From 44c302321f65e08551bcc7ab8704770a5056ec0c Mon Sep 17 00:00:00 2001 From: github-actions Date: Wed, 10 Jan 2024 20:24:27 +0000 Subject: [PATCH] Automated deployment to update first issues 2024-01-10 --- .github/empty.txt | 9504 ++++++++--------- .github/repos.txt | 486 +- .../2020-07-30-pandas-dev-pandas-35484.md | 8 - .../2021-12-09-matplotlib-matplotlib-21898.md | 8 + .../2023-04-02-biaslab-RxInfer.jl-94.md | 2 +- ...3-12-15-firedrakeproject-firedrake-3294.md | 8 - docs/_issues/2023-12-17-vprusso-toqito-379.md | 8 - docs/_issues/2023-12-17-vprusso-toqito-381.md | 8 - .../2024-01-03-matplotlib-matplotlib-27596.md | 8 - docs/_issues/2024-01-08-scipy-scipy-19836.md | 2 +- .../2024-01-09-pandas-dev-pandas-56804.md | 8 + 11 files changed, 5013 insertions(+), 5037 deletions(-) delete mode 100644 docs/_issues/2020-07-30-pandas-dev-pandas-35484.md create mode 100644 docs/_issues/2021-12-09-matplotlib-matplotlib-21898.md delete mode 100644 docs/_issues/2023-12-15-firedrakeproject-firedrake-3294.md delete mode 100644 docs/_issues/2023-12-17-vprusso-toqito-379.md delete mode 100644 docs/_issues/2023-12-17-vprusso-toqito-381.md delete mode 100644 docs/_issues/2024-01-03-matplotlib-matplotlib-27596.md create mode 100644 docs/_issues/2024-01-09-pandas-dev-pandas-56804.md diff --git a/.github/empty.txt b/.github/empty.txt index 135f6890..95354975 100644 --- a/.github/empty.txt +++ b/.github/empty.txt @@ -1,4832 +1,4832 @@ -https://github.com/chenwuperth/rgz_rcnn -https://github.com/ropensci/opentripplanner -https://github.com/ropensci/taxlist -https://github.com/remi-adam/minot -https://github.com/yanzhanglab/Graph2GO -https://github.com/CavendishAstrophysics/anmap -https://github.com/Martindelosrios/ROGER -https://github.com/alan-turing-institute/DetectorChecker -https://github.com/gerddie/maxflow -https://github.com/JohannesBuchner/UltraNest -https://github.com/TriPed-Robot/trip_kinematics -https://github.com/Illumina/MarViN 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-https://github.com/cdanielmachado/carveme -https://github.com/tcherninceline/PPInteractions -https://github.com/PabloVD/HaloGraphNet -https://github.com/H-E-L-P/XID_plus -https://github.com/COMBINE-lab/RapMap -https://github.com/dzesmin/TEA -https://github.com/mpi4jax/mpi4jax -https://github.com/Hoohm/CITE-seq-Count -https://github.com/CatarinaMMarques/FisherCosmology -https://github.com/jonathanHuwP/CrystalGrowthTracker -https://github.com/NLeSC/hadrianus-scripts -https://github.com/tholoien/XDGMM -https://github.com/HKU-BAL/Clair3 -https://github.com/ropensci/binman -https://github.com/sambit-giri/BCMemu -https://github.com/PeterKamphuis/FAT -https://github.com/VMBoehm/MADLens -https://github.com/pikarpov-LANL/Sapsan -https://github.com/ropensci/piggyback -https://github.com/kdm9/libqcpp -https://github.com/ropensci/plater -https://github.com/privong/pyMCSpearman -https://github.com/joshspeagle/dynesty -https://github.com/wesleyburr/subMaldi -https://github.com/dkirkby/gphist -https://github.com/ropensci/rtweet -https://github.com/natir/rustyread -https://github.com/astropy/halotools -https://github.com/ndaniyar/aphot -https://github.com/ChileanVirtualObservatory/indexing_utfsm -https://github.com/meinardmueller/libfmp -https://github.com/rqtl/qtl2 -https://github.com/ADAH-EviDENce/evidence -https://github.com/VChristiaens/special -https://github.com/EliabCanul/nauyaca -https://github.com/pcubillos/mc3 -https://github.com/wvanzeist/riroriro -https://github.com/NielsenBerkeleyLab/sconce -https://github.com/rajeshrinet/pystokes -https://github.com/cabb99/open3spn2 -https://github.com/NLeSC/Massive-PotreeConverter -https://github.com/timchurches/NetEpi-Collection -https://github.com/pynbody/genetIC -https://github.com/pelahi/VELOCIraptor-STF -https://github.com/ropensci/colocr -https://github.com/xenon-middleware/xenon-cli -https://github.com/pmvreeswijk/BlackBOX -https://github.com/tikk3r/lofar-h5plot +https://github.com/mkenworthy/exorings +https://github.com/ropensci/ssh +https://github.com/ropensci/circle https://github.com/hdeeg/KvW -https://github.com/brentp/goleft -https://github.com/dh4gan/tache -https://github.com/pierrepo/autoclassweb -https://github.com/astro-informatics/comb -https://github.com/jmcbroome/BTE -https://github.com/pinellolab/CRISPRitz -https://github.com/morpheus-project/morpheus -https://github.com/biocore/unifrac -https://github.com/Sydney-Informatics-Hub/geodata-harvester -https://github.com/mkelley/calviacat -https://github.com/jradavenport/appaloosa -https://github.com/rdpstaff/TaxonomyTree -https://github.com/eblur/dust -https://github.com/GATB/MindTheGap -https://github.com/rizkg/BBHash -https://github.com/mgalardini/pyseer -https://github.com/barklem/kaulakys -https://github.com/rudolffu/pyfosc -https://github.com/ropensci/rfisheries -https://github.com/raufs/skDER -https://github.com/BasilioRuiz/SIR-code -https://github.com/agsreejith/CONTROL -https://github.com/stamatak/ExaML -https://github.com/Zilong-Li/PCAone -https://github.com/FastMLC/fMLC -https://github.com/jenniferlu717/Bracken -https://github.com/davidechicco/geneExpressionFromGEO -https://github.com/DaehwanKimLab/hisat2 -https://github.com/jonas/tig -https://github.com/hall-lab/bamkit -https://github.com/mrc-ide/covid-sim -https://github.com/prashjet/popkinmocks -https://github.com/jendelel/PrankWebApp -https://github.com/ryanvarley/ExoData -https://github.com/python-streamz/streamz -https://github.com/will-rowe/hulk -https://github.com/danielkoll/tidally-locked-coordinates -https://github.com/SandyYuan/GRAND-HOD -https://github.com/yukiteruono/pbsim2 -https://github.com/GilbertLabUCSF/CanDI -https://github.com/ToHanwei/Genome2OR -https://github.com/pynbody/pynbody -https://github.com/myfang2021/VIPPID -https://github.com/JLBLine/PUMA -https://github.com/emossoux/LIFELINE -https://github.com/dpryan79/MethylDackel -https://github.com/IndrajeetPatil/statsExpressions -https://github.com/ropensci/cchecks -https://github.com/ckarako/RRATtrap -https://github.com/EMBL-Hentze-group/htseq-clip -https://github.com/coccoinomane/zelda -https://github.com/ihrke/pypillometry -https://github.com/asgr/NFWdist -https://github.com/dgerosa/gwdet -https://github.com/omuse-geoscience/omuse -https://github.com/Beuth-Erdelt/DBMS-Benchmarker -https://github.com/ropensci/arkdb -https://github.com/samhforbes/PupillometryR -https://github.com/masadcv/FastGeodis -https://github.com/toros-astro/astroalign-legacy -https://github.com/leprojetcastor/castor -https://github.com/ropensci/rnaturalearthhires -https://github.com/drupke/ifsred -https://github.com/EmmanuelSchaan/LensQuEst -https://github.com/hetalang/heta-compiler -https://github.com/ropensci/pathviewr -https://github.com/kendomaniac/rCASC -https://github.com/xfangcosmo/FFTLog-and-beyond -https://github.com/TearsWaiting/MIMML -https://github.com/gabraham/flashpca -https://github.com/ADThomas-astro/oxaf -https://github.com/stefanradev93/BayesFlow -https://github.com/caseyjlaw/rtpipe -https://github.com/fbreitwieser/krakenuniq -https://github.com/TRASAL/AMBER -https://github.com/adrn/pyia -https://github.com/biomedia-mira/masf -https://github.com/broadinstitute/cromwell -https://github.com/jianlin-cheng/DRCon -https://github.com/JuliaMatrices/BlockBandedMatrices.jl -https://github.com/ucl-exoplanets/pylightcurve -https://github.com/kernsuite-debian/parseltongue -https://github.com/4pisky/fourpisky-core -https://github.com/Ouranosinc/xclim -https://github.com/hpparvi/ldtk -https://github.com/ropensci/neotoma -https://github.com/galtay/urchin -https://github.com/ImperialCollegeLondon/UVLM -https://github.com/nanograv/enterprise -https://github.com/Singh-Lab/uKIN -https://github.com/edwardoughton/itmlogic -https://github.com/auctus-team/pycapacity -https://github.com/kircherlab/ReMM -https://github.com/NLeSC/ExtJS-DateTime -https://github.com/user29A/fastrometry -https://github.com/upb-lea/gym-electric-motor -https://github.com/Electrostatics/apbs -https://github.com/Bahler-Lab/pyphe -https://github.com/NLESC-JCER/QMCTorch -https://github.com/shikhar249/OnionMHC -https://github.com/pec27/hfof -https://github.com/MJTemple/qsogen -https://github.com/ropensci/rb3 -https://github.com/ropensci/datapack -https://github.com/RECETOX/RIAssigner -https://github.com/IMMM-SFA/gamut -https://github.com/transientskp/pyse -https://github.com/sxs-collaboration/gwsurrogate -https://github.com/editeodoro/Bbarolo -https://github.com/fast-data-transfer/fdt -https://github.com/eggnogdb/eggnog-mapper -https://github.com/curl/curl -https://github.com/mirochaj/sedop -https://github.com/918particle/AskaryanModule -https://github.com/E3SM-Project/gdess -https://github.com/sunnyvagnozzi/Braneworld-extra-dimensions -https://github.com/JCGoran/coffe -https://github.com/UCBerkeleySETI/turbo_seti -https://github.com/mcsiple/mmrefpoints -https://github.com/qiime2/q2-vsearch -https://github.com/cylammarco/ASPIRED -https://github.com/multiply-org/sar-pre-processing -https://github.com/nutjunkie/IQmol -https://github.com/shengjin/Nii -https://github.com/citation-file-format/cff-initializer-javascript -https://github.com/zpliulab/GeoBind -https://github.com/justinmathias/isocalcR -https://github.com/kavir1698/EvoDynamics.jl -https://github.com/bokulich-lab/q2-fondue -https://github.com/Ruiz-HCI-Lab/ggMOB -https://github.com/hyperopt/hyperopt -https://github.com/kevin218/Eureka -https://github.com/cosmo-ethz/CosmoHammer -https://github.com/nbarbey/TomograPy -https://github.com/WatsonGroupTCD/J2suscep -https://github.com/astroCV/astroCV -https://github.com/lydialucchesi/Vizumap -https://github.com/SchmollerLab/Cell_ACDC -https://github.com/ronshnapp/MyPTV -https://github.com/souzamonteiro/cnatool -https://github.com/plumed/plumed2 -https://github.com/locasto/libdisorder -https://github.com/jonathansick/starfish -https://github.com/NLeSC/EEG-epilepsy-diagnosis -https://github.com/jackmwolf/tehtuner -https://github.com/broadinstitute/Drop-seq -https://github.com/arviz-devs/preliz -https://github.com/s4hts/HTStream -https://github.com/LINNAE-project/SFB-Annotator -https://github.com/JD2112/methylr +https://github.com/HenrykHaniewicz/PSRVoid +https://github.com/dtanoglidis/DeepShadows +https://github.com/soerenslarsen/ISPy3 +https://github.com/ropensci-archive/monkeylearn +https://github.com/yanzhanglab/Graph2GO +https://github.com/christinahedges/contaminante +https://github.com/ropensci/grainchanger +https://github.com/hveerten/boxfit +https://github.com/bethgelab/foolbox +https://github.com/astropy/astroscrappy +https://github.com/davidkipping/LDC3 +https://github.com/jpahlers/LASR +https://github.com/BDI-pathogens/OpenABM-Covid19-model-paper +https://github.com/psi4/psi4 +https://github.com/PENTACLE-Team/PENTACLE +https://github.com/ydLiu-HIT/deSALT +https://github.com/liulizhi1996/HPODNets +https://github.com/PacificBiosciences/pbcore +https://github.com/Nic5472K/ScientificData2021_HealthGym https://github.com/bcerutti/Zeltron-code -https://github.com/ropensci/mapr -https://github.com/ropensci/onekp -https://github.com/lsds/Crossbow -https://github.com/smithlabcode/abismal -https://github.com/tinglabs/scAIDE -https://github.com/CNIC-Proteomics/TurboPutative-web -https://github.com/DreamCloud-Project/McSim-TLM-NoC -https://github.com/xiaochuanle/MECAT2 -https://github.com/katholt/Kaptive -https://github.com/GRTLCollaboration/GRChombo -https://github.com/tibordome/cosmic_profiles -https://github.com/justincfeng/PoMiN -https://github.com/sdss/marvin -https://github.com/ketch/nodepy -https://github.com/AlexanderLabWHOI/EUKulele -https://github.com/NeoGeographyToolkit/StereoPipeline -https://github.com/mlower/rmnest -https://github.com/tupui/scipy -https://github.com/myinxd/MCRGNet -https://github.com/xenon-middleware/xenon -https://github.com/radio-astro-tools/spectral-cube -https://github.com/MikeHeiber/Excimontec -https://github.com/Anirbancosmo/Limpy -https://github.com/CoolWorlds/exoinformatics -https://github.com/wokast/RePrimAnd -https://github.com/NIFTI-Imaging/nifti_clib -https://github.com/fair-data/fairdatapoint-client -https://github.com/ropensci/Rpolyhedra -https://github.com/Trovemaster/exocross -https://github.com/SWIFTSIM/emulator -https://github.com/sjforeman/StringFast -https://github.com/swagnercarena/ovejero -https://github.com/sid-krish/Rhometa_Full_Genome -https://github.com/kiyo-masui/bitshuffle -https://github.com/ManuelBehrendt/Mera.jl -https://github.com/jiujiezz/tsnad -https://github.com/4dn-dcic/pairix -https://github.com/SCM-NV/nano-qmflows -https://github.com/mischaschirmer/nebular -https://github.com/thachnguyen/CRISPRnano -https://github.com/CHRF-Genomics/Paratype -https://github.com/ianvcaldas/smalldisco -https://github.com/conda/conda -https://github.com/EbmeyerSt/GEnView -https://github.com/DrSoulain/PREVIS -https://github.com/lightning-project/lightning -https://github.com/skyfielders/python-skyfield -https://github.com/abelson-lab/smMIP-tools -https://github.com/Cristianetaniguti/Reads2Map -https://github.com/ggciag/mandyoc -https://github.com/mroosmalen/nanosv -https://github.com/sanger-pathogens/circlator +https://github.com/alexander-mead/collapse +https://github.com/jadexter/grtrans +https://github.com/jobovy/segueSelect +https://github.com/exafmm/exafmm-t +https://github.com/ICRAR/ProFit +https://github.com/nkallima/sim-universal-construction +https://github.com/3D-e-Chem/knime-gpcrdb +https://github.com/IPIS-XieLei/CNTSeg +https://github.com/pyplati/platipy +https://github.com/variomes/sibtm-variomes +https://github.com/LSSTDESC/descqa +https://github.com/AllenInstitute/bmtk +https://github.com/PRIS-CV/DS-UI +https://github.com/oliveirara/polyMV https://github.com/tfwillems/HipSTR -https://github.com/ebundhoo/TAGOPSIN -https://github.com/ropensci/geojsonio -https://github.com/ndaniel/fusioncatcher -https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI -https://github.com/ratt-ru/breizorro -https://github.com/guillochon/MOSFiT -https://github.com/Guo-Jian-Wang/colfi -https://github.com/keatonb/TESS_PRF -https://github.com/MrShoenel/metrics-as-scores -https://github.com/zpenoyre/OoT -https://github.com/deepmedic/deepmedic -https://github.com/EigenDev/simbi -https://github.com/thegenemyers/DEXTRACTOR -https://github.com/tmux/tmux -https://github.com/DamCB/tyssue -https://github.com/FitSNAP/FitSNAP -https://github.com/mpi4py/shmem4py -https://github.com/iomega/paired-data-form -https://github.com/UoMMIB/TFBMiner -https://github.com/BradhamLab/icat -https://github.com/BobAubouin/Python_Anesthesia_Simulator -https://github.com/cbrueffer/tophat-recondition -https://github.com/barahona-research-group/hcga -https://github.com/hsergi/Roman_Coronagraph_ETC -https://github.com/ecological-cities/home2park -https://github.com/connectomicslab/connectomemapper3 -https://github.com/ropensci/unrtf -https://github.com/GATB/bcalm -https://github.com/shaniAmare/long_read_tools -https://github.com/txopen/histoc -https://github.com/chanzuckerberg/cellxgene -https://github.com/PaulRitsche/DL_Track_US -https://github.com/cbg-ethz/LolliPop -https://github.com/reality/klarigi -https://github.com/3D-e-Chem/knime-sstea -https://github.com/pmvreeswijk/ZOGY -https://github.com/markheckmann/OpenRepGrid.ic -https://github.com/voutcn/megahit -https://github.com/singularityhub/sregistry -https://github.com/ssadedin/bazam -https://github.com/CadenArmstrong/simuTrans -https://github.com/Cadaei-Yuvxvs/OSHy-X -https://github.com/ropensci/EndoMineR -https://github.com/epfl-radio-astro/PINION -https://github.com/morispi/LRez -https://github.com/AstarVienna/Pyckles -https://github.com/SeaIce-Math/SubZero -https://github.com/CullanHowlett/l-picola -https://github.com/mateidavid/nanocall -https://github.com/nemesiscode/radtrancode -https://github.com/jeaadams/ExoPix -https://github.com/AA-ALERT/Dedispersion -https://github.com/eggplantbren/DNest3 -https://github.com/andr1976/HydDown -https://github.com/katholt/Kleborate -https://github.com/alejostark/phase_space_cosmo_fisher -https://github.com/spacetelescope/specview -https://github.com/pytoolz/toolz -https://github.com/skendrew/milkywayproject_triggering -https://github.com/cmillion/gPhoton -https://github.com/birnstiel/two-pop-py -https://github.com/bioturing/hera -https://github.com/Open-ET/flux-data-qaqc -https://github.com/jodyphelan/TBProfiler -https://github.com/ropensci/scrubr -https://github.com/neuralhydrology/neuralhydrology -https://github.com/yuliang419/Astronet-Triage -https://github.com/ElsevierSoftwareX/SOFTX_2020_119 -https://github.com/tseemann/barrnap -https://github.com/mihanke/athos -https://github.com/IRCAD/camp -https://github.com/richteague/bettermoments -https://github.com/rmjarvis/Piff -https://github.com/apcamargo/prodigal-gv -https://github.com/blind-contours/SuperNOVA -https://github.com/entangled/entangled -https://github.com/vinisalazar/metaphor -https://github.com/luizfelippesr/magnetizer -https://github.com/luinix/pesco -https://github.com/chenjj2/forecaster -https://github.com/mlares/hearsay -https://github.com/KVSlab/turtleFSI -https://github.com/AlexMaraio/WeakLensingQML -https://github.com/Illumina/SpliceAI -https://github.com/oliveirara/polyMV -https://github.com/ddarriba/prottest3 -https://github.com/opimwue/ddop -https://github.com/BiodataAnalysisGroup/UMIc -https://github.com/sandialabs/pvOps -https://github.com/Peppags/CNN-SVR -https://github.com/DICP1810/SpotLink -https://github.com/ropensci/tiler -https://github.com/tomasplsek/CADET -https://github.com/cog-imperial/GPdoemd -https://github.com/inpefess/gym-saturation -https://github.com/BioComputingUP/ring-pymol -https://github.com/seheonoh/2dbat -https://github.com/cog-imperial/galini -https://github.com/LCOGT/banzai-nres -https://github.com/Valdes-Tresanco-MS/NbThermo -https://github.com/merenlab/anvio -https://github.com/portsmouth/cmbview -https://github.com/ropensci/fauxpas -https://github.com/jbrakensiek/CORBITS -https://github.com/RBrearton/islatu -https://github.com/nhcrisp/ADBSat -https://github.com/ropensci/CoordinateCleaner -https://github.com/BitSeq/BitSeq -https://github.com/mikecokina/elisa -https://github.com/joshuakt/Oxygen-False-Positives -https://github.com/bbercovici/SBGAT -https://github.com/MIT-STARLab/deconfuser -https://github.com/tekpinar/correlationplus -https://github.com/spglib/spgrep -https://github.com/askap-craco/CELEBI -https://github.com/MD-Studio/MDStudio -https://github.com/brentp/hts-nim-tools -https://github.com/EGaraldi/corecon -https://github.com/SWE-UniStuttgart/Qlunc -https://github.com/noraeisner/LATTE -https://github.com/joshjchayes/TransitFit -https://github.com/pmelchior/scarlet -https://github.com/PolyChord/PolyChordLite -https://github.com/cosimoNigro/agnpy -https://github.com/astro-informatics/s2 -https://github.com/GeoffDuniam/FITS-Code-Examples -https://github.com/henry2004y/Vlasiator.jl -https://github.com/OrlandoLam/SAMT -https://github.com/opengeos/segment-geospatial -https://github.com/MD-Studio/cerise -https://github.com/mrempel/geohexviz -https://github.com/SpaceML/GalaxyGAN -https://github.com/SysBioUAB/hpi_predictor -https://github.com/seheonoh/baygaud -https://github.com/matteobreschi/bajes -https://github.com/thomas0809/MolScribe -https://github.com/tensorlayer/TensorLayer -https://github.com/basp-group/SARA-PPD -https://github.com/ERA-URBAN/fm128_radar -https://github.com/wullm/zwindstroom -https://github.com/NiallJeffrey/BornRaytrace -https://github.com/LSSTDESC/sacc -https://github.com/jdiasn/lidarSuit -https://github.com/PengyiZhang/DRR4Covid -https://github.com/ropensci/git2rdata -https://github.com/rajeshmondal18/ReionYuga -https://github.com/gromacs/gromacs -https://github.com/enveda/RPath -https://github.com/ELELAB/RosettaDDGPrediction -https://github.com/geospace-code/h5fortran -https://github.com/ropensci/codemetar -https://github.com/quadram-institute-bioscience/dadaist2 -https://github.com/RealTimeGenomics/rtg-tools -https://github.com/dvallesp/vortex -https://github.com/HuttleyLab/scitrack -https://github.com/IBM/fold2seq -https://github.com/CosmoStatGW/WF4Py -https://github.com/astro-datalab/noaosourcecatalog -https://github.com/RasmussenLab/vamb -https://github.com/SNOwGLoBES/snowglobes -https://github.com/DistrictDataLabs/yellowbrick -https://github.com/marius311/pypico -https://github.com/fstrozzi/Fastool -https://github.com/sieunhanbom04/support-exploration-matrix-factorization -https://github.com/annehutter/polyspectrum -https://github.com/gbouras13/plassembler -https://github.com/tensorly/viz -https://github.com/cjbarrie/academictwitteR -https://github.com/rabrahm/zaspe -https://github.com/FredHutch/SEACR -https://github.com/ropensci/bittrex -https://github.com/GreenBankObservatory/gbtgridder -https://github.com/ucl-exoplanets/ExoGAN_public -https://github.com/kathlandgren/SWAMPE -https://github.com/bioAI-Oslo/Spikeometric -https://github.com/upb-lea/ElectricGrid.jl -https://github.com/DEIB-GECO/ReRa -https://github.com/ClaudioZandonella/PRDA -https://github.com/bhorowitz/HyPhy-public -https://github.com/lh3/wgsim -https://github.com/ropensci/microdemic -https://github.com/indraniel/fqgrep -https://github.com/astrostat/Automark -https://github.com/ropensci/rdataretriever -https://github.com/steineggerlab/foldseek -https://github.com/jobovy/extreme-deconvolution -https://github.com/SynthSys/pyOmeroUpload -https://github.com/soedinglab/MMseqs2 -https://github.com/micbia/SubgridClumping -https://github.com/drphilmarshall/Pangloss -https://github.com/ImperialCollegeLondon/EpiCollectplus -https://github.com/nickhand/pyRSD -https://github.com/wfondrie/mokapot -https://github.com/msm550/DMATIS -https://github.com/parsotat/BatAnalysis -https://github.com/maize-genetics/rTASSEL -https://github.com/ImproPhoto/pymicmac -https://github.com/margudo/LSSGALPY -https://github.com/kno10/python-kmedoids -https://github.com/legolason/PyQSOFit -https://github.com/mjoppich/bioGUItools -https://github.com/iontorrent/TS -https://github.com/gwpy/gwpy -https://github.com/VALENCE-software/VALENCE -https://github.com/MaayanLab/signature-commons-ui -https://github.com/cdominik/optool -https://github.com/Taywee/args -https://github.com/DrJCarson/BoundedCoalescent -https://github.com/Yu-Group/veridical-flow -https://github.com/panoptes-organization/panoptes -https://github.com/pencil-code/pencil-code -https://github.com/zenitani/OpenMHD -https://github.com/astrogilda/mirkwood -https://github.com/eaobservatory/jcmt_coadd -https://github.com/biocore-ntnu/epic2 -https://github.com/ArgonneCPAC/diffstar -https://github.com/ropensci/tinkr -https://github.com/Ajstros/pyripherals -https://github.com/shenwei356/unikmer -https://github.com/twosixlabs/magicwand-datatool 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-https://github.com/xuanxu/starmatrix -https://github.com/tmcclintock/AReconstructionTool -https://github.com/lh3/bioawk -https://github.com/sciapp/sampledb -https://github.com/dmnfarrell/snpgenie -https://github.com/statOmics/satuRnPaper -https://github.com/Shyentist/fish-r-man -https://github.com/beagle-dev/beagle-lib -https://github.com/farhanferoz/SkyNet -https://github.com/thejackal360/OpenPelt-Public -https://github.com/rgerum/pylustrator -https://github.com/alphaparrot/ExoPlaSim -https://github.com/julblarod/SOPHISM -https://github.com/ropensci-archive/reviewer -https://github.com/ropensci/rdflib -https://github.com/tvwenger/WISP -https://github.com/vferat/pycrostates -https://github.com/D-Crake/HEADSS -https://github.com/lutteropp/NetRAX -https://github.com/lnferris/ocean_data_tools -https://github.com/Jammy2211/PyAutoGalaxy -https://github.com/single-cell-genetics/cellsnp-lite -https://github.com/fabiopardo/tonic -https://github.com/ocean-eddy-cpt/gcm-filters -https://github.com/Illumina/akt -https://github.com/lukapecnik/NiaAML -https://github.com/TRIQS/solid_dmft -https://github.com/savila/HALOGEN -https://github.com/nasa/K2CE -https://github.com/freesurfer/freesurfer -https://github.com/freemed/freeshim -https://github.com/ropensci/robotstxt -https://github.com/tgrimes/SeqNet -https://github.com/alex-b-davis/gubas -https://github.com/aprsa/dips -https://github.com/brunettsp/myosothes -https://github.com/xcompact3d/Incompact3d -https://github.com/julia-wrobel/registr -https://github.com/pwry/lextes -https://github.com/skendrew/midIR_sensitivity -https://github.com/brentp/smoove -https://github.com/epfl-radio-astro/LiSA -https://github.com/klee/klee -https://github.com/LSSTDESC/NaMaster -https://github.com/skovaka/UNCALLED -https://github.com/ropensci/GSODR -https://github.com/jiahecui/SenAOReFoc -https://github.com/ropensci/refimpact -https://github.com/jmd-dk/concept -https://github.com/asgr/ProFound -https://github.com/jdhenshaw/scousepy -https://github.com/nialov/fractopo -https://github.com/BarquistLab/mason_paper -https://github.com/alesantuz/musclesyneRgies -https://github.com/vfonov/DARQ -https://github.com/astroumd/miriad -https://github.com/ConnorDonegan/geostan -https://github.com/COMBINE-lab/salmon -https://github.com/Illumina/strelka -https://github.com/ericagol/TTVFaster -https://github.com/astrostat/BASCS -https://github.com/dvallesp/ASOHF -https://github.com/auranic/ClinTrajan -https://github.com/oschwengers/platon -https://github.com/VChristiaens/vcal_sphere -https://github.com/wasserman-group/pyCADMium -https://github.com/juliotux/astropop -https://github.com/macrocosme/amber_meta -https://github.com/Sulstice/cocktail-shaker -https://github.com/krab1k/ChargeFW2 -https://github.com/ranieremenezes/easyFermi -https://github.com/ropensci/hoardr -https://github.com/oscaribv/exotrending -https://github.com/NeamulKabir/EnsembleFam -https://github.com/SAMI-Galaxy-Survey/sami -https://github.com/naonori/hitomi -https://github.com/ilaudy/PIAO -https://github.com/MoreiraLAB/mensadb-open -https://github.com/nanoporetech/ont_fast5_api -https://github.com/radiocosmology/draco -https://github.com/gmbrandt/HTOF -https://github.com/idptools/metapredict -https://github.com/vbakis/mrs -https://github.com/ropensci/wdman -https://github.com/CityU-AIM-Group/HTD -https://github.com/brentp/cyvcf2 -https://github.com/soraxas/sbp-env -https://github.com/parkus/ffd -https://github.com/yrjia1015/CRISPRCasStack -https://github.com/jpober/21cmSense -https://github.com/ajeldorado/falco-matlab -https://github.com/hveerten/katu -https://github.com/cov-lineages/pangolin -https://github.com/Ramialison-Lab-ARMI/3DCardiomics -https://github.com/AlexMikes/AutoFunc -https://github.com/seap-udea/iWander -https://github.com/max-little/GRAPL -https://github.com/QZH2022/germline_flow -https://github.com/JeffLCoughlin/EphemMatch -https://github.com/lifs-tools/jmzTab-m -https://github.com/ropensci/nasapower -https://github.com/desihub/fastspecfit -https://github.com/csuhjhjhj/GCNCMI -https://github.com/DynaSlum/satsense -https://github.com/vpc-ccg/svict -https://github.com/0xCoto/Virgo -https://github.com/gagneurlab/drop -https://github.com/HoBeZwe/SphericalScattering.jl -https://github.com/inrae/RCaNmodel -https://github.com/atomneb/AtomNeb-py -https://github.com/bencebeky/spotrod -https://github.com/snakemake/snakemake -https://github.com/eabaron/synow -https://github.com/BjoernBiltzinger/pyspi -https://github.com/easystats/effectsize -https://github.com/nikhilroxtomar/FANet -https://github.com/johannesulf/dsigma -https://github.com/ImperialCollegeLondon/django-drf-filepond -https://github.com/HERA-Team/hera_opm -https://github.com/Dailer/RCausticMass -https://github.com/ByrumLab/proteoDA -https://github.com/Starlink/starjava -https://github.com/ComputationalRegulatoryGenomicsICL/TFBS -https://github.com/mdruett/COCOPLOT -https://github.com/ropensci/europepmc -https://github.com/mkelley/zchecker -https://github.com/NLeSC/case-law-app -https://github.com/mathworks/Simscape-Medical-Ventilator -https://github.com/gokalpcelik/ROHMMCLI -https://github.com/Cantera/cantera -https://github.com/pyspeckit/pyspeckit -https://github.com/alvinxhan/Phydelity -https://github.com/ropensci/ecoengine -https://github.com/YuSugihara/MutMap -https://github.com/octopus-sensing/octopus-sensing -https://github.com/JGCRI/osiris -https://github.com/COMBINE-lab/terminus -https://github.com/mlaparie/phidget-tools -https://github.com/bartongroup/yanosim -https://github.com/ropensci/chlorpromazineR -https://github.com/bmvdgeijn/WASP -https://github.com/ropensci/rusda -https://github.com/imcgreer/simqso -https://github.com/opencollab/arpack-ng -https://github.com/ketch/RK-Opt -https://github.com/VanLoo-lab/ascat -https://github.com/mpievolbio-scicomp/cancer_sim -https://github.com/PENTACLE-Team/PENTACLE -https://github.com/UcarLab/AMULET -https://github.com/EvolBioInf/andi -https://github.com/ImperialCollegeLondon/R2T2 -https://github.com/rohinkumar/correlcalc -https://github.com/intake/intake -https://github.com/SimonPfeifer/cows -https://github.com/astro-informatics/flag-archive -https://github.com/chemfiles/chemfiles -https://github.com/berenslab/MorphoPy -https://github.com/somefunAgba/NLSIG-COVID19Lab -https://github.com/Keck-DataReductionPipelines/KcwiDRP -https://github.com/jdonnert/WVTICs -https://github.com/masoncarney/stepped_luneburg -https://github.com/VeinsOfTheEarth/rabpro -https://github.com/RETURN-project/BenchmarkRecovery -https://github.com/jkbonfield/htscodecs -https://github.com/ropensci/internetarchive -https://github.com/SJ001/AI-Feynman -https://github.com/ropensci/coder -https://github.com/sebastian-zieba/PACMAN -https://github.com/cmateu/PyMGC3 -https://github.com/aiidateam/kiwipy -https://github.com/rajewsky-lab/novosparc -https://github.com/lwang-astro/SDAR -https://github.com/BioGenies/AMPBenchmark -https://github.com/jeremysanders/mbproj2 -https://github.com/MonashSmartStructures/ospgrillage -https://github.com/OP2/PyOP2 -https://github.com/cdalvaro/machine-learning-master-thesis -https://github.com/ggonnella/fastsubtrees -https://github.com/SharmaLlama/ticktack -https://github.com/ImperialCollegeLondon/sap-voicebox -https://github.com/ropensci/rcoreoa -https://github.com/ptiede/Comrade.jl -https://github.com/fforster/DELIGHT -https://github.com/GATB/simka -https://github.com/cicirello/rho-mu -https://github.com/Ayuei/DeBEIR -https://github.com/ArneTillmann/AuDoLab -https://github.com/RafiKueng/SpaghettiLens -https://github.com/ivastar/clear -https://github.com/kegiljarhus/pyBEMT -https://github.com/tkerscher/blast -https://github.com/PyFR/PyFR -https://github.com/DreamCloud-Project/McSim-Cycle-accurate-Xbar -https://github.com/dipol-uf/DIPOL-UF -https://github.com/lmfit/lmfit-py -https://github.com/AemulusProject/bias_emulator -https://github.com/AMReX-Combustion/PeleLMeX -https://github.com/EpistasisLab/tpot -https://github.com/tvwenger/millennium-tap-query -https://github.com/vimc/dettl -https://github.com/takfung/ResDisMapper -https://github.com/iomega/spec2vec -https://github.com/dmentipl/plonk -https://github.com/HingeAssembler/HINGE -https://github.com/PetervanLunteren/EcoAssist -https://github.com/nkallima/sim-universal-construction -https://github.com/exoclime/HELIOS -https://github.com/pelican/pelican -https://github.com/brentp/somalier -https://github.com/yqiuu/starduster -https://github.com/danielenricocahall/elephas -https://github.com/ropensci/skimr -https://github.com/ropensci/aRxiv -https://github.com/WatsonLab/MAGpy -https://github.com/ratt-ru/montblanc -https://github.com/meinardmueller/synctoolbox -https://github.com/dpthorngren/PlanetSlicer -https://github.com/ropensci/PostcodesioR -https://github.com/WelbornGroup/ELECTRIC -https://github.com/csj607/STaRS -https://github.com/sundarjhu/2-DUST -https://github.com/ropensci/spocc -https://github.com/ropensci/rglobi -https://github.com/WGLab/InterVar -https://github.com/10XGenomics/bamtofastq -https://github.com/johentsch/ms3 -https://github.com/cicirello/Chips-n-Salsa -https://github.com/user29A/CCDLAB -https://github.com/iobio-zjut/IPTDFold -https://github.com/NLeSC/structure-from-motion -https://github.com/atchekho/harmpi -https://github.com/nlesc-sherlock/Rig -https://github.com/jobovy/apogee -https://github.com/ropensci/FedData -https://github.com/hyosubkim/bayes-toolbox -https://github.com/ajohnson-uoregon/llvm-project -https://github.com/sevimcengiz/Oryx-MRSI -https://github.com/korcsmarosgroup/TFlink -https://github.com/SJaffa/Jplots -https://github.com/esa/NIDN -https://github.com/CosmoStat/Glimpse -https://github.com/dparkins/CosmoNest -https://github.com/undark-lab/albatross -https://github.com/fcastagna/JoXSZ -https://github.com/phac-nml/mob-suite -https://github.com/smirarab/sepp -https://github.com/djgroen/MPWide -https://github.com/ksahlin/strobealign -https://github.com/ModellingWebLab/chaste-codegen -https://github.com/ZJUFanLab/bulk2space -https://github.com/Nic5472K/ScientificData2021_HealthGym -https://github.com/weecology/retriever -https://github.com/ccsosa/GOCompare -https://github.com/richteague/gofish -https://github.com/bcbio/bcbio.variation.recall -https://github.com/jean-pierreBoth/gsearch -https://github.com/jbussemaker/SBArchOpt -https://github.com/ratschlab/metagraph -https://github.com/mzytnicki/srnaMapper -https://github.com/bradkav/verne -https://github.com/A-Davies/LensCNN -https://github.com/NMBU-Data-Science/RENT -https://github.com/WorkflowConversion/CTDConverter -https://github.com/natir/yacrd -https://github.com/mikessh/vdjtools -https://github.com/i-VRESSE/workflow-builder -https://github.com/ratt-ru/CubiCal -https://github.com/rikenbit/nnTensor -https://github.com/geza-kovacs/tran_k2 -https://github.com/lberaldoesilva/naif -https://github.com/BoevaLab/FREEC -https://github.com/ICRAR/ProFit -https://github.com/amerand/SPIPS -https://github.com/ishinder/EASTR -https://github.com/dgrin1/axionCAMB -https://github.com/JorenSix/Panako -https://github.com/IBMTRostock/GIFT -https://github.com/cameronliang/bayesvp -https://github.com/fmihpc/analysator -https://github.com/teuben/QAC -https://github.com/iomega/zenodo-upload -https://github.com/ropensci/landscapetools -https://github.com/dputhier/pygtftk -https://github.com/AndrewAnnex/SpiceyPy -https://github.com/jeremysanders/spex_to_xspec -https://github.com/ropensci/rWBclimate -https://github.com/BU-ISCIII/iSkyLIMS -https://github.com/dwkim78/upsilon -https://github.com/e-koch/FilFinder -https://github.com/pyBRAvo/pyBRAvo -https://github.com/BASTAcode/BASTA -https://github.com/li-shaochuan/SEDIM -https://github.com/myrafproject/myrafproject -https://github.com/sfarrens/sf_deconvolve -https://github.com/biswajitmb/DarpanX -https://github.com/NickSwainston/pulsar_spectra -https://github.com/cy-xu/cosmic-conn -https://github.com/macs3-project/MACS -https://github.com/damienmarsic/Parent-map -https://github.com/ropensci/ramlegacy -https://github.com/fermiPy/fermipy -https://github.com/morisUtokyo/uTR -https://github.com/tidymess-code/tidymess -https://github.com/amusecode/TRES -https://github.com/meenakshi-kushwaha/mmaqshiny -https://github.com/calboo/Wigglewave -https://github.com/mrc-ide/odin -https://github.com/ropensci/iheatmapr -https://github.com/aboucaud/pypher -https://github.com/eScatter/pyelsepa -https://github.com/xenon-middleware/xenon-grpc -https://github.com/debian-tex/texlive-nonbin -https://github.com/biomedia-mira/istn -https://github.com/nanoporetech/scrappie -https://github.com/torognes/vsearch -https://github.com/sibirrer/lenstronomy -https://github.com/COSMIC-PopSynth/COSMIC -https://github.com/ParaFly/ParaFly -https://github.com/ChenYangyao/hipp -https://github.com/villrv/SuperRAENN -https://github.com/sosl/H-FISTA -https://github.com/emerge-erc/ALminer -https://github.com/wdecoster/nanolyse -https://github.com/BioSTEAMDevelopmentGroup/thermosteam -https://github.com/anuradhawick/LRBinner -https://github.com/ncbi/datasets -https://github.com/mikegrudic/MakeCloud -https://github.com/bertrandplez/Turbospectrum_NLTE -https://github.com/insilicomedicine/GENTRL -https://github.com/MRCIEU/metaboprep -https://github.com/RTIP/artip -https://github.com/ahwkuepper/mcluster -https://github.com/molscat/molscat -https://github.com/arumugamlab/msamtools -https://github.com/sonjageorgievska/CClusTera -https://github.com/griffithlab/regtools -https://github.com/jeschaef/Graph4Med -https://github.com/sanger-pathogens/Bio-Tradis -https://github.com/mrirecon/bart -https://github.com/r-spatial/rgee -https://github.com/DEIB-GECO/VarSum -https://github.com/SpaceOdyssey/Blobby3D -https://github.com/creanero/locus -https://github.com/CajoterBraak/demc2 -https://github.com/nespinoza/ld-exosim -https://github.com/ropensci/magick -https://github.com/ropensci/historydata -https://github.com/PhilippJunk/homelette -https://github.com/rathnakumars/difference-smoothing -https://github.com/rust-bio/rust-bio-tools -https://github.com/XSLiuLab/Seq2Neo -https://github.com/AMReX-Astro/wdmerger -https://github.com/JetBrains-Research/spbla -https://github.com/nebblu/ReACT -https://github.com/dellytools/delly -https://github.com/ropensci/tidyhydat -https://github.com/debian-tex/biber -https://github.com/pangeo-data/climpred -https://github.com/Dfupa/meTAline -https://github.com/nliulab/HRnV-Calc -https://github.com/genner-lab/meta-fish-lib -https://github.com/xstarkit/MPI_XSTAR -https://github.com/jan-rybizki/gdr2_completeness -https://github.com/opengenomebrowser/opengenomebrowser -https://github.com/ropensci/ijtiff -https://github.com/DICP1810/ComMap -https://github.com/veg/tn93 -https://github.com/dgobbi/vtk-dicom -https://github.com/ropensci/eia -https://github.com/algo-cancer/CAMMiQ -https://github.com/tiberioap/grav_waldo -https://github.com/Jacks0nJ/PyFPT -https://github.com/USEPA/nsink -https://github.com/fmichel/TurtleKit -https://github.com/liulei/volks2 -https://github.com/muLAn-project/muLAn -https://github.com/tvwenger/hii-region-kinematics -https://github.com/comprna/SUPPA -https://github.com/patrickfuchs/buildH -https://github.com/ropensci/getlandsat -https://github.com/esandford/EightBitTransit -https://github.com/jspsych/jsPsych -https://github.com/MeasureTransport/MParT -https://github.com/dfm/ketu -https://github.com/cheginit/HyRiver -https://github.com/fjdu/rac-2d -https://github.com/dwkim78/ASTRiDE -https://github.com/CenterForMedicalGeneticsGhent/Hopla -https://github.com/Lnasellentin/DALI -https://github.com/ashleychontos/pySYD -https://github.com/SteveMacenski/slam_toolbox 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-https://github.com/online-behaviour/find-journalists -https://github.com/damar-wicaksono/uqtestfuns -https://github.com/GEUS-Glaciology-and-Climate/pypromice -https://github.com/ropensci/crul -https://github.com/DeepRank/PSSMGen -https://github.com/HannahMDoherty/ChemGAPP -https://github.com/citation-file-format/citation-file-format -https://github.com/tobiasrausch/alfred -https://github.com/richford/groupyr -https://github.com/ropensci/circle -https://github.com/mayuresh159/starsense_algorithms -https://github.com/ezer/PAFway -https://github.com/COMBINE-lab/pufferfish -https://github.com/ropensci/rplos -https://github.com/avigan/pyZELDA -https://github.com/pmelchior/des-exp-checker -https://github.com/rpetit3/fastq-scan -https://github.com/lbcb-sci/graphmap2 -https://github.com/mourisl/Lighter -https://github.com/latrop/DECA -https://github.com/winger/hawking_net -https://github.com/bwkeller/PASTA -https://github.com/linksmart/thing-directory -https://github.com/JoelForamitti/agentpy -https://github.com/shenwei356/seqkit -https://github.com/BioinfoUNIBA/REDItools2 -https://github.com/LiesaSalzer/MobilityTransformR -https://github.com/ropensci/tradestatistics -https://github.com/pcubillos/pyratbay -https://github.com/pokynmr/iPick -https://github.com/openmsi/openmsistream -https://github.com/LabTranslationalArchitectomics/riboWaltz -https://github.com/JCGonzS/mechnetor -https://github.com/CDSP-SCPO/metadata-middleware -https://github.com/devsim/devsim -https://github.com/mmollina/viewpoly -https://github.com/jpierel14/sntd -https://github.com/constantAmateur/SoupX -https://github.com/wlloyduw/ContainerProfiler -https://github.com/tcollett/LensPop -https://github.com/Kambrian/HBTplus -https://github.com/brentp/nim-lapper -https://github.com/rvalieris/parallel-fastq-dump -https://github.com/lu-yizhou/ClusterSeg -https://github.com/czbiohub/cerebra -https://github.com/zoometh/iconr -https://github.com/cmbant/getdist -https://github.com/shenwei356/csvtk -https://github.com/Keck-DataReductionPipelines/MosfireDRP -https://github.com/ZJUFanLab/scTITANS -https://github.com/cl3425/Clairvoyance -https://github.com/ImperialCollegeLondon/safedata -https://github.com/ropensci/katex -https://github.com/NRDD-constraints/NRDD -https://github.com/ropensci/cld2 -https://github.com/GabrieleParimbelli/COLIBRI -https://github.com/annajenul/UBayFS -https://github.com/pynucastro/pynucastro -https://github.com/asgr/hyper.fit -https://github.com/fredstro/hilbertmodgroup -https://github.com/ArgoCanada/argodata -https://github.com/jkbonfield/io_lib -https://github.com/matiscke/lcps -https://github.com/cusbg/traveler -https://github.com/timothydmorton/isochrones -https://github.com/rajewsky-lab/dropbead -https://github.com/DSIMB/MEDUSA -https://github.com/esplint/IRACpm -https://github.com/cylammarco/WDPhotTools -https://github.com/exoplanet-dev/celerite2 -https://github.com/jjmccollum/teiphy -https://github.com/david-barnett/microViz -https://github.com/liamedeiros/ehtplot -https://github.com/HadrienG/InSilicoSeq -https://github.com/OBrink/RanDepict -https://github.com/kdeck/TTVFast -https://github.com/neeravkaushal/RIDs-in-WCDs -https://github.com/mtlam/PyPulse -https://github.com/lijing28101/maize_pyrpipe -https://github.com/GalSim-developers/GalSim -https://github.com/bhi-kimlab/StressGenePred -https://github.com/venkateshgopinath/FAlCon-DNS -https://github.com/3D-e-Chem/3D-e-Chem-VM -https://github.com/basp-group/purify -https://github.com/SSDataLab/vetting -https://github.com/vishwas1984/LaplaceInterpolation.jl -https://github.com/galaxy001/pirs -https://github.com/jet-net/JetNet -https://github.com/eltevo/StePS -https://github.com/barnesgroupICL/Driftfusion -https://github.com/ropensci/mregions -https://github.com/cusbg/MolArt -https://github.com/arnikz/PIQMIe -https://github.com/biolab/orange3-network -https://github.com/oliverphilcox/HADES -https://github.com/aprsa/ebai -https://github.com/lsds/LightSaber -https://github.com/zhangjunpeng411/Scan -https://github.com/hpparvi/MuSCAT2_transit_pipeline -https://github.com/devitocodes/devito -https://github.com/zpenoyre/CausticFrog -https://github.com/MASILab/pyPheWAS -https://github.com/Starlink/hds-v5 -https://github.com/danielreardon/scintools -https://github.com/DataIntellSystLab/KARGA -https://github.com/fraserw/trippy -https://github.com/SouthGreenPlatform/PyRice -https://github.com/stammler/dustpy -https://github.com/NREL/G2Aero -https://github.com/erling6232/imagedata -https://github.com/STOmics/EAGS -https://github.com/Balaje/iceFem -https://github.com/tofflemire/saphires -https://github.com/cbg-ethz/V-pipe -https://github.com/yuhaoran/CUBE -https://github.com/barbagroup/geoclaw-landspill -https://github.com/abacusorg/zeldovich-PLT -https://github.com/rmaphoh/AutoMorph -https://github.com/calboo/TAWAS -https://github.com/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection -https://github.com/ropensci/censo2017 -https://github.com/ropensci/cyphr -https://github.com/ropensci/rfigshare -https://github.com/LindleyLentati/Cobra -https://github.com/dingyaozhang/Evitar -https://github.com/BritishGeologicalSurvey/pyvolcans -https://github.com/fzagaria/COpops -https://github.com/ropensci/outcomerate -https://github.com/BU-ISCIII/plasmidID -https://github.com/gkulkarni/QLF -https://github.com/saopicc/killMS -https://github.com/ropensci/pangaear -https://github.com/evanoconnor/GR1D -https://github.com/mishioo/tesliper -https://github.com/chainsawriot/oolong -https://github.com/kbarbary/sep -https://github.com/jts/sga -https://github.com/ylxu05/HN-PPISP -https://github.com/ComparativeGenomicsToolkit/cactus -https://github.com/JuliaMatrices/BandedMatrices.jl -https://github.com/baiwenjia/ukbb_cardiac -https://github.com/GRChombo/GRChombo -https://github.com/KVSlab/VaMPy -https://github.com/auckland-cosmo/PyUltraLight -https://github.com/exosports/HOMER -https://github.com/GaryBAYLOR/mixR -https://github.com/xiaotiand/FunFor -https://github.com/hannorein/rebound -https://github.com/smirarab/pasta -https://github.com/JGCRI/ambrosia -https://github.com/Alcampopiano/hypothesize -https://github.com/davidgardenier/frbcat -https://github.com/sdrastro/NWelch -https://github.com/radio1988/OneStopRNAseq -https://github.com/3D-e-Chem/knime-plants -https://github.com/benstahl92/deepSIP -https://github.com/sorenwacker/ProteomicsQC -https://github.com/ltlancas/walter -https://github.com/exoplanet-dev/exoplanet -https://github.com/parklab/SCAN2 -https://github.com/r-lib/gert -https://github.com/DLR-RM/BlenderProc -https://github.com/bcgsc/arcs -https://github.com/DEIB-GECO/OpenGDC -https://github.com/marieBvr/virAnnot -https://github.com/girder/viime -https://github.com/hippke/PyOSE -https://github.com/surhudm/aum -https://github.com/gorpipe/gor -https://github.com/SuLab/Wikidata-phenomizer -https://github.com/CosmoTool/ECLIPSE -https://github.com/phenomecentre/nPYc-Toolbox -https://github.com/LSSTDESC/WeakLensingDeblending -https://github.com/stevengiacalone/triceratops -https://github.com/jbytecode/JMcDM -https://github.com/cbg-ethz/PredictHaplo -https://github.com/astrosmili/smili -https://github.com/elsner/arkcos -https://github.com/JixingGE/GGCHEMPY -https://github.com/Lyalpha/spalipy -https://github.com/ropensci/USAboundariesData -https://github.com/the-rccg/hw2d -https://github.com/rajeshmondal18/MAPS -https://github.com/musevlt/origin -https://github.com/JFFleming/RCFV_Reader -https://github.com/arcaldwell49/SimplyAgree -https://github.com/zhongqiu1245/CCS-Net -https://github.com/ryokbys/nap -https://github.com/kbarbary/extinction -https://github.com/c-martinez/BeyondTheBook -https://github.com/PacificBiosciences/bam2fastx -https://github.com/NctuICLab/PredCRP -https://github.com/temken/DaMaSCUS -https://github.com/NLeSC/pycoeman -https://github.com/srdc/onfhir -https://github.com/regonzar/paravt -https://github.com/PabloVD/CosmoGraphNet -https://github.com/Music-and-Culture-Technology-Lab/omnizart -https://github.com/davtsang/slimplectic -https://github.com/rikenbit/dcTensor -https://github.com/grburgess/ronswanson -https://github.com/ckm3/Py-PDM -https://github.com/edgardomortiz/Captus -https://github.com/ryneches/SuchTree -https://github.com/fatmasevinck/enetLTS -https://github.com/umbramortem/nProFit -https://github.com/nf-core/sarek -https://github.com/polca/unfold -https://github.com/ropensci/brranching -https://github.com/ryanhausen/fitsmap -https://github.com/lnscan/mitoSplitter -https://github.com/i-VRESSE/pdbtbx-ts -https://github.com/ropensci/patentsview -https://github.com/ropensci/rAvis -https://github.com/toros-astro/corral -https://github.com/daiqile96/OTTERS_paper -https://github.com/mofanv/darknetz -https://github.com/mariogrs/Simfast21 -https://github.com/waynebhayes/SpArcFiRe -https://github.com/NNSSA/GALLUMI_public -https://github.com/biocore-ntnu/ncls -https://github.com/PEREGRINE-GW/peregrine -https://github.com/nivha/three_body_integration -https://github.com/mlinderm/npsv -https://github.com/narunlifescience/runcircos-gui -https://github.com/grant-m-s/AstronomicAL -https://github.com/mwhosek/extlaw_H18 -https://github.com/tpospisi/cdetools -https://github.com/UM-Bridge/umbridge -https://github.com/jessecambon/tidygeocoder -https://github.com/WGLab/LongGF -https://github.com/tessgi/tvguide -https://github.com/pyamg/pyamg -https://github.com/rychallener/theresa -https://github.com/riatelab/osrm -https://github.com/rabix/cwl-format -https://github.com/teuben/DataComb -https://github.com/ugovaretto/molekel -https://github.com/segasai/rvspecfit -https://github.com/itpplasma/GORILLA -https://github.com/ropensci/nodbi -https://github.com/AMSSwanglab/SpecVar -https://github.com/yangao07/abPOA -https://github.com/OSU-BMBL/IDAM -https://github.com/williamjameshandley/fgivenx -https://github.com/Leo-Simpson/c-lasso -https://github.com/ropensci/MtreeRing -https://github.com/deepsphere/deepsphere-cosmo-tf1 -https://github.com/antoinemarchal/ROHSA -https://github.com/ImperialCollegeLondon/champ -https://github.com/benedictpaten/marginPhase -https://github.com/gotsunami/Youpi -https://github.com/pratheesh3780/grapesAgri1 -https://github.com/pcubillos/repack -https://github.com/NREL/OpenOA -https://github.com/prajwel/curvit -https://github.com/osallou/cassiopee-c -https://github.com/vgteam/vg -https://github.com/mrc-ide/dde -https://github.com/pontoppi/radlite -https://github.com/thomasorb/orcs -https://github.com/spectralcode/OCTproZ -https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener -https://github.com/xpsi-group/xpsi -https://github.com/rmjarvis/TreeCorr -https://github.com/EvolBioInf/phylonium -https://github.com/moble/scri -https://github.com/sambit-giri/tools21cm -https://github.com/e-mental-health/data-processing -https://github.com/daler/pybedtools -https://github.com/tseemann/mlst -https://github.com/DreamCloud-Project/AMALTHEA-Microworkload-Generator -https://github.com/shergreen/SatGen -https://github.com/mrc-ide/provisionr -https://github.com/PfizerRD/sit2standpy -https://github.com/thegenemyers/DAMAPPER -https://github.com/tommyau/bamclipper -https://github.com/zarr-developers/zarr-python -https://github.com/Gabaldonlab/crossmapper -https://github.com/rksyouyou/SASOM-analysis -https://github.com/matchms/ms2deepscore -https://github.com/jstuecker/adiabatic-tides -https://github.com/andreasmang/claire -https://github.com/coccoinomane/song -https://github.com/TommasoRonconi/scampy -https://github.com/johnveitch/cpnest -https://github.com/genouest/biomaj-cli -https://github.com/rossjturner/RAiSERed -https://github.com/yangfangs/KPP -https://github.com/SarveshVGharat/Plages-Identification -https://github.com/ropensci/chromer -https://github.com/Xomics/ACTIONdemonstrator_workflow -https://github.com/shenwei356/kmcp -https://github.com/gogetdata/ggd-utils -https://github.com/brentp/kexpr-nim -https://github.com/Mat-dp/mat-dp-core -https://github.com/yiwenstat/MCPCA_PopGen -https://github.com/ropensci/charlatan -https://github.com/pymatting/pymatting -https://github.com/jah1994/PyTorchDIA -https://github.com/aakepley/autobox -https://github.com/cwinpy/cwinpy -https://github.com/Glogobyte/miRGalaxy -https://github.com/tud-hri/joan -https://github.com/leonzheng2/efficient-butterfly -https://github.com/umbralcalc/foxi -https://github.com/trevisanj/PFANT -https://github.com/pierrexyz/pybird -https://github.com/amkozlov/raxml-ng -https://github.com/seqan/flexbar -https://github.com/cespinosa/pyHIIexplorerV2 -https://github.com/seeh/surprise -https://github.com/iric-soft/km -https://github.com/ants-project/ANTs -https://github.com/ropensci/skynet -https://github.com/alexander-mead/pyhalomodel -https://github.com/xenon-middleware/osmium -https://github.com/ropensci/seasl -https://github.com/ropensci/workloopR -https://github.com/sanger-pathogens/Roary -https://github.com/dawolfgang/MRrelation -https://github.com/ropensci/taxizedb -https://github.com/chhylp123/hifiasm -https://github.com/ComtekAdvancedStructures/cmstatr -https://github.com/sPaMFouR/RedPipe -https://github.com/MichaelCretignier/Rassine_public -https://github.com/ropensci/rvertnet -https://github.com/bpairet/mayo_hci -https://github.com/ropensci/exoplanets -https://github.com/tatekawa-astron/3LPT-init -https://github.com/imperialchem/mrd-demo -https://github.com/biomedia-mira/drop2 -https://github.com/potree/PotreeConverter -https://github.com/dmey/synthia -https://github.com/PabloVD/HAYASHI -https://github.com/peikuan/WBBC -https://github.com/ycwu1030/EvoEMD -https://github.com/GATB/gatb-core -https://github.com/PrincetonUniversity/FastTemplatePeriodogram -https://github.com/tool-bin/ukbcc -https://github.com/fjprichard/PyAFBF -https://github.com/CederGroupHub/sparse-lm -https://github.com/jmsdsouzaPhD/GWDALI -https://github.com/hippke/tls -https://github.com/kutaslab/fitgrid -https://github.com/minaskar/zeus -https://github.com/BackofenLab/StoatyDive -https://github.com/LCOGT/neoexchange -https://github.com/ERA-URBAN/netcdf2littler -https://github.com/chianti-atomic/ChiantiPy -https://github.com/conchoecia/pauvre -https://github.com/akleroy/phangs_imaging_scripts -https://github.com/simonsobs/so_noise_models -https://github.com/travisseymour/EPICpy -https://github.com/scottgigante/picopore -https://github.com/amiralih/MembraneAnalysis.jl -https://github.com/arnauqb/qwind -https://github.com/lastz/lastz -https://github.com/kuenzelab/ENDURE -https://github.com/Illumina/canvas -https://github.com/samuelefiorini/tangle -https://github.com/schochastics/signnet -https://github.com/tlverse/hal9001 -https://github.com/vidakris/flatwrm -https://github.com/amerand/CANDID -https://github.com/Samreay/ChainConsumer -https://github.com/kd0kfo/cosmology -https://github.com/stermzsofi/TiDE -https://github.com/vocalpy/crowsetta -https://github.com/HERA-Team/librarian -https://github.com/mjacob1002/Eir -https://github.com/SwiftVISA/SwiftVISASwift -https://github.com/ropensci/rdryad -https://github.com/nboley/idr -https://github.com/tmcclintock/cluster_toolkit -https://github.com/gui11aume/starcode -https://github.com/gbernstein/pixmappy -https://github.com/FireflySpectra/firefly_release -https://github.com/nathanchara/l1periodogram -https://github.com/ropensci/solrium -https://github.com/vipinagrawal25/MeMC -https://github.com/smog-server/OpenSMOG -https://github.com/mostanes/umbrella2 -https://github.com/frank1010111/bluebonnet -https://github.com/basp-group/sopt -https://github.com/vmmunoza/nuHawkHunter -https://github.com/nlesc-nano/ceiba-cli -https://github.com/ajshajib/dolphin -https://github.com/mc-imperial/gpuverify -https://github.com/duffell/RT1D -https://github.com/horovod/horovod -https://github.com/yymao/abundancematching -https://github.com/ropensci/DoOR.data -https://github.com/TheMillerLab/genetex -https://github.com/mbejger/polgraw-allsky -https://github.com/sinc-lab/miRe2e -https://github.com/ropensci/vcr -https://github.com/francescoa97outlook/pyExoRaMa -https://github.com/yatisht/usher -https://github.com/rajeshmondal18/DviSukta -https://github.com/EdanRein/pyPplusS -https://github.com/sibirrer/psfr -https://github.com/brainglobe/bg-atlasapi -https://github.com/Effective-Quadratures/Effective-Quadratures -https://github.com/oliverphilcox/encore -https://github.com/ropensci/cde -https://github.com/ropensci/gittargets -https://github.com/Washington-University/CiftiLib -https://github.com/spacetelescope/stsdas_stripped -https://github.com/cytham/nanovar -https://github.com/cb-geo/mpm -https://github.com/ropensci/MODISTools -https://github.com/icecube/FIRESONG -https://github.com/Yash-10/beta-sgp -https://github.com/tobiasrausch/lorax -https://github.com/max0x7ba/atomic_queue -https://github.com/pkgw/pwkit -https://github.com/statgen/Minimac4 -https://github.com/Julian/jsonschema -https://github.com/davemlz/eemont -https://github.com/ncbi/sra-tools -https://github.com/philres/catfishq -https://github.com/Kaixhin/spinning-up-basic -https://github.com/AshleySpindler/AstroVaDEr-Public -https://github.com/swiftbiosciences/primerclip -https://github.com/drwaseemsheikh/audiometry -https://github.com/JEFworks-Lab/STdeconvolve -https://github.com/mrc-ide/squire -https://github.com/fair-workflows/NanopubJL -https://github.com/JiangYuTS/FacetClumps -https://github.com/aabdurrouf/piXedfit -https://github.com/zpliulab/GENELink -https://github.com/rhyspoulton/WhereWolf -https://github.com/mrc-ide/ring -https://github.com/pavanvidem/chira -https://github.com/NLeSC/scriptcwl -https://github.com/mrc-ide/PhyDyn -https://github.com/ropensci/jagstargets -https://github.com/jobovy/streamgap-pepper -https://github.com/NLeSC/xtas -https://github.com/broadinstitute/picard -https://github.com/astropy/astroplan 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-https://github.com/mtazzari/galario -https://github.com/ledatelescope/bifrost -https://github.com/nf-core/mag -https://github.com/occupationMeasurement/occupationMeasurement -https://github.com/KULL-Centre/DEERpredict -https://github.com/B-UMMI/chewBBACA -https://github.com/sarrvesh/cuFFS -https://github.com/ORNL/curifactory -https://github.com/temken/DaMaSCUS-SUN -https://github.com/PACurran/MCSpearman -https://github.com/Bgi-LUSH/GPMeta -https://github.com/kkrismer/scansite-tools -https://github.com/UCBerkeleySETI/blimpy -https://github.com/FCS-analysis/PyCorrFit -https://github.com/Oftatkofta/cellocity -https://github.com/FiorenSt/AutoSourceID-Light -https://github.com/3D-e-Chem/knime-sygma -https://github.com/jobovy/stream-stream -https://github.com/flekschas/regl-scatterplot -https://github.com/hippke/Pandora -https://github.com/solerjuan/astroHOG -https://github.com/Heldenkombinat/Logodetect -https://github.com/fchuffar/dmethr -https://github.com/nasa/KeplerPORTs 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-https://github.com/MichelleLochner/astronomaly -https://github.com/biomedia-mira/deepscm -https://github.com/YesselmanLab/rna_map -https://github.com/Mulan-94/smops -https://github.com/HCGB-IGTP/spaTyper -https://github.com/egonw/bacting -https://github.com/tseemann/samclip -https://github.com/ropensci/targets -https://github.com/hveerten/boxfit -https://github.com/cdw9bf/CompactGroup -https://github.com/astroboylrx/Rubble -https://github.com/delphes/delphes -https://github.com/ropensci/cleanEHR -https://github.com/FofanovLab/mtsv_tools -https://github.com/ropensci/hddtools -https://github.com/oliverphilcox/PolyBin -https://github.com/ropensci-org/rotemplate -https://github.com/cheng-zhao/FCFC -https://github.com/aomlomics/tourmaline -https://github.com/ropensci/tacmagic -https://github.com/gmzsebastian/FLEET -https://github.com/ELELAB/cancermuts -https://github.com/henrikdvn/CRSocket -https://github.com/ropensci/NLMR -https://github.com/ropensci/rebird -https://github.com/astro-informatics/s2let -https://github.com/ropensci/mctq -https://github.com/kendomaniac/docker4seq -https://github.com/catherinezucker/radfil -https://github.com/nlesc-nano/ceiba -https://github.com/fhaghighi/TransVW -https://github.com/aschafu/PSSH2 -https://github.com/KathrynJones1/catwoman -https://github.com/LuisScoccola/persistable -https://github.com/FluidityProject/fluidity -https://github.com/vwesselkamp/ernie-extension -https://github.com/ZhaoXM-Lab/metaMIC -https://github.com/ladsantos/p-winds -https://github.com/danhey/maelstrom -https://github.com/gpertea/cdbfasta -https://github.com/virus-evolution/gofasta -https://github.com/zclaytor/kiauhoku -https://github.com/lsds/Neptune -https://github.com/NuGrid/NuPyCEE -https://github.com/Adamtaranto/Yanagiba -https://github.com/rambaut/jebl2 -https://github.com/wpb-astro/MCSED -https://github.com/clawpack/clawpack -https://github.com/gxiaolab/scAllele -https://github.com/metageni/FOCUS -https://github.com/pkugyf/MST -https://github.com/dartoon/galight -https://github.com/eXtremeGravityInstitute/LISA-Massive-Black-Hole -https://github.com/eWaterCycle/grpc4bmi -https://github.com/pyomeca/ezc3d -https://github.com/Ashod/garli -https://github.com/michaeltouati/ESVM -https://github.com/YangLab/CIRCexplorer2 -https://github.com/deeptools/py2bit -https://github.com/eelregit/mcfit -https://github.com/JuliaArrays/LazyArrays.jl -https://github.com/aalhossary/pyemgpipeline -https://github.com/daniellefenech/SERPent -https://github.com/csdms/bmi -https://github.com/damonge/CUTE -https://github.com/Yingjie4Science/SDGdetector -https://github.com/cas-bioinf/rboAnalyzer -https://github.com/pfaucon/PBSIM-PacBio-Simulator -https://github.com/nanoporetech/dorado -https://github.com/maickrau/MBG -https://github.com/jdhenshaw/acorns -https://github.com/jradcliffe5/multi_self_cal -https://github.com/barklem/hlinop -https://github.com/BU-ISCIII/taranis -https://github.com/statOmics/tradeSeqPaper -https://github.com/ixkael/3DEX -https://github.com/mmore500/hstrat -https://github.com/labsquare/CutePeaks -https://github.com/mwalmsley/zoobot -https://github.com/genostats/LowKi -https://github.com/alawryaguila/multi-view-AE -https://github.com/Social-Evolution-and-Behavior/anTraX -https://github.com/jharno/cubep3m -https://github.com/GenomiqueENS/toulligQC -https://github.com/GENtle-persons/gentle-m -https://github.com/IanHeywood/oxkat -https://github.com/elixir-luxembourg/daisy -https://github.com/AusSRC/SoFiAX -https://github.com/bcgov/shinyssdtools -https://github.com/ropensci/rbhl -https://github.com/fhcrc/seqmagick -https://github.com/sebastien-plutniak/archeoviz -https://github.com/iancze/DiskJockey -https://github.com/HalHaggard/EARL -https://github.com/ropensci/c14bazAAR -https://github.com/Samreay/Marz -https://github.com/big-data-lab-team/spot -https://github.com/mivp/encube -https://github.com/taxprofiler/taxpasta -https://github.com/NLeSC/ShiCo -https://github.com/iancze/PSOAP -https://github.com/devries/analytic_infall -https://github.com/winni2k/abeona -https://github.com/gmbrandt/xwavecal -https://github.com/Smith42/astroddpm -https://github.com/danxhuber/evolstate -https://github.com/aconley/mbb_emcee -https://github.com/volkamerlab/opencadd -https://github.com/gymreklab/chips -https://github.com/grazianoucci/game -https://github.com/AndreinaCastillo/Genie_manuscript_data_analysis -https://github.com/phil-mansfield/gotetra -https://github.com/tyo-nu/MINE-app -https://github.com/KeplerGO/k2mosaic -https://github.com/kuadrat/data-slicer -https://github.com/FEniCS/ffcx -https://github.com/arhstevens/DarkSage -https://github.com/galtay/sphray -https://github.com/ropensci/sofa -https://github.com/rajeshmondal18/FoF-Halo-finder -https://github.com/trygvrad/DF-XRM_viz -https://github.com/Starlink/perl-Starlink-Autoastrom -https://github.com/ImperialCollegeLondon/magda_tools 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-https://github.com/jpmens/jo -https://github.com/ajosephy/Clustering -https://github.com/JulianBMunoz/RelicFast -https://github.com/ropensci/baRcodeR -https://github.com/Kaixhin/dockerfiles -https://github.com/genotoul-bioinfo/dgenies -https://github.com/DirectDM/directdm-mma -https://github.com/FlorianThibord/OptimiR -https://github.com/husonlab/jloda -https://github.com/Kkritos/Rapster -https://github.com/JoschaJ/mockFRBhosts -https://github.com/raghuastro/GRIZZLY -https://github.com/BioMeCIS-Lab/OpenOmics -https://github.com/lsds/SEEP -https://github.com/BogdanCiambur/PROFILER -https://github.com/eWaterCycle/era5cli -https://github.com/BGPS/distance-omnibus -https://github.com/Li-Yangyang/LOTUS -https://github.com/GalacticDynamics-Oxford/Agama -https://github.com/joergbuchwald/joss_ogs6py_VTUinterface -https://github.com/anuwu/GOTHIC -https://github.com/tramarobin/fctSnPM -https://github.com/kylemede/ExoSOFT -https://github.com/NSAPH-Software/CRE 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-https://github.com/PaulMcMillan-Astro/Torus -https://github.com/Yomguithereal/talisman -https://github.com/linnarsson-lab/loompy -https://github.com/segasai/q3c -https://github.com/ropensci/assertr -https://github.com/JelfsMaterialsGroup/stk -https://github.com/CosmoStat/score -https://github.com/tobias-dv-lnu/s4rdm3x -https://github.com/mlaparie/sigh -https://github.com/wanpinglee/MOSAIK -https://github.com/aasensio/sicon -https://github.com/ParBLiSS/FastANI -https://github.com/COMBINE-lab/simpleaf -https://github.com/felixchenier/kineticstoolkit -https://github.com/vmplacco/linemake -https://github.com/mbursa/disk-models -https://github.com/AlexanderBartholomaeus/smORFer -https://github.com/wdecoster/nanoget -https://github.com/hydrosolutions/riversCentralAsia -https://github.com/webbjj/clustertools -https://github.com/HUST-NingKang-Lab/ONN4MST -https://github.com/fmihpc/vlasiator -https://github.com/zblz/naima -https://github.com/bwa-mem2/bwa-mem2 -https://github.com/mjuric/galfast -https://github.com/torluca/morphofit -https://github.com/abs-tudelft/variant-calling-at-scale -https://github.com/wtsi-hpag/HiLine -https://github.com/cns-iu/HRA-supporting-information -https://github.com/NLeSC/python-pcl -https://github.com/wdecoster/chopper -https://github.com/davidkipping/flicker -https://github.com/chasmani/piecewise-regression -https://github.com/mes5k/amap-align -https://github.com/SNEWS2/snewpy -https://github.com/pydemull/activAnalyzer -https://github.com/landlab/landlab -https://github.com/siriobelli/flame -https://github.com/spacetelescope/imexam -https://github.com/nicolet5/DiffCapAnalyzer -https://github.com/surhudm/savitzky_golay_with_errors -https://github.com/mlipatov/paint_atmospheres -https://github.com/hombit/freddi -https://github.com/nwchemgit/nwchem -https://github.com/erikhom/aida -https://github.com/datngu/Circall -https://github.com/ropensci/rotl -https://github.com/TianlaiProject/tlpipe -https://github.com/tvwenger/HII-Region-Models 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-https://github.com/pennucci/PulsePortraiture -https://github.com/Dulab2020/ARMT -https://github.com/nlesc-sherlock/emma -https://github.com/mscroggs/symfem -https://github.com/captain-exoplanet/misttborn -https://github.com/ropensci/addressable -https://github.com/xenon-middleware/pyxenon -https://github.com/hemanthpruthvi/PyAstroPol -https://github.com/pyFFTW/pyFFTW -https://github.com/cma2015/iwa-miRNA -https://github.com/ropensci/opencage -https://github.com/ropensci/rcitoid -https://github.com/brentp/gsort -https://github.com/hope-data-science/tidyfst -https://github.com/SciLifeLab/TIDDIT -https://github.com/Rohit-Kundu/ET-NET_Covid-Detection -https://github.com/ericsteinbring/World_Observatory -https://github.com/lsds/sgx-lkl -https://github.com/Single-Cell-Graph-Learning/scSGL -https://github.com/multiwavelength/gleam -https://github.com/Qiskit-Extensions/qiskit-dynamics -https://github.com/sheneman/clearcut -https://github.com/FabioRigamonti/BANG -https://github.com/yfperezg/frisbhee -https://github.com/astronomyk/SimCADO -https://github.com/mtsch/Ripserer.jl -https://github.com/raphael-group/hatchet -https://github.com/nonlocalmodels/NLMech -https://github.com/eEcoLiDAR/laserchicken -https://github.com/lh3/seqtk -https://github.com/PacificBiosciences/pbmm2 -https://github.com/KeplerGO/K2fov -https://github.com/BU-hammerTeam/PyHammer -https://github.com/NLESC-JCER/Fortran_Davidson -https://github.com/bwengals/ccsnmultivar -https://github.com/jveitchmichaelis/pygadgetreader -https://github.com/ropensci/bibtex -https://github.com/andresGranadosC/GalRotpy -https://github.com/santeripuranen/SpydrPick -https://github.com/ropensci/rnpn -https://github.com/vembrane/vembrane -https://github.com/wdecoster/nanomath -https://github.com/aksholokhov/pysr3 -https://github.com/ropensci/jqr -https://github.com/nanograv/PINT -https://github.com/TNEL-UCSD/autolfads-deploy -https://github.com/ropensci/paleobioDB -https://github.com/biomed-AI/GraphBepi -https://github.com/zooniverse/starpy -https://github.com/rhysf/HaplotypeTools -https://github.com/xfangcosmo/2DFFTLog -https://github.com/CrowdTruth/CrowdTruth -https://github.com/mrc-ide/dust -https://github.com/CornellLabofOrnithology/auk -https://github.com/putonti/virMine -https://github.com/PedroBarbosa/VETA -https://github.com/soylentdeen/MoogStokes -https://github.com/Sydney-Informatics-Hub/OmixLitMiner -https://github.com/Chandra-MARX/marxs -https://github.com/dylancromer/maszcal -https://github.com/ropensci/cld3 -https://github.com/ropensci/rAltmetric -https://github.com/relipmoc/skewer -https://github.com/maxmahlke/ssos -https://github.com/soichiro-hattori/unpopular -https://github.com/barentsen/dave -https://github.com/MRCIEU/PHESANT -https://github.com/binzhulab/SUITOR -https://github.com/eWaterCycle/Cesium-NcWMS -https://github.com/ropensci/DataPackageR -https://github.com/eweitz/ideogram -https://github.com/ropensci-archive/arresteddev -https://github.com/kmsurrao/reMASTERed -https://github.com/tidymodels/infer -https://github.com/pawni/BayesByHypernet -https://github.com/mentatpsi/OSGenome -https://github.com/exosports/transit -https://github.com/niceume/datasailr -https://github.com/odb9402/CNNPeaks -https://github.com/luntergroup/octopus -https://github.com/APGG-Lab/APGG -https://github.com/mne-tools/mne-python -https://github.com/fzi-forschungszentrum-informatik/TSInterpret -https://github.com/scottleedavis/google-earth-toolbox -https://github.com/stammler/simframe -https://github.com/WMD-group/hybrid-perovskites -https://github.com/jamesrhester/Lerche.jl -https://github.com/MikeSWang/Triumvirate -https://github.com/ropensci/osfr -https://github.com/broadinstitute/CellBender -https://github.com/jonzink/EDI-Vetter -https://github.com/odlomax/spamcart-dev -https://github.com/ropensci/tesseract -https://github.com/hmtabernero/SteParSyn -https://github.com/jlenain/flaapluc -https://github.com/marius311/cosmoslik -https://github.com/leonzheng2/butterfly -https://github.com/Samreay/Barry -https://github.com/MCTwo/MCMAC -https://github.com/micahvista/MAMnet -https://github.com/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022 -https://github.com/bccp/nbodykit -https://github.com/cbalbin-bio/Epitopedia -https://github.com/legacysurvey/unwise_psf -https://github.com/CouncilDataProject/cookiecutter-cdp-deployment -https://github.com/adriancorrendo/metrica -https://github.com/NeotomaDB/neotoma2 -https://github.com/christopher-vollmers/C3POa -https://github.com/teuben/nemo -https://github.com/webbjj/m2mcluster -https://github.com/annehutter/astraeus -https://github.com/TingMAC/FrMLNet -https://github.com/jvc2688/K2-CPM -https://github.com/andresmegias/radex-python -https://github.com/vallis/mc3pta -https://github.com/nextflow-io/nextflow -https://github.com/astrom-tom/dfitspy -https://github.com/orbisgis/lczexplore -https://github.com/fastpm/fastpm -https://github.com/drupke/ifsfit -https://github.com/adamgayoso/totalVI_reproducibility -https://github.com/davidkipping/inversebeta -https://github.com/EACcodes/TigerCI -https://github.com/yyZhang14/dbEssLnc -https://github.com/danhey/echelle -https://github.com/sibirrer/hierArc -https://github.com/darioizzo/dcgp -https://github.com/synchrofit/synchrofit -https://github.com/robdjeff/eagles -https://github.com/jodyphelan/tb-ml -https://github.com/bethgelab/foolbox -https://github.com/MegaMorph/galapagos-c -https://github.com/keflavich/HiGal_SEDfitter -https://github.com/PyFstat/PyFstat -https://github.com/amkram/shusher -https://github.com/BoPeng/simuPOP -https://github.com/mikaelLEROY/AxionNS_RayTracing -https://github.com/mlarichardson/ramses2hsim -https://github.com/freelawproject/eyecite -https://github.com/lwang-astro/PeTar -https://github.com/ropensci/pendulum -https://github.com/Varnani/pywd2015-qt5 -https://github.com/damonge/CoLoRe -https://github.com/shilpagarg/WHdenovo -https://github.com/ropensci/handlr -https://github.com/jfalconbarroso/BAYES-LOSVD -https://github.com/UFParLab/aces4 -https://github.com/DeepMIALab/UC-NfNet -https://github.com/KeplerGO/kadenza -https://github.com/malonge/RagTag -https://github.com/freebayes/freebayes -https://github.com/ropensci/opencontext -https://github.com/mr-superonion/FPFS -https://github.com/Kingsford-Group/scallop -https://github.com/tomlouden/SPIDERMAN -https://github.com/jfoster17/extinction-distances -https://github.com/hover2pi/sedkit -https://github.com/yogi-tud/space_gpu -https://github.com/yuansh3354/CaSee -https://github.com/metagentools/GraphBin -https://github.com/nvalimak/fsm-lite -https://github.com/cedrus-opensource/pyxid -https://github.com/bradkav/AntiparticleDM -https://github.com/sjteresi/TE_Density -https://github.com/bwoshea/ZEUS-MP_2 -https://github.com/CisnerosResearch/LICHEM -https://github.com/nithyanandan/PRISim -https://github.com/mgieles/limepy -https://github.com/AnitaPetzler/AMOEBA -https://github.com/s-abbas/robnptests -https://github.com/ropensci/wikitaxa -https://github.com/pypeit/PypeIt -https://github.com/lsds/KungFu -https://github.com/fgbuster/fgbuster -https://github.com/NREL/graph-env -https://github.com/NLeSC/esibayes -https://github.com/ouyang-lab/PRAS -https://github.com/jtschindler/sculptor -https://github.com/WMD-group/SMACT -https://github.com/bionlplab/GlaucomaNet -https://github.com/GOVS-pack/GOVS -https://github.com/bbuchfink/diamond -https://github.com/scotthgn/RELAGN -https://github.com/skiehl/wwz -https://github.com/YangLab/RNAlight -https://github.com/GooglingTheCancerGenome/sv-channels -https://github.com/pavolgaj/ObsPlanner -https://github.com/neuralgraphs/diman -https://github.com/AgentM-GEG/residual_feature_extraction -https://github.com/fabiopardo/qmap -https://github.com/JLSteenwyk/ggpubfigs -https://github.com/FergusDonnan/Running-Optimal-Average -https://github.com/hasindu2008/slow5tools -https://github.com/caselawanalytics/CaseLawAnalytics -https://github.com/ratt-ru/Stimela -https://github.com/rzellem/EXOTIC -https://github.com/nanoporetech/medaka -https://github.com/widdowquinn/pyani -https://github.com/arq5x/poretools -https://github.com/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark -https://github.com/CGATOxford/UMI-tools -https://github.com/spacetelescope/stsynphot_refactor -https://github.com/TeamLEGWORK/LEGWORK -https://github.com/heliopython/heliopy -https://github.com/TimothyADavis/KinMSpy -https://github.com/holmescao/ANTS_marking_and_analysis_tools -https://github.com/MIC-DKFZ/TractSeg -https://github.com/villano-lab/nrCascadeSim -https://github.com/bartongroup/RoSA -https://github.com/astronomical-data-processing/RAPP -https://github.com/eXtremeGravityInstitute/QuickCBC -https://github.com/zhanglabtools/CASAVA -https://github.com/PynPoint/PynPoint -https://github.com/JungleComputing/rocket -https://github.com/atakan/KeplerSolver -https://github.com/laurazara/IgIDivA -https://github.com/ropensci-org/roblog -https://github.com/alastair-droop/fqtools -https://github.com/paumard/cubefit -https://github.com/palaeoware/revosim -https://github.com/basp-group/Puri-Psi -https://github.com/elkebir-group/Jumper -https://github.com/josegit88/SCORPIO -https://github.com/spacetelescope/synphot_refactor -https://github.com/valentineap/pyprop8 -https://github.com/FunctionalUrology/MLcps -https://github.com/ImperialCollegeLondon/rcs_cluster_scripts -https://github.com/icbm-iupui/STAFF -https://github.com/hcdenbakker/sepia -https://github.com/snad-space/coniferest -https://github.com/spyder-ide/spyder -https://github.com/lucianolorenti/ceruleo -https://github.com/wjakethompson/measr -https://github.com/bwinkel/cygrid -https://github.com/thomasdenecker/START-R -https://github.com/mommermi/photometrypipeline -https://github.com/discsim/frank -https://github.com/pedro-acunha/SHEEP -https://github.com/Martindelosrios/MeSsI -https://github.com/bxlab/bx-python -https://github.com/kibokov/GRUMPY -https://github.com/interactivereport/OmicsView0 -https://github.com/ropensci/textreuse -https://github.com/wiederm/transformato -https://github.com/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY -https://github.com/3D-e-Chem/sygma -https://github.com/Johannes-Sahlmann/pygacs -https://github.com/brandonckelly/carma_pack -https://github.com/NiallJeffrey/DeepMass -https://github.com/amoradinejad/limHaloPT -https://github.com/spacetelescope/jdaviz -https://github.com/yuansliu/minirmd -https://github.com/ptriska/WavesDash -https://github.com/facom/exorings -https://github.com/Theano/Theano -https://github.com/eWaterCycle/experiment-launcher -https://github.com/astro-informatics/sleplet -https://github.com/OSSOS/SurveySimulator -https://github.com/BIMSBbioinfo/pigx_scrnaseq -https://github.com/manodeep/TesseRACt -https://github.com/jdidion/atropos -https://github.com/RongquanWang/ELF-DPC -https://github.com/ropensci/plotly -https://github.com/CDSP-SCPO/WPSS-for-ESS-webpanel -https://github.com/ropensci/webmockr -https://github.com/ACCarnall/bagpipes -https://github.com/dgrun/FateID -https://github.com/MariaTsantaki/FASMA-synthesis -https://github.com/herrsalmi/FConverter -https://github.com/ropensci/traits -https://github.com/PyPO-dev/PyPO -https://github.com/sebastien-plutniak/archeofrag -https://github.com/davidemms/OrthoFinder -https://github.com/cwru-pat/cmb-multipole_vectors -https://github.com/johnschwenck/bp -https://github.com/seung-lab/FlyWirePaper -https://github.com/epic-astronomy/EPIC -https://github.com/davidebolo1993/TRiCoLOR -https://github.com/RangamaniLabUCSD/smart -https://github.com/transientskp/tkp -https://github.com/rferdman/afr -https://github.com/Griffan/VerifyBamID -https://github.com/CosmoStat/pmclib -https://github.com/natelust/least_asymmetry -https://github.com/ropensci/ritis -https://github.com/mkargo/pipeline -https://github.com/CEED/libCEED -https://github.com/ropensci/fingertipsR -https://github.com/jianhuupenn/SpaGCN -https://github.com/ropensci/ezknitr -https://github.com/temken/DaMaSCUS-CRUST -https://github.com/caracal-pipeline/caracal -https://github.com/AFD-Illinois/grim -https://github.com/elliohow/fMRI_ROI_Analysis_Tool -https://github.com/samtools/samtools -https://github.com/zhangrengang/SubPhaser -https://github.com/nabeelre/NIMBLE -https://github.com/natashabatalha/PandExo -https://github.com/sap218/jabberwocky -https://github.com/ropensci/daiquiri -https://github.com/aamedinburgh/igmtransmission -https://github.com/xinyiguan/py2lispIDyOM -https://github.com/USU-Analytics-Solution-Center/Bruno.jl -https://github.com/andreaminio/HaploSync -https://github.com/rega-cev/virulign -https://github.com/niosh-mining/obsplus -https://github.com/ropensci/writexl -https://github.com/CavendishAstrophysics/postmortem -https://github.com/YonghuiDong/RawHummus -https://github.com/aztekas-code/aztekas-main -https://github.com/3D-e-Chem/knime-molviewer -https://github.com/sylvainprigent/napari-tracks-reader -https://github.com/ropenscilabs/r2readthedocs -https://github.com/steven-murray/pydftools -https://github.com/telatin/bamtocov -https://github.com/1313e/PRISM https://github.com/Azeret/galIMF -https://github.com/aewallin/allantools -https://github.com/wilkelab/Opfi -https://github.com/perfanalytics/pose2sim -https://github.com/wtraylor/modular_megafauna_model -https://github.com/NLeSC/spot -https://github.com/bradkav/EarthShadow -https://github.com/n8thangreen/BCEA -https://github.com/bd-j/sedpy -https://github.com/wdecoster/nanofilt -https://github.com/thejasvibr/bat_beamshapes -https://github.com/WMD-group/Eris -https://github.com/kartheikiyer/dense_basis -https://github.com/moble/GWFrames -https://github.com/nanoporetech/pomoxis -https://github.com/gdrouart/MrMoose -https://github.com/jrkerns/pylinac -https://github.com/ruggiero/galstep -https://github.com/zhangyk8/sconce-scms -https://github.com/johncwok/CategoricalTimeSeries.jl -https://github.com/symmy596/Polypy -https://github.com/podondra/bayesian-sznet -https://github.com/CGAL/cgal -https://github.com/ropensci/tabulizer -https://github.com/Kuifje02/vrpy -https://github.com/ropenscilabs/allcontributors -https://github.com/StephenJHardy/SL1M -https://github.com/andresmegias/richvalues -https://github.com/JakobBD/pounce -https://github.com/meta-logic/sequoia -https://github.com/henrikju/resolve -https://github.com/AgrDataSci/climatrends +https://github.com/sanger-pathogens/ariba +https://github.com/ropensci/emld +https://github.com/openjournals/joss +https://github.com/AstraZeneca/kallisto +https://github.com/jteutenberg/downpore +https://github.com/Ge-Lab/USAT +https://github.com/ropensci/Rpolyhedra +https://github.com/hotokezaka/HeatingRate +https://github.com/MDAnalysis/mdanalysis +https://github.com/oschwengers/referenceseeker +https://github.com/EskelandLab/ShinyArchRUiO +https://github.com/Basvanstein/GSAreport +https://github.com/savila/HALOGEN +https://github.com/niceume/datasailr +https://github.com/spinicist/riesling +https://github.com/genome/somatic-sniper +https://github.com/studla/RYUTO +https://github.com/cconroy20/alf +https://github.com/desmid/mview +https://github.com/rajeshmondal18/DviSukta +https://github.com/riatelab/osrm +https://github.com/cb-geo/mpm +https://github.com/MrOlm/drep +https://github.com/rjtanner/StarburstPy +https://github.com/ppsp-team/PyNM +https://github.com/vals/umis https://github.com/ndrakos/ICICLE -https://github.com/ruggiero/clustep -https://github.com/BioHPC/MegaD -https://github.com/xmuyulab/DreamDIA-XMBD -https://github.com/ropensci/spiro -https://github.com/ropensci/unifir -https://github.com/wokast/PyCactus -https://github.com/denglab/SeqSero -https://github.com/lucabaldini/ixpeobssim -https://github.com/elkebir-group/derna -https://github.com/NKI-CCB/PRECISE -https://github.com/tatekawa-astron/PN -https://github.com/sahasuparna/DeMoS -https://github.com/Blosc/c-blosc -https://github.com/hytrac/amber -https://github.com/JuliaMatrices/LazyBandedMatrices.jl -https://github.com/elizabethnewman/hessQuik -https://github.com/alejandrobll/py-sphviewer -https://github.com/qianlivan/RPPPS -https://github.com/dsheward-astro/PyNAPLE -https://github.com/sverhoeven/docker-cartodb -https://github.com/SophieMLV/axionHMcode -https://github.com/JesusTorrado/extrapops -https://github.com/tomasstolker/pycrires -https://github.com/martinsparre/XSHPipelineManager -https://github.com/tylunel/pvpumpingsystem -https://github.com/rgmyr/corebreakout -https://github.com/ropensci/rorcid -https://github.com/ixkael/QuickSip -https://github.com/rrwick/Bandage -https://github.com/zhoulinumass/ML-wPBE -https://github.com/babelomics/impuSARS -https://github.com/sonwell/biotools -https://github.com/nathanael-fijalkow/DeepSynth -https://github.com/zclaytor/butterpy -https://github.com/lkmklsmn/DrivAER -https://github.com/kwkx/IPRP -https://github.com/mc-imperial/jfs -https://github.com/marbl/Krona -https://github.com/RoelofBerg/limereg -https://github.com/PDB-REDO/tortoize -https://github.com/nand1155/CausNet -https://github.com/vbaliga/gaussplotR -https://github.com/HenrykHaniewicz/PSRVoid -https://github.com/tlambert03/pycudadecon -https://github.com/sylabs/singularity -https://github.com/ropensci/outsider -https://github.com/leishenggit/CircleBase -https://github.com/clwainwright/CosmoTransitions -https://github.com/r-lib/credentials -https://github.com/Nextomics/nextsv -https://github.com/geoelements/gns -https://github.com/tvwenger/kd -https://github.com/danielemichilli/DM_phase -https://github.com/ropensci/spatsoc -https://github.com/sbird/GenPK -https://github.com/ChrisBeaumont/brut -https://github.com/husonlab/malt -https://github.com/mmahmoudian/sivs +https://github.com/ropensci/colocr +https://github.com/indrops/indrops +https://github.com/PathwayCommons/grounding-search +https://github.com/ropensci/jenkins +https://github.com/compomics/xilmass +https://github.com/ijuric/MAPS +https://github.com/AMReX-Astro/MAESTRO +https://github.com/BezuidenhoutMC/SeeKAT +https://github.com/pcingola/SnpEff +https://github.com/bcbio/bcbio-nextgen +https://github.com/watts-dev/watts +https://github.com/stammler/simframe +https://github.com/nmfs-fish-tools/SSMSE https://github.com/lbcb-sci/racon -https://github.com/davideamato/NAPLES -https://github.com/zhouzilu/DENDRO -https://github.com/jeffzhen/omnical -https://github.com/CosmoStat/shapepipe -https://github.com/johnpaulett/python-hl7 -https://github.com/deweylab/RSEM -https://github.com/ConorMacBride/mcalf -https://github.com/VU-BEAM-Lab/GENRE -https://github.com/mavrix93/LightCurvesClassifier -https://github.com/NLeSC/fairdatapoint -https://github.com/benhid/Sequoya -https://github.com/reedacartwright/dawg -https://github.com/cagrikymk/JAX-ReaxFF -https://github.com/rpetit3/fastq-dl -https://github.com/MichaelAbdul-Masih/SPAMMS -https://github.com/tidyverse/glue -https://github.com/3D-e-Chem/knime-pharmacophore -https://github.com/ropensci/qualtRics -https://github.com/rice-solar-physics/EBTEL -https://github.com/aroffringa/aartfaac2ms -https://github.com/oliverphilcox/Keplers-Goat-Herd -https://github.com/d-tear/SIAL -https://github.com/vsquicciarini/madys -https://github.com/mithun218/GiNaCDE -https://github.com/NLeSC/mcfly -https://github.com/icecube/TauRunner -https://github.com/mslonina/Mechanic -https://github.com/slzarate/parliament2 -https://github.com/ethankruse/koi3278 -https://github.com/VBlesius/RHRT -https://github.com/PeterDenton/ANA -https://github.com/bioinform/somaticseq -https://github.com/ncbi/BAMscale -https://github.com/ruta-k/uGMRT-pipeline -https://github.com/psheehan/pdspy -https://github.com/spacetelescope/hst_cosmic_rays -https://github.com/secimTools/SECIMTools -https://github.com/VincentAlcazer/StatAid -https://github.com/AndreaCaldiroli/ATES-Code -https://github.com/pydata/xarray -https://github.com/adamjermyn/Skye -https://github.com/swagnercarena/paltas -https://github.com/huiwenke/MineProt -https://github.com/bradkav/CEvNS -https://github.com/valeriabonapersona/RePAIR -https://github.com/PixelgenTechnologies/pixelator -https://github.com/FZJ-PGI-12/QAOA.jl -https://github.com/martinfleis/clustergram -https://github.com/cbirdferrer/collatrix -https://github.com/bayzidlab/SAINT-Angle -https://github.com/ropensci/chirps -https://github.com/nkhorshid/SimAb -https://github.com/easystats/parameters -https://github.com/ShubhadeepSadhukhan1993/fastSF -https://github.com/nasa/kepler-robovetter -https://github.com/refresh-bio/agc -https://github.com/McPHAC/McPHAC -https://github.com/jbattat/pep_core -https://github.com/daniel-muthukrishna/astrodash -https://github.com/vreverdy/magrathea-pathfinder -https://github.com/mjshao06/pdifFinder -https://github.com/AWehrhahn/SME -https://github.com/ggonnella/gfapy -https://github.com/martibosch/detectree -https://github.com/jydu/maffilter -https://github.com/aneeshnaik/spam -https://github.com/radio-astro-tools/uvcombine -https://github.com/aliojjati/MGCAMB -https://github.com/AP6YC/ClusterValidityIndices.jl -https://github.com/GabrielNakamura/FishPhyloMaker -https://github.com/ropensci/RSelenium -https://github.com/CDSP-SCPO/dataverse-feed -https://github.com/DeepRank/pdb2sql -https://github.com/emunte/vaRHC -https://github.com/mrc-ide/drjacoby -https://github.com/ImperialCollegeLondon/rcs-pacemakers -https://github.com/yangyongsan-bio/GREAP -https://github.com/ropensci/rentrez +https://github.com/JuliaMatrices/BlockBandedMatrices.jl +https://github.com/chapmanb/bcbio.variation +https://github.com/anuradhawick/LRBinner +https://github.com/AlexanderLabWHOI/EUKulele +https://github.com/lwang-astro/SDAR +https://github.com/sapearson/HSS +https://github.com/herjy/SLIT +https://github.com/davidaknowles/leafcutter +https://github.com/NETL-RIC/URC-Assessment-Method +https://github.com/TheFischerLab/FLEXR +https://github.com/radiocosmology/draco +https://github.com/eabaron/synow +https://github.com/paulmorio/gincco +https://github.com/mc-imperial/multicore-test-harness +https://github.com/OrchardLANL/DPFEHM.jl +https://github.com/tud-hri/travia +https://github.com/Guo-Jian-Wang/colfi +https://github.com/pokynmr/iPick +https://github.com/JiangFangzhou/SIDM +https://github.com/yukiteruono/pbsim2 +https://github.com/blackrim/phyutility +https://github.com/cosmicrays/hermes +https://github.com/ideasrule/platon https://github.com/nickk124/RCR -https://github.com/nlesc-nano/swan -https://github.com/ot483/NetCom -https://github.com/cgarraffo/StelNet -https://github.com/NKI-AI/direct -https://github.com/alexander-pastukhov/bistablehistory -https://github.com/s-goldman/Dusty-Evolved-Star-Kit -https://github.com/ArnaudCassan/microlensing -https://github.com/SamDuffield/bmm -https://github.com/ropensci/cRegulome -https://github.com/jeremysanders/xspec_emcee -https://github.com/milkschen/leviosam2 -https://github.com/ropensci/rsnps -https://github.com/phipsonlab/propeller-paper-analysis -https://github.com/siavashk/pycpd -https://github.com/ablab/nerpa -https://github.com/kgullikson88/Companion-Finder -https://github.com/Shamir-Lab/domino_web -https://github.com/SimCab-CHU/ifCNV-R -https://github.com/dokester/BayesicFitting -https://github.com/tomasstolker/species -https://github.com/DMGW-Goethe/imripy -https://github.com/BenMql/coral -https://github.com/jeremiah-corrado/fem_2d -https://github.com/silx-kit/pyFAI -https://github.com/Via-Appia/via-appia-online-viewer -https://github.com/samb8s/PsrPopPy -https://github.com/julianreul/mode_behave -https://github.com/ejsafron/SATCHEL -https://github.com/mengaldo/PySPOD -https://github.com/trichter/yam -https://github.com/ratt-ru/eidos -https://github.com/rrwick/Unicycler -https://github.com/semaphoreP/whereistheplanet -https://github.com/lrnv/cort -https://github.com/phac-nml/biohansel -https://github.com/lgrcia/prose -https://github.com/NLeSC/DiVE -https://github.com/biolab/orange-bio -https://github.com/stevenweaver/seqcomplexity -https://github.com/ropensci/rcrossref -https://github.com/semiautomaticgit/SemiAutomaticClassificationPlugin -https://github.com/EGaraldi/ZInCo -https://github.com/PRIS-CV/DS-UI -https://github.com/xavierdidelot/ClonalOrigin -https://github.com/ropensci/beastier -https://github.com/sciris/sciris -https://github.com/ropensci/taxize -https://github.com/aertslab/pySCENIC -https://github.com/SSDataLab/psfmachine -https://github.com/ni1o1/transbigdata -https://github.com/xraypy/xraylarch -https://github.com/abhisrkckl/GWecc -https://github.com/geodynamics/burnman -https://github.com/faircloth-lab/phyluce -https://github.com/mtceballos/SIRENAdoc -https://github.com/robertwissing/EOS -https://github.com/WMD-group/CarrierCapture.jl -https://github.com/ropensci/bikedata -https://github.com/UrbanRuralSystems/ur-scape -https://github.com/PacificBiosciences/pbbam -https://github.com/marcelauliano/MitoHiFi -https://github.com/bradkav/WIMpy_NREFT -https://github.com/rudeboybert/forestecology -https://github.com/tdaylan/pcat -https://github.com/pcubillos/rate -https://github.com/ulilautenschlager/crimp -https://github.com/mpound/pdrtpy -https://github.com/dirostri/CREPE -https://github.com/ropensci/jsonld -https://github.com/odelaneau/shapeit4 -https://github.com/igmhub/picca -https://github.com/miniufo/xinvert -https://github.com/vojtech-sidorin/quickclump -https://github.com/PDB-REDO/libcifpp -https://github.com/jiffyclub/palettable -https://github.com/simonsobs/nemo -https://github.com/ucl-exoplanets/ExoTETHyS -https://github.com/hansenjohnson/WhaleMap -https://github.com/LSSTDESC/CCL -https://github.com/pybel/bel-resources -https://github.com/hz1010/FIPRESCI_data_analysis -https://github.com/nanoporetech/tombo -https://github.com/paulhjkelly/taskgraph-metaprogramming -https://github.com/COMBINE-lab/cuttlefish -https://github.com/Quantum-Dynamics-Hub/libra-code -https://github.com/dgerosa/spops -https://github.com/dgbowl/yadg -https://github.com/TinkerTools/tinker-hp -https://github.com/nexml/nexml.java -https://github.com/huchiayu/ParticleGridMapper.jl -https://github.com/farhanferoz/BAMBI -https://github.com/akdeniz-uzay/A-Track -https://github.com/Gaiana/nirdust -https://github.com/mkplummer/Imber -https://github.com/lehtiolab/msstitch -https://github.com/esteinig/nanoq -https://github.com/ashleefv/ACEInhibPKPD -https://github.com/ColdThunder/NR-code -https://github.com/JASHunt/Snapdragons -https://github.com/dnonatar/Sequoia -https://github.com/ropensci/trufflesniffer -https://github.com/keatonb/Pyriod -https://github.com/nedRad88/SCALAR -https://github.com/jradavenport/TheHammer -https://github.com/mmp2/megaman -https://github.com/RitchieLab/hudson -https://github.com/recipy/recipy -https://github.com/astro-informatics/ssht +https://github.com/bic-nirrh/precocity +https://github.com/privong/pyMCSpearman +https://github.com/dputhier/pygtftk +https://github.com/PabloVD/CosmoGraphNet +https://github.com/vbaliga/gaussplotR +https://github.com/comprna/SUPPA +https://github.com/HCGB-IGTP/XICRA +https://github.com/JannisHoch/copro +https://github.com/barklem/abo-cross +https://github.com/SMTG-UCL/ShakeNBreak +https://github.com/felixchenier/kineticstoolkit +https://github.com/TNOCS/csWeb +https://github.com/DingshanDeng/DiskMINT +https://github.com/davidkipping/MACULA +https://github.com/sbailey/empca +https://github.com/linqs/psl +https://github.com/mtazzari/uvplot +https://github.com/dolaver/calsagos +https://github.com/rossjturner/RAiSERed +https://github.com/jacobmerson/model-traits +https://github.com/jsobeck/MOOG_SCAT +https://github.com/cire-thk/BifacialSimu +https://github.com/joshspeagle/dynesty +https://github.com/eScatter/pyelsepa +https://github.com/HengyueZ/astrofix +https://github.com/mrc-ide/individual +https://github.com/cistib/origami +https://github.com/djones1040/PythonPhot +https://github.com/biocore/scikit-bio +https://github.com/jellis18/PTMCMCSampler +https://github.com/auckland-cosmo/interp-mc +https://github.com/skendrew/midIR_sensitivity +https://github.com/sebhaan/geobo +https://github.com/ropensci/MODIStsp +https://github.com/r-cas/caracas +https://github.com/FireflySpectra/firefly_release +https://github.com/NLeSC/compressing-the-sky +https://github.com/galtay/sphray +https://github.com/MegaMorph/galapagos-c +https://github.com/csj607/STaRS +https://github.com/changliao1025/pyflowline +https://github.com/mes5k/amap-align +https://github.com/damonge/CoLoRe +https://github.com/icbm-iupui/STAFF +https://github.com/leapigufpb/FuzzyClass +https://github.com/ropensci/parzer +https://github.com/sethspjohnso/satmc +https://github.com/Kaixhin/PlaNet +https://github.com/insightsengineering/rbmi +https://github.com/CosmoStat/nicaea +https://github.com/ImperialCollegeLondon/pytest_template_application +https://github.com/dfm/corner.py +https://github.com/callendeprieto/ferre +https://github.com/biocore/unifrac-binaries +https://github.com/astronomyk/SimCADO +https://github.com/BGPS/distance-omnibus +https://github.com/vavrines/Kinetic.jl +https://github.com/ropensci/weathercan +https://github.com/qmarcou/IGoR +https://github.com/legacysurvey/unwise_psf +https://github.com/temken/obscura +https://github.com/rvaser/rampler +https://github.com/DarkQuestCosmology/dark_emulator_public +https://github.com/jianhuupenn/SpaGCN +https://github.com/nipreps/mriqc +https://github.com/spokenlanguage/platalea +https://github.com/mgckind/SparsePz +https://github.com/SynthSys/pyOmeroUpload +https://github.com/minkailin/stratsi +https://github.com/LiesaSalzer/MobilityTransformR +https://github.com/single-cell-genetics/cellsnp-lite +https://github.com/NLeSC/structure-from-motion +https://github.com/parklab/SCAN2 +https://github.com/astro-informatics/s2let +https://github.com/shirtsgroup/physical_validation +https://github.com/yqiuu/starduster +https://github.com/xinyiguan/py2lispIDyOM +https://github.com/PhaseTracer/PhaseTracer +https://github.com/COINtoolbox/CosmoPhotoz +https://github.com/giswqs/lidar +https://github.com/ropensci/visdat +https://github.com/tseemann/abricate +https://github.com/AusSRC/SoFiAX +https://github.com/HERA-Team/hera_opm +https://github.com/JorenSix/Olaf +https://github.com/lmwalkowicz/Cheetah +https://github.com/statgen/popscle +https://github.com/sanger-pathogens/circlator +https://github.com/shandley/hecatomb +https://github.com/ncbi/BAMscale +https://github.com/schlafly/crowdsource +https://github.com/henrikdvn/CRSocket +https://github.com/nworbde/dStar +https://github.com/saeyslab/nichenetr +https://github.com/Nico-Curti/rFBP +https://github.com/OMBoersma/DeepGlow +https://github.com/tidymodels/infer +https://github.com/RajLabMSSM/echolocatoR +https://github.com/seqcode/allo +https://github.com/ziyewang/ARG_SHINE +https://github.com/pysersic/pysersic +https://github.com/reality/klarigi +https://github.com/mrvollger/fibertools-rs +https://github.com/zhangrengang/SubPhaser +https://github.com/cbottrell/realsim_ifs +https://github.com/dmey/synthia +https://github.com/jls713/tact +https://github.com/iAART/aart +https://github.com/mikegrudic/MakeCloud +https://github.com/nespinoza/juliet +https://github.com/pyxnat/pyxnat +https://github.com/umbralcalc/nfield +https://github.com/gdrouart/MrMoose +https://github.com/epic-astronomy/EPIC +https://github.com/neuroneural/brainchop +https://github.com/sensein/etelemetry-client https://github.com/patkel/big-macs-calibrate -https://github.com/mrvollger/rustybam -https://github.com/quinlanW/dbMisLoc -https://github.com/exoml/plan-net -https://github.com/rochoa85/NTDHealth_Forms -https://github.com/zjupgx/modig -https://github.com/mrc-ide/PlasmoMAPI -https://github.com/SebOliver/PCA -https://github.com/tlancian/bio_cs -https://github.com/GWang2022/iGDP -https://github.com/jeremysanders/dsdeproj -https://github.com/a-griffiths/AutoSpec -https://github.com/ropensci/osmplotr -https://github.com/nyusngroup/pyMCZ -https://github.com/labxscut/ksak -https://github.com/barricklab/pLannotate -https://github.com/GijsMulders/epos -https://github.com/AnthonyOfSeattle/pyAscoreValidation -https://github.com/Pas-Kapli/mptp +https://github.com/msaland/THInCR-Suite +https://github.com/ismaelpessa/PyMUSE +https://github.com/ropensci/chirps +https://github.com/ACEnglish/truvari +https://github.com/BU-ISCIII/taranis +https://github.com/EOSC-LOFAR/lofar-ld +https://github.com/ericagol/TTVFaster +https://github.com/xfangcosmo/FFTLog-and-beyond +https://github.com/bartongroup/yanosim +https://github.com/biofold/ddgun +https://github.com/lsds/TaLoS +https://github.com/nanoporetech/flappie +https://github.com/emrecdem/emo-spectre +https://github.com/davidechicco/geneExpressionFromGEO +https://github.com/nservant/HiC-Pro +https://github.com/mgcooper/baseflow +https://github.com/rabrahm/ceres +https://github.com/YuLab-SMU/treeio +https://github.com/rdpstaff/TaxonomyTree +https://github.com/dstansby/pfsspy +https://github.com/calboo/Potential_Field_Calculator +https://github.com/hiddenSymmetries/simsopt +https://github.com/DedalusProject/eigentools +https://github.com/julblarod/SOPHISM +https://github.com/bjmorgan/py-sc-fermi +https://github.com/ncbi/datasets +https://github.com/arnauqb/qwind +https://github.com/SeamusClarke/RJplots +https://github.com/ajohnson-uoregon/llvm-project +https://github.com/FCS-analysis/PyCorrFit +https://github.com/cistrome/MIRA +https://github.com/jfowkes/pycutest +https://github.com/MichaelSel/edoJS +https://github.com/AndreinaCastillo/Genie_manuscript_data_analysis +https://github.com/ZacharyJia/opsdn +https://github.com/silburt/DeepMoon +https://github.com/hjens/lasso_spectra +https://github.com/fmihpc/analysator +https://github.com/fwhigh/stellar-locus-regression +https://github.com/hpparvi/ldtk +https://github.com/coccoinomane/song +https://github.com/NCAR/NCAR-Classic-Libraries-for-Geophysics +https://github.com/Yu606/odyssey +https://github.com/ropensci/rrricanesdata +https://github.com/ITA-Solar/rh +https://github.com/xcompact3d/Incompact3d +https://github.com/jdonnert/WVTICs +https://github.com/Kaixhin/Atari +https://github.com/nasa/K2CE +https://github.com/pysal/pysal +https://github.com/caracal-pipeline/caracal +https://github.com/idptools/metapredict +https://github.com/brentp/smoove +https://github.com/gmrandazzo/libscientific +https://github.com/kostergroup/SIMsalabim +https://github.com/recipy/recipy +https://github.com/jydu/physamp +https://github.com/jonathanHuwP/CrystalGrowthTracker +https://github.com/rgmyr/corebreakout +https://github.com/atchekho/harmpi +https://github.com/Starlink/aspic +https://github.com/DaehwanKimLab/hisat2 +https://github.com/inpefess/gym-saturation +https://github.com/morriscb/the-wizz +https://github.com/ropensci/namext +https://github.com/carlodev/SyntheticEddyMethod.jl +https://github.com/openmm/openmm +https://github.com/Martindelosrios/ROGER +https://github.com/ropensci/daiquiri +https://github.com/kjschmidlab/GGoutlieR +https://github.com/3D-e-Chem/knime-silicos-it +https://github.com/dzesmin/TEA +https://github.com/s-abbas/robnptests +https://github.com/ridgelab/rampAtlas +https://github.com/jaimedelacruz/stic +https://github.com/odb9402/CNNPeaks https://github.com/SciML/GlobalSensitivity.jl -https://github.com/ropensci/awardFindR -https://github.com/cconroy20/fsps -https://github.com/nickfarrow/GalacticDNSMass -https://github.com/astrobrent/mappings -https://github.com/OxES/k2sc -https://github.com/hpparvi/opents -https://github.com/AndreyTavleev/DiscVerSt -https://github.com/xavierdidelot/ClonalFrameML -https://github.com/Goobley/Radynversion -https://github.com/SeamusClarke/BTS -https://github.com/jts/nanopolish -https://github.com/Astroua/SCIMES -https://github.com/toddy15/medicalterms -https://github.com/willvousden/ptemcee -https://github.com/CosmoStat/mccd -https://github.com/pixixiaonaogou/MLSDR -https://github.com/astrorama/SourceXtractorPlusPlus -https://github.com/c3s-magic/c3s-magic-wps -https://github.com/libgamera/GAMERA -https://github.com/prdm0/ropenblas +https://github.com/nekokoe/Plasmer +https://github.com/qtltools/qtltools +https://github.com/saeyslab/CytoNorm_Figures +https://github.com/NREL/G2Aero +https://github.com/clawpack/clawpack +https://github.com/jdcphysics/validation +https://github.com/emerge-erc/ALminer +https://github.com/xenon-middleware/xenon-flow +https://github.com/ihrke/pypillometry +https://github.com/mbonav/Exo_DMC +https://github.com/cespinosa/pyHIIexplorerV2 +https://github.com/nutjunkie/IQmol +https://github.com/drupke/ifsfit +https://github.com/ropensci-org/roblog +https://github.com/nf-core/sarek +https://github.com/dfujim/bfit +https://github.com/amusecode/amuse +https://github.com/cmoestl/3DCORE +https://github.com/jonzink/EDI_Vetter_unplugged +https://github.com/jobovy/streamgap-pepper +https://github.com/mcfrith/tandem-genotypes +https://github.com/hpgem/nanomesh +https://github.com/ucl-exoplanets/pylightcurve +https://github.com/connor-lab/vapor +https://github.com/ngbusca/QuasarNET +https://github.com/jet-net/JetNet +https://github.com/kdm9/libqes +https://github.com/KiranLDA/PAMLr +https://github.com/CosmoStatGW/DarkSirensStat +https://github.com/interactivereport/scRNAsequest +https://github.com/tobiasrausch/lorax +https://github.com/PyFR/PyFR +https://github.com/artic-network/fieldbioinformatics +https://github.com/SCECcode/pycsep +https://github.com/Kkritos/Rapster +https://github.com/FabioRigamonti/BANG +https://github.com/ropensci/helminthR +https://github.com/fjdu/myRadex +https://github.com/bwengals/ccsnmultivar +https://github.com/cjbarrie/academictwitteR +https://github.com/MikeSWang/Harmonia +https://github.com/cosimameyer/overviewR +https://github.com/wangsiwei2010/FPMVS-CAG +https://github.com/ropensci/taxview +https://github.com/MannLabs/alphapept +https://github.com/1313e/PRISM +https://github.com/ropensci/patentsview +https://github.com/sjforeman/StringFast +https://github.com/fhcrc/seqmagick +https://github.com/katholt/srst2 +https://github.com/HKU-BAL/Clair3 +https://github.com/souzamonteiro/cnatool +https://github.com/seheonoh/2dbat +https://github.com/OBrink/RanDepict +https://github.com/danielemelini/ALMA3 +https://github.com/cochran4/GEMB +https://github.com/lsds/Neptune +https://github.com/ropensci/jagstargets +https://github.com/pavanvyn/triple-stability +https://github.com/ropensci/onekp +https://github.com/metaOmics/MetaPath +https://github.com/pmelchior/spender +https://github.com/rqtl/qtl2 +https://github.com/mpi4py/shmem4py +https://github.com/SSDataLab/psfmachine +https://github.com/WatsonLab/MAGpy +https://github.com/sonny-harman/snowball +https://github.com/free1234hm/CLAM +https://github.com/WMD-group/Eris +https://github.com/danielacarrasco/GLACiAR +https://github.com/Parsl/parsl +https://github.com/equib/EQUIB +https://github.com/alexander-mead/pyhalomodel +https://github.com/seung-lab/FlyWirePaper +https://github.com/wasserman-group/pyCADMium +https://github.com/DamCB/tyssue +https://github.com/PaulRitsche/DL_Track_US +https://github.com/cgobat/asymmetric_uncertainty +https://github.com/rajeshrinet/pystokes +https://github.com/ejhigson/nestcheck +https://github.com/mlarichardson/ramses2hsim +https://github.com/tvwenger/millennium-tap-query +https://github.com/daniel-muthukrishna/astrodash +https://github.com/fritzsedlazeck/SURVIVOR +https://github.com/nrao/UniPOPS +https://github.com/grazianoucci/cosmic_variance +https://github.com/rroyaute/h2_breeders_equation +https://github.com/fhaghighi/TransVW +https://github.com/twinl/website +https://github.com/ropensci/rglobi +https://github.com/antoinediez/Sisyphe +https://github.com/esteinig/nanoq +https://github.com/mtholder/ncl +https://github.com/Materials-Consortia/OPTIMADE-Filter +https://github.com/ylab-hi/ScanITD +https://github.com/Dailer/RCausticMass +https://github.com/RoelofBerg/limereg +https://github.com/ropensci/gitignore +https://github.com/pyFFTW/pyFFTW +https://github.com/benhid/Sequoya +https://github.com/xxsds/DYNAMIC +https://github.com/scikit-learn-contrib/hdbscan https://github.com/saopicc/DDFacet -https://github.com/ropensci/tif -https://github.com/EmmanuelSchaan/LaSSI -https://github.com/ImperialCollegeLondon/epidemia -https://github.com/hildebra/LCA -https://github.com/mlhutchins/LWPC -https://github.com/virgesmith/neworder -https://github.com/ericmandel/funtools -https://github.com/christophmschaefer/miluphcuda -https://github.com/kavonrtep/dante -https://github.com/ropensci/bomrang -https://github.com/ziotom78/Healpix.jl -https://github.com/ruizengalways/FOD-Net -https://github.com/ekg/smithwaterman -https://github.com/uwssg/APS -https://github.com/Hoecker-Lab/atligator -https://github.com/fripon/freeture -https://github.com/Schulik/aiolos +https://github.com/mrvollger/rustybam +https://github.com/agombolay/ribose-map +https://github.com/achaikova/frbmclust +https://github.com/coljac/sensie +https://github.com/saphir746/BiobankRead-Bash +https://github.com/xstarkit/MPI_XSTAR +https://github.com/fccoelho/epigrass +https://github.com/CullanHowlett/l-picola +https://github.com/jan-rybizki/Chempy +https://github.com/zenitani/OpenMHD +https://github.com/dwkim78/upsilon +https://github.com/ropensci/wateRinfo +https://github.com/fumi-github/omicwas +https://github.com/marcelauliano/MitoHiFi +https://github.com/cdalvaro/machine-learning-master-thesis +https://github.com/emunte/vaRHC +https://github.com/JASHunt/Snapdragons +https://github.com/rochoa85/NTDHealth_Forms +https://github.com/davidkipping/inversebeta +https://github.com/abatten/fruitbat +https://github.com/facom/exorings +https://github.com/tseemann/mlst +https://github.com/pybamm-team/liionpack +https://github.com/tkonolige/city2ba +https://github.com/bioexcel/biobb_wf_flexdyn +https://github.com/ropensci/wikitaxa +https://github.com/kimberg/voxbo +https://github.com/tatekawa-astron/3LPT-init +https://github.com/AshleySpindler/AstroVaDEr-Public +https://github.com/jkbonfield/io_lib +https://github.com/ropensci/trufflesniffer +https://github.com/vinisalazar/metaphor +https://github.com/natelust/least_asymmetry +https://github.com/abmantz/rgw +https://github.com/daeken/Emokit +https://github.com/copasi/basico +https://github.com/CoolWorlds/exoinformatics +https://github.com/aschafu/PSSH2 +https://github.com/dhubber/seren +https://github.com/lkmklsmn/DrivAER +https://github.com/BioSTEAMDevelopmentGroup/thermosteam +https://github.com/SciOmicsLab/PhenoComb +https://github.com/djbard/ccogs +https://github.com/cboursnell/crb-blast +https://github.com/milicolazo/Pyedra +https://github.com/JGCRI/osiris +https://github.com/chemfiles/chemfiles +https://github.com/bcgsc/TMBur +https://github.com/c-martinez/BeyondTheBook +https://github.com/svi-opensource/libics +https://github.com/jvc2688/K2-CPM +https://github.com/huiwenke/MineProt +https://github.com/nigyta/dfast_core +https://github.com/standage/AEGeAn +https://github.com/spacetelescope/jdaviz +https://github.com/ouyang-lab/PRAS +https://github.com/flekschas/regl-scatterplot +https://github.com/statgen/Minimac4 +https://github.com/ucam-department-of-psychiatry/camcops +https://github.com/RemoteSensingTools/vSmartMOM.jl +https://github.com/thegenemyers/DALIGNER +https://github.com/adcameron/ffancy +https://github.com/wonderful1/CNV-PG +https://github.com/ropensci/rnaturalearth +https://github.com/Filter-Bubble/e2e-Dutch +https://github.com/tvwenger/WISP +https://github.com/HITS-AIN/GPCC.jl +https://github.com/dingyaozhang/Evitar +https://github.com/abhisrkckl/GWecc +https://github.com/fkiwy/unTimely_Catalog_explorer +https://github.com/ropensci/getCRUCLdata +https://github.com/ExpressionAnalysis/ea-utils +https://github.com/INCEPTdk/adaptr +https://github.com/DrSoulain/PREVIS +https://github.com/brentp/hts-nim-tools +https://github.com/VALENCE-software/VALENCE +https://github.com/surhh/nfitsview +https://github.com/CrowdTruth/CrowdTruth +https://github.com/hsinnan75/MapCaller +https://github.com/aamedinburgh/igmtransmission +https://github.com/smirarab/pasta +https://github.com/jobovy/simple-m2m +https://github.com/eWaterCycle/ewatercycle +https://github.com/smoh/kinesis +https://github.com/SimonPfeifer/cows +https://github.com/msm550/DMATIS +https://github.com/exoclime/HELIOS-K +https://github.com/pynbody/tangos +https://github.com/ifilot/edp +https://github.com/rmjarvis/TreeCorr +https://github.com/sambit-giri/tools21cm +https://github.com/Samreay/Marz +https://github.com/mavrix93/LightCurvesClassifier +https://github.com/dstndstn/astrometry.net https://github.com/ropensci/tokenizers -https://github.com/manodeep/Corrfunc -https://github.com/pennsignals/chime -https://github.com/tpospisi/NNKCDE -https://github.com/marcelm/dnaio -https://github.com/SKA-INAF/caesar-rest -https://github.com/temuller/hostphot -https://github.com/lamyj/odil -https://github.com/lanl/swiftbat_python -https://github.com/gsuissa/hardCORE -https://github.com/weizhongli/cdhit -https://github.com/jw-lin/lightbeam -https://github.com/SandyYuan/s3PCF -https://github.com/Kaixhin/Atari -https://github.com/RussellJurek/busy-function-fitting -https://github.com/ebellm/pyraf-dbsp -https://github.com/markusbonse/applefy -https://github.com/will-rowe/groot -https://github.com/sklasfeld/DANPOS3 -https://github.com/jydu/physamp -https://github.com/EdoardoCarlesi/cmbeasy -https://github.com/dazhwu/pydynpd -https://github.com/zkdtc/MLC_ELGs -https://github.com/younglab/origami -https://github.com/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner -https://github.com/Eventdisplay/Eventdisplay -https://github.com/sensein/etelemetry-client -https://github.com/DKMS/Hapl-o-Mat_WinBin -https://github.com/pelahi/TreeFrog -https://github.com/SSAGESproject/SSAGES -https://github.com/Astroua/TurbuStat -https://github.com/jakobherpich/pyICs -https://github.com/ropensci/nomisr -https://github.com/he2016012996/CABnet -https://github.com/njcuk9999/apero-drs -https://github.com/gmarcais/Quorum +https://github.com/ggonnella/gfapy +https://github.com/baiwenjia/ukbb_cardiac +https://github.com/KonradHoeffner/hdt +https://github.com/HHTpy/HHTpywrapper +https://github.com/kbarbary/sep +https://github.com/introlab/opentera +https://github.com/alexander-shen/rtest +https://github.com/kno10/python-kmedoids +https://github.com/tjlcbakx/redshift-search-graphs +https://github.com/bodenlab/GRASP +https://github.com/karlotness/adrt +https://github.com/jfoster17/extinction-distances +https://github.com/PDB-REDO/cif-tools +https://github.com/martinfleis/clustergram +https://github.com/hsci-r/finnish-media-scrapers +https://github.com/ArgoCanada/argodata +https://github.com/chanzuckerberg/cellxgene +https://github.com/Valdes-Tresanco-MS/NbThermo +https://github.com/4pisky/fourpisky-core +https://github.com/matiscke/lcps +https://github.com/PEREGRINE-GW/peregrine +https://github.com/sfschen/velocileptors +https://github.com/webbjj/clustertools +https://github.com/jobovy/extreme-deconvolution +https://github.com/ofionnad/radiowinds +https://github.com/jstjohn/SeqPrep +https://github.com/undark-lab/sstrax +https://github.com/ZJUFanLab/bulk2space +https://github.com/huchiayu/ParticleGridMapper.jl +https://github.com/francescoa97outlook/pyExoRaMa +https://github.com/steven-murray/mrpy +https://github.com/teoxxx/nemiss_pbl +https://github.com/matthiasfabry/spinOS +https://github.com/Gabaldonlab/jloh +https://github.com/mrc-ide/odin +https://github.com/ImperialCollegeLondon/ICLOCS +https://github.com/Midnighter/dependency-info +https://github.com/easystats/parameters +https://github.com/florisvb/PyNumDiff +https://github.com/NLeSC/Massive-PotreeConverter +https://github.com/NLeSC/PattyAnalytics +https://github.com/pyccel/pyccel +https://github.com/shengjin/Nii +https://github.com/margudo/LSSGALPY +https://github.com/reneshbedre/bioinfokit +https://github.com/ParisAstronomicalDataCentre/OPUS +https://github.com/BorgwardtLab/simbsig +https://github.com/benjaminbolling/RSW +https://github.com/sanger-pathogens/iva +https://github.com/BU-hammerTeam/PyHammer +https://github.com/IndrajeetPatil/ggstatsplot +https://github.com/flexible-atomic-code/fac +https://github.com/mtceballos/SIRENAdoc +https://github.com/Caltech-IPAC/Montage +https://github.com/RozanskiT/suppnet +https://github.com/NeoGeographyToolkit/StereoPipeline +https://github.com/LucaMalavolta/CCFpams +https://github.com/VeinsOfTheEarth/rabpro +https://github.com/light-curve/light-curve +https://github.com/pmvreeswijk/BlackBOX +https://github.com/robashaw/libecpint +https://github.com/bwa-mem2/bwa-mem2 +https://github.com/tvwenger/HII-Region-Models +https://github.com/andersdot/photoParallax +https://github.com/SpaceOdyssey/Blobby3D +https://github.com/MichaelAbdul-Masih/SPAMMS +https://github.com/thomgrand/fim-python +https://github.com/biocore/unifrac +https://github.com/sosl/H-FISTA +https://github.com/matteolucchini1/BHJet +https://github.com/ropensci/tabulizer +https://github.com/wilsonrljr/sysidentpy +https://github.com/barklem/kaulakys +https://github.com/minaskar/zeus +https://github.com/tony-travis/PIQUE +https://github.com/citiususc/veryfasttree +https://github.com/spectralcode/OCTproZ +https://github.com/e-koch/FilFinder +https://github.com/jiwoncpark/baobab +https://github.com/ICRAR/daliuge +https://github.com/bmvdgeijn/WASP +https://github.com/jonathansick/starfish +https://github.com/SpaceML/GalaxyGAN +https://github.com/ants-project/ANTs +https://github.com/ecological-cities/home2park +https://github.com/ICAMS/strucscan +https://github.com/ot483/NetCom +https://github.com/soedinglab/metaeuk +https://github.com/migp11/pyfastcore +https://github.com/python-hydro/pyro2 +https://github.com/GreiffLab/immuneREF +https://github.com/LSSTDESC/sacc +https://github.com/smsharma/dark-photons-perturbations +https://github.com/SAIL-Labs/AMICAL +https://github.com/bioinform/somaticseq +https://github.com/sevenstarknight/SSMM +https://github.com/torognes/swarm +https://github.com/COMBINE-lab/cuttlefish +https://github.com/jdhenshaw/acorns +https://github.com/ropensci/allodb +https://github.com/tobiasrausch/wally +https://github.com/rrwick/Bandage +https://github.com/jonas/tig +https://github.com/manodeep/Corrfunc +https://github.com/tupui/scipy +https://github.com/macrocosme/time_domain_astronomy_sandbox +https://github.com/marbl/Krona +https://github.com/aroffringa/aartfaac2ms +https://github.com/quatrope/ProperImage +https://github.com/MJTemple/qsogen +https://github.com/JelfsMaterialsGroup/stk +https://github.com/KeplerGO/K2fov +https://github.com/bootphon/phonemizer +https://github.com/pontoppi/radlite +https://github.com/virus-evolution/gofasta +https://github.com/ropensci/dbhydroR +https://github.com/pjedge/longshot +https://github.com/mcfrith/dnarrange +https://github.com/alexrhowe/APOLLO +https://github.com/PaulHancock/Robbie +https://github.com/cbg-ethz/LolliPop +https://github.com/KerryAM-R/ggVolcanoR +https://github.com/hillerlab/GenomeAlignmentTools +https://github.com/jfarek/xatlas +https://github.com/astro-datalab/noaosourcecatalog +https://github.com/Pas-Kapli/mptp +https://github.com/0satoken/Eclairs +https://github.com/rrwick/Porechop +https://github.com/EMBL-Hentze-group/htseq-clip +https://github.com/jboynyc/textnets +https://github.com/bioinfo-ut/PlasmidSeeker +https://github.com/pfaucon/PBSIM-PacBio-Simulator +https://github.com/ropensci/robotstxt +https://github.com/lpantano/seqcluster +https://github.com/spacetelescope/hst_cosmic_rays +https://github.com/nasa/prog_models +https://github.com/DirectDM/directdm-mma +https://github.com/lberaldoesilva/naif +https://github.com/astropy/specutils +https://github.com/erf-model/ERF +https://github.com/DrDaveShaw/INCHEM-Py +https://github.com/mrc-ide/global-lmic-reports-orderly +https://github.com/datngu/Circall +https://github.com/biswajitmb/DarpanX +https://github.com/nmslib/hnswlib +https://github.com/Cantera/cantera +https://github.com/RangamaniLabUCSD/smart +https://github.com/brentp/cigar +https://github.com/ropensci/stantargets +https://github.com/Bahler-Lab/pyphe +https://github.com/ropensci/opentripplanner +https://github.com/ropensci/arkdb +https://github.com/kimpenn/VERSE +https://github.com/ropensci/GSODR +https://github.com/kushaltirumala/WaldoInSky +https://github.com/david-barnett/microViz +https://github.com/citation-file-format/citation-file-format +https://github.com/918particle/AskaryanModule +https://github.com/hanyue36/nanoplexer +https://github.com/vibbits/phyd3 +https://github.com/Illumina/canvas +https://github.com/bartongroup/RoSA +https://github.com/gogrean/PyXel +https://github.com/lynx-x-ray-observatory/soxs +https://github.com/DMGW-Goethe/imripy +https://github.com/milnus/Corekaburra +https://github.com/taranu/AllStarFit +https://github.com/PrincetonUniversity/Athena-Cversion +https://github.com/andersen-lab/ivar +https://github.com/fforster/DELIGHT +https://github.com/fair-workflows/fairworkflows +https://github.com/cameronliang/bayesvp +https://github.com/AprilYuge/ResPAN +https://github.com/Bgi-LUSH/GPMeta +https://github.com/JanCBrammer/biopeaks +https://github.com/caselawanalytics/CaseLawAnalytics +https://github.com/rudolffu/pyfosc +https://github.com/nf-core/mag +https://github.com/tyo-nu/pickaxe_paper +https://github.com/ropensci/censo2017 +https://github.com/eWaterCycle/experiment-launcher +https://github.com/clauswilke/PeptideBuilder +https://github.com/jgagneastro/CoMover +https://github.com/hpc4cmb/toast +https://github.com/meta-logic/sequoia +https://github.com/reznik-lab/MIRTH +https://github.com/torognes/vsearch +https://github.com/DESI-UR/VAST +https://github.com/htjb/globalemu +https://github.com/rordenlab/dcm2niix +https://github.com/spacetelescope/stsynphot_refactor +https://github.com/koszullab/pareidolia +https://github.com/maickrau/GraphAligner +https://github.com/dzerbino/velvet +https://github.com/matthewholman/assist +https://github.com/spectrapepper/spectrapepper +https://github.com/ReGIS-org/regis-v2 +https://github.com/RWTH-EBC/AixCaliBuHA +https://github.com/cusbg/MolArt +https://github.com/locasto/libdisorder +https://github.com/tariks/peakachu +https://github.com/AstroAccelerateOrg/astro-accelerate +https://github.com/simonsobs/nemo +https://github.com/lpantano/seqbuster +https://github.com/pmelchior/skymapper +https://github.com/pepkit/geofetch +https://github.com/GRChombo/GRChombo +https://github.com/daler/gffutils +https://github.com/psheehan/pdspy +https://github.com/sap218/jabberwocky +https://github.com/broadinstitute/Drop-seq +https://github.com/COMBINE-lab/alevin-fry +https://github.com/metawards/MetaWards +https://github.com/beastraban/INSANE +https://github.com/amusecode/TRES +https://github.com/google/best +https://github.com/jlenain/flaapluc +https://github.com/andr1976/HydDown +https://github.com/qianlivan/RPPPS +https://github.com/edwardoughton/itmlogic +https://github.com/auranic/ClinTrajan +https://github.com/ropensci/pathviewr +https://github.com/multiwavelength/redshifts +https://github.com/jmschrei/pomegranate +https://github.com/JGCRI/plutus +https://github.com/NLESC-JCER/QMCblip +https://github.com/vhaasteren/piccard +https://github.com/hyperopt/hyperopt https://github.com/bretthandrews/flexce -https://github.com/CRPropa/CRPropa3 -https://github.com/tudelft3d/3dfier -https://github.com/eead-csic-compbio/get_homologues -https://github.com/XGI-MSU/WDMWaveletTransforms -https://github.com/MADHATdm/MADHAT -https://github.com/jfwallin/JSPAM -https://github.com/eleniadam/npgreat -https://github.com/CTU-Bern/presize -https://github.com/ropensci/RNeXML -https://github.com/ggobi/ggobi -https://github.com/pmelchior/epsnoise -https://github.com/bwvdnbro/HydroCode1D -https://github.com/ropensci/tidypmc -https://github.com/HillLab/SomaticSiMu -https://github.com/dianna-ai/dianna -https://github.com/phillippro/agatha -https://github.com/LTLA/basilisk -https://github.com/kundajelab/phantompeakqualtools -https://github.com/mbhall88/rasusa -https://github.com/ICB-DCM/pyABC -https://github.com/dfm/corner.py -https://github.com/NLeSC/eEcology-script-wrapper -https://github.com/XuhanLiu/DrugEx -https://github.com/Midnighter/dependency-info -https://github.com/sfeeney/ddspectra -https://github.com/rhenanbartels/hrv -https://github.com/staphopia/staphopia-paper -https://github.com/NeuralEnsemble/elephant -https://github.com/libdynd/dynd-python -https://github.com/QuaCaTeam/quaca -https://github.com/JonasRieger/ldaPrototype -https://github.com/DingshanDeng/DiskMINT -https://github.com/rivasiker/PhaseTypeR -https://github.com/lsds/Teechain -https://github.com/yuhuan-wu/MobileSal -https://github.com/QibangLiu/PDLSM-FEM_mpi -https://github.com/ropensci/terrainr -https://github.com/BenWibking/quokka -https://github.com/lsds/Saber -https://github.com/DebduttaPaul/luminosity_function_of_lGRBs -https://github.com/highamm/sptotal -https://github.com/PyPSA/linopy -https://github.com/cvbuchem/LavAtmos -https://github.com/smaret/astrochem -https://github.com/astro-informatics/RequiSim -https://github.com/ropensci/slopes -https://github.com/KTH-Nek5000/UQit -https://github.com/ParkvilleData/MetaGenePipe -https://github.com/jnktsj/DNApi -https://github.com/lh3/fermi-lite +https://github.com/jenniferlu717/Bracken +https://github.com/openscm/openscm-twolayermodel +https://github.com/medvedevgroup/TwoPaCo +https://github.com/mary77/scQcut +https://github.com/afarahi/PoPE +https://github.com/Zilong-Li/PCAone +https://github.com/WorkflowConversion/CTDopts +https://github.com/shenlab-sinai/ngsplot +https://github.com/umbralcalc/foxi +https://github.com/davidkipping/flicker +https://github.com/nluetts/NoisySignalIntegration.jl +https://github.com/Illumina/akt +https://github.com/MIC-DKFZ/TractSeg https://github.com/AMReX-Astro/MAESTROeX -https://github.com/cjneely10/EukMetaSanity -https://github.com/jmschrei/pomegranate -https://github.com/fpavogt/E0102-VR -https://github.com/iipharma/pharmamind-molminer -https://github.com/neurogenomics/MAGMA_Celltyping -https://github.com/afeinstein20/eleanor -https://github.com/NLeSC/PattyAnalytics -https://github.com/cboursnell/crb-blast -https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts -https://github.com/3D-e-Chem/tycho-knime-node-archetype -https://github.com/Substra/substra -https://github.com/CoolWorlds/ExoPriors -https://github.com/engyasin/Offline_MOT -https://github.com/spacetelescope/stginga -https://github.com/GoekeLab/xpore +https://github.com/pipliggins/EVolve +https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener +https://github.com/mneeleman/qubefit +https://github.com/c3s-magic/c3s-magic-wps +https://github.com/SebastianBocquet/pygtc +https://github.com/MaudeDavidLab/GMEmbeddings +https://github.com/BartoszBartmanski/StoSpa2 +https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI +https://github.com/pytoolz/toolz +https://github.com/odlomax/spamcart-dev +https://github.com/zclaytor/butterpy +https://github.com/GBLille/MassiveFold +https://github.com/VincentAlcazer/StatAid +https://github.com/JuliaMatrices/LazyBandedMatrices.jl +https://github.com/ashleefv/ACEInhibPKPD +https://github.com/jbrakensiek/CORBITS +https://github.com/iobio-zjut/IPTDFold +https://github.com/asntech/intervene +https://github.com/glis-glis/loci +https://github.com/astro-friedel/CADRE +https://github.com/xdqso/xdqso +https://github.com/dkirkby/gphist +https://github.com/linsalrob/PhiSpy +https://github.com/tseemann/snippy +https://github.com/rsnemmen/BCES https://github.com/smeingast/PNICER -https://github.com/SCM-NV/pyZacros -https://github.com/ArgonneCPAC/diffmah -https://github.com/sina-cb/Tn-seqExplorer +https://github.com/gromacs/gromacs +https://github.com/gmbrandt/HTOF +https://github.com/sheneman/clearcut +https://github.com/nespinoza/ld-exosim +https://github.com/zooniverse/starpy +https://github.com/mirochaj/ares +https://github.com/luinix/pesco +https://github.com/odelaneau/shapeit5 +https://github.com/bwvdnbro/CMacIonize +https://github.com/kdeck/TTVFast https://github.com/ropensci/rperseus -https://github.com/nevrome/bleiglas -https://github.com/vallis/libstempo -https://github.com/agreenbaum/ImPlaneIA -https://github.com/bradkav/runDM -https://github.com/ropensci/getCRUCLdata -https://github.com/mchalela/GriSPy -https://github.com/donaldRwilliams/BGGM -https://github.com/Multiversario/satcand -https://github.com/Valcin/BE_HaPPy -https://github.com/MehrnooshTahani/MappingBLOS_MolecularClouds -https://github.com/ncbi/ngs -https://github.com/dpseidel/stmove -https://github.com/VarStarDetect/varstardetect -https://github.com/shangguandong1996/FindIT2 -https://github.com/astropy/astroscrappy -https://github.com/evolbioinfo/goalign -https://github.com/CosmoStatGW/gwfast -https://github.com/mathjax/MathJax -https://github.com/tnakazato/priism -https://github.com/kehrlab/PopDel -https://github.com/MartianColonist/POSEIDON -https://github.com/MrOlm/drep -https://github.com/openmm/openmm -https://github.com/MarioRomeroC/Mixclask -https://github.com/cameron314/concurrentqueue -https://github.com/DeepRank/iScore -https://github.com/astropy/ccdproc -https://github.com/CosmoLike/CosmoCov -https://github.com/atfrank/PyShifts -https://github.com/singularityhub/singularity-hpc -https://github.com/gheald/rmclean -https://github.com/JDabringhausen/BiPoS1 -https://github.com/tcassanelli/pywpf -https://github.com/BEAST-Fitting/beast -https://github.com/rrwick/Filtlong -https://github.com/JiangFangzhou/SIDM -https://github.com/vcflib/vcflib -https://github.com/SJTU-CGM/ivTerm -https://github.com/jellis18/PTMCMCSampler -https://github.com/zachetienne/nrpytutorial -https://github.com/JieZheng-ShanghaiTech/PiLSL -https://github.com/lzx325/DeeReCT-APA-repo -https://github.com/DEIB-GECO/BC_Intrinsic_subtyping -https://github.com/rordenlab/dcm2niix -https://github.com/raddleverse/MimiBRICK.jl -https://github.com/arq5x/lumpy-sv -https://github.com/soedinglab/hh-suite -https://github.com/plazar/TOASTER -https://github.com/LucaJRossi/NIGO -https://github.com/COMBINE-lab/libgff -https://github.com/wangchao-malab/DeepAc4C -https://github.com/LCOGT/banzai -https://github.com/UM-PEPL/HallThruster.jl -https://github.com/rikenbit/iTensor -https://github.com/Libsharp/libsharp -https://github.com/reznik-lab/MIRTH -https://github.com/soylentdeen/CounterPoint -https://github.com/LBNL-ETA/MSWH -https://github.com/lazzati-astro/MCRaT -https://github.com/annehutter/grid-model -https://github.com/churchmanlab/genewalk -https://github.com/ucl-exoplanets/TauREx3_public +https://github.com/FEniCS/basix +https://github.com/meinardmueller/libfmp +https://github.com/josegit88/SCORPIO +https://github.com/JulioHC00/PEPITA +https://github.com/GregoryFaust/yaha +https://github.com/MonashSmartStructures/ospgrillage +https://github.com/meinardmueller/synctoolbox +https://github.com/egjergo/GalCEM +https://github.com/aberer/RogueNaRok +https://github.com/annayqho/TheCannon +https://github.com/ziotom78/libpolycomp +https://github.com/SegataLab/lefse +https://github.com/lantunes/cellpylib +https://github.com/mgalardini/pyseer +https://github.com/Cadaