/5938"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2024-05-27-aiidateam-aiida-core-6421.md b/docs/_issues/2024-05-27-aiidateam-aiida-core-6421.md
index 1dbe34d3..2aaeb2cf 100644
--- a/docs/_issues/2024-05-27-aiidateam-aiida-core-6421.md
+++ b/docs/_issues/2024-05-27-aiidateam-aiida-core-6421.md
@@ -1,5 +1,5 @@
 ---
-tags: ["aiida","computational-science","data-provenance","database","priority/nice-to-have","provenance","scheduler","ssh","type/usability","workflow","workflow-engine","workflows"]
+tags: ["aiida","computational-science","data-provenance","database","priority/nice-to-have","provenance","scheduler","ssh","topic/verdi","type/usability","workflow","workflow-engine","workflows"]
 title: "`verdi code export` does not return a message if successful"
 html_url: "https://github.com/aiidateam/aiida-core/issues/6421"
 user: "agoscinski"
diff --git a/docs/_issues/2024-05-27-aiidateam-aiida-core-6422.md b/docs/_issues/2024-05-27-aiidateam-aiida-core-6422.md
index 94e093e7..3953598b 100644
--- a/docs/_issues/2024-05-27-aiidateam-aiida-core-6422.md
+++ b/docs/_issues/2024-05-27-aiidateam-aiida-core-6422.md
@@ -1,5 +1,5 @@
 ---
-tags: ["aiida","computational-science","data-provenance","database","priority/nice-to-have","provenance","scheduler","ssh","type/usability","workflow","workflow-engine","workflows"]
+tags: ["aiida","computational-science","data-provenance","database","priority/nice-to-have","provenance","scheduler","ssh","topic/verdi","type/usability","workflow","workflow-engine","workflows"]
 title: "More user friendly yes/no prompt in `verdi computer delete` "
 html_url: "https://github.com/aiidateam/aiida-core/issues/6422"
 user: "agoscinski"
diff --git a/docs/_issues/2024-06-05-pvlib-pvlib-python-2077.md b/docs/_issues/2024-06-05-pvlib-pvlib-python-2077.md
deleted file mode 100644
index 8aad8750..00000000
--- a/docs/_issues/2024-06-05-pvlib-pvlib-python-2077.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["bug","easy","photovoltaic","python","renewable-energy","renewables","solar-energy"]
-title: "Failed unit test for nrel 2008 solar position algorithm"
-html_url: "https://github.com/pvlib/pvlib-python/issues/2077"
-user: "kurt-rhee"
-repo: "pvlib/pvlib-python"
----
-
diff --git a/docs/_issues/2024-07-13-matplotlib-matplotlib-28570.md b/docs/_issues/2024-07-13-matplotlib-matplotlib-28570.md
deleted file mode 100644
index b575763d..00000000
--- a/docs/_issues/2024-07-13-matplotlib-matplotlib-28570.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["Difficulty-Easy","Good-first-issue","Maintenance","data-science","data-visualization","gtk","matplotlib","plotting","python","qt","tk","wx"]
-title: "[MNT]: Try improving doc build speed by using PyStemmer"
-html_url: "https://github.com/matplotlib/matplotlib/issues/28570"
-user: "timhoffm"
-repo: "matplotlib/matplotlib"
----
-
diff --git a/docs/_issues/2024-09-14-mackelab-sbi-1278.md b/docs/_issues/2024-09-14-mackelab-sbi-1278.md
deleted file mode 100644
index a3188e97..00000000
--- a/docs/_issues/2024-09-14-mackelab-sbi-1278.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["bayesian-inference","bug","likelihood-free-inference","machine-learning","parameter-estimation","pytorch","simulation-based-inference"]
-title: "MCMCPosterior not pickable after vectorized slice sampling"
-html_url: "https://github.com/sbi-dev/sbi/issues/1278"
-user: "manuelgloeckler"
-repo: "mackelab/sbi"
----
-
diff --git a/docs/_issues/2024-09-14-sbi-dev-sbi-1278.md b/docs/_issues/2024-09-14-sbi-dev-sbi-1278.md
deleted file mode 100644
index 20153e41..00000000
--- a/docs/_issues/2024-09-14-sbi-dev-sbi-1278.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["bayesian-inference","bug","likelihood-free-inference","machine-learning","parameter-estimation","pytorch","simulation-based-inference"]
-title: "MCMCPosterior not pickable after vectorized slice sampling"
-html_url: "https://github.com/sbi-dev/sbi/issues/1278"
-user: "manuelgloeckler"
-repo: "sbi-dev/sbi"
----
-
diff --git a/docs/_issues/2024-10-05-vprusso-toqito-830.md b/docs/_issues/2024-10-05-vprusso-toqito-830.md
deleted file mode 100644
index febd26f3..00000000
--- a/docs/_issues/2024-10-05-vprusso-toqito-830.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["matrix-analysis","non-quantum","physics","python","python-3","quantum","quantum-computing","quantum-information","refactor","unitaryhack"]
-title: "Remove inner_product and outer_product functions"
-html_url: "https://github.com/vprusso/toqito/issues/830"
-user: "vprusso"
-repo: "vprusso/toqito"
----
-
diff --git a/docs/_issues/2024-10-08-vprusso-toqito-844.md b/docs/_issues/2024-10-08-vprusso-toqito-844.md
deleted file mode 100644
index 6f3f92eb..00000000
--- a/docs/_issues/2024-10-08-vprusso-toqito-844.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["matrix-analysis","non-quantum","physics","python","python-3","quantum","quantum-computing","quantum-information","unitaryhack"]
-title: "Add a link to the project repo in left sidebar of the documentation"
-html_url: "https://github.com/vprusso/toqito/issues/844"
-user: "purva-thakre"
-repo: "vprusso/toqito"
----
-
diff --git a/docs/_issues/2024-10-15-jupyterlab-jupyterlab-16865.md b/docs/_issues/2024-10-15-jupyterlab-jupyterlab-16865.md
deleted file mode 100644
index 832f83a9..00000000
--- a/docs/_issues/2024-10-15-jupyterlab-jupyterlab-16865.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["bug","jupyter","jupyterlab","pkgcodemirror"]
-title: "Bracket highlighting not working for multiple-line Python string literal concatenation"
-html_url: "https://github.com/jupyterlab/jupyterlab/issues/16865"
-user: "Nagidrop"
-repo: "jupyterlab/jupyterlab"
----
-
diff --git a/docs/_issues/2024-10-16-sxs-collaboration-spectre-6338.md b/docs/_issues/2024-10-16-sxs-collaboration-spectre-6338.md
deleted file mode 100644
index f261ee3b..00000000
--- a/docs/_issues/2024-10-16-sxs-collaboration-spectre-6338.md
+++ /dev/null
@@ -1,7 +0,0 @@
----
-title: "Deform excisions with Lorentz boost"
-html_url: "https://github.com/sxs-collaboration/spectre/issues/6338"
-user: "nilsvu"
-repo: "sxs-collaboration/spectre"
----
-
diff --git a/docs/_issues/2024-10-17-TeamCOMPAS-COMPAS-1244.md b/docs/_issues/2024-10-17-TeamCOMPAS-COMPAS-1244.md
deleted file mode 100644
index ef7bbc68..00000000
--- a/docs/_issues/2024-10-17-TeamCOMPAS-COMPAS-1244.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["documentation","severity_minor","urgency_low"]
-title: "Typo / inconsistency in documentation"
-html_url: "https://github.com/TeamCOMPAS/COMPAS/issues/1244"
-user: "dumbscholar"
-repo: "TeamCOMPAS/COMPAS"
----
-
diff --git a/docs/_issues/2024-10-18-dask-dask-11447.md b/docs/_issues/2024-10-18-dask-dask-11447.md
new file mode 100644
index 00000000..b5ebee11
--- /dev/null
+++ b/docs/_issues/2024-10-18-dask-dask-11447.md
@@ -0,0 +1,8 @@
+---
+tags: ["bug","dask","dataframe","numpy","pandas","pydata","python","scikit-learn","scipy"]
+title: "Dask.Visualize ignoring engine setting"
+html_url: "https://github.com/dask/dask/issues/11447"
+user: "frbelotto"
+repo: "dask/dask"
+---
+
diff --git a/docs/_issues/2024-10-19-xgi-org-xgi-602.md b/docs/_issues/2024-10-19-xgi-org-xgi-602.md
deleted file mode 100644
index b0031964..00000000
--- a/docs/_issues/2024-10-19-xgi-org-xgi-602.md
+++ /dev/null
@@ -1,8 +0,0 @@
----
-tags: ["higher-order","higher-order-networks","hypergraphs","network-science","new-feature"]
-title: "Add a `unique` method to stats"
-html_url: "https://github.com/xgi-org/xgi/issues/602"
-user: "nwlandry"
-repo: "xgi-org/xgi"
----
-
diff --git a/docs/_issues/2024-10-20-PennyLaneAI-catalyst-1220.md b/docs/_issues/2024-10-20-PennyLaneAI-catalyst-1220.md
new file mode 100644
index 00000000..0f8092f7
--- /dev/null
+++ b/docs/_issues/2024-10-20-PennyLaneAI-catalyst-1220.md
@@ -0,0 +1,8 @@
+---
+tags: ["autodiff","automatic-differentiation","compiler","jax","jit","llvm","mlir","pennylane","python","qir","quantum","quantum-compiler","quantum-computing"]
+title: "Add merge rotation patterns for `qml.Rot` and `qml.CRot`"
+html_url: "https://github.com/PennyLaneAI/catalyst/issues/1220"
+user: "paul0403"
+repo: "PennyLaneAI/catalyst"
+---
+
diff --git a/docs/_issues/2024-10-20-xgi-org-xgi-606.md b/docs/_issues/2024-10-20-xgi-org-xgi-606.md
new file mode 100644
index 00000000..383cb3d6
--- /dev/null
+++ b/docs/_issues/2024-10-20-xgi-org-xgi-606.md
@@ -0,0 +1,8 @@
+---
+tags: ["higher-order","higher-order-networks","hypergraphs","improve","network-science"]
+title: "Rewrite the stats `tohist()` method"
+html_url: "https://github.com/xgi-org/xgi/issues/606"
+user: "nwlandry"
+repo: "xgi-org/xgi"
+---
+
diff --git a/docs/_issues/2024-10-21-tardis-sn-tardis-2863.md b/docs/_issues/2024-10-21-tardis-sn-tardis-2863.md
new file mode 100644
index 00000000..0047e550
--- /dev/null
+++ b/docs/_issues/2024-10-21-tardis-sn-tardis-2863.md
@@ -0,0 +1,8 @@
+---
+tags: ["astrophysics","easy","python","radiative-transfer","science","supernova"]
+title: "change M_PI to not use arccos"
+html_url: "https://github.com/tardis-sn/tardis/issues/2863"
+user: "wkerzendorf"
+repo: "tardis-sn/tardis"
+---
+
diff --git a/docs/_issues/2024-10-21-tardis-sn-tardis-2864.md b/docs/_issues/2024-10-21-tardis-sn-tardis-2864.md
new file mode 100644
index 00000000..610f9a96
--- /dev/null
+++ b/docs/_issues/2024-10-21-tardis-sn-tardis-2864.md
@@ -0,0 +1,8 @@
+---
+tags: ["astrophysics","python","radiative-transfer","science","supernova"]
+title: "Change `expected` to `expected_fh` if it is a file handler"
+html_url: "https://github.com/tardis-sn/tardis/issues/2864"
+user: "atharva-2001"
+repo: "tardis-sn/tardis"
+---
+
diff --git a/docs/_issues/2024-10-22-pandas-dev-pandas-60084.md b/docs/_issues/2024-10-22-pandas-dev-pandas-60084.md
new file mode 100644
index 00000000..99cb1b7a
--- /dev/null
+++ b/docs/_issues/2024-10-22-pandas-dev-pandas-60084.md
@@ -0,0 +1,8 @@
+---
+tags: ["Bug","Needs-Tests","Timestamp","alignment","data-analysis","data-science","flexible","hashing","pandas","python"]
+title: "BUG: arithmetic can break equality-hash invariant for Timestamp during DST transition"
+html_url: "https://github.com/pandas-dev/pandas/issues/60084"
+user: "Kxnr"
+repo: "pandas-dev/pandas"
+---
+
diff --git a/docs/_issues/2024-10-22-smith-chem-wisc-MetaMorpheus-2428.md b/docs/_issues/2024-10-22-smith-chem-wisc-MetaMorpheus-2428.md
new file mode 100644
index 00000000..e069b51c
--- /dev/null
+++ b/docs/_issues/2024-10-22-smith-chem-wisc-MetaMorpheus-2428.md
@@ -0,0 +1,8 @@
+---
+tags: ["Bug","calibration","database-search","discovery","mass-match","proteome","proteomics-database-search","ptm","spectra","uniprot"]
+title: "Repeated analysis duplicates auto generated manuscript prose"
+html_url: "https://github.com/smith-chem-wisc/MetaMorpheus/issues/2428"
+user: "nbollis"
+repo: "smith-chem-wisc/MetaMorpheus"
+---
+
diff --git a/docs/_issues/2024-10-23-KingsburyLab-pyEQL-195.md b/docs/_issues/2024-10-23-KingsburyLab-pyEQL-195.md
new file mode 100644
index 00000000..25b98bc7
--- /dev/null
+++ b/docs/_issues/2024-10-23-KingsburyLab-pyEQL-195.md
@@ -0,0 +1,8 @@
+---
+tags: ["Good-First-Issue","docs"]
+title: "Documentation: minor fixes"
+html_url: "https://github.com/KingsburyLab/pyEQL/issues/195"
+user: "rkingsbury"
+repo: "KingsburyLab/pyEQL"
+---
+
diff --git a/docs/_issues/2024-10-24-xgi-org-xgi-610.md b/docs/_issues/2024-10-24-xgi-org-xgi-610.md
new file mode 100644
index 00000000..a33fbfd8
--- /dev/null
+++ b/docs/_issues/2024-10-24-xgi-org-xgi-610.md
@@ -0,0 +1,8 @@
+---
+tags: ["documentation","higher-order","higher-order-networks","hypergraphs","network-science"]
+title: "add examples to Gallery"
+html_url: "https://github.com/xgi-org/xgi/issues/610"
+user: "maximelucas"
+repo: "xgi-org/xgi"
+---
+
diff --git a/docs/_issues/2024-10-25-TeamCOMPAS-COMPAS-1254.md b/docs/_issues/2024-10-25-TeamCOMPAS-COMPAS-1254.md
new file mode 100644
index 00000000..11897c60
--- /dev/null
+++ b/docs/_issues/2024-10-25-TeamCOMPAS-COMPAS-1254.md
@@ -0,0 +1,7 @@
+---
+title: "Some Typos"
+html_url: "https://github.com/TeamCOMPAS/COMPAS/issues/1254"
+user: "dumbscholar"
+repo: "TeamCOMPAS/COMPAS"
+---
+
diff --git a/docs/_issues/2024-10-26-scipy-scipy-21759.md b/docs/_issues/2024-10-26-scipy-scipy-21759.md
new file mode 100644
index 00000000..b67b016f
--- /dev/null
+++ b/docs/_issues/2024-10-26-scipy-scipy-21759.md
@@ -0,0 +1,8 @@
+---
+tags: ["algorithms","closember","deprecated","python","scientific-computing","scipy","scipy.special"]
+title: "DEP: remove `special.btdtr` and `special.btdtri`"
+html_url: "https://github.com/scipy/scipy/issues/21759"
+user: "dschmitz89"
+repo: "scipy/scipy"
+---
+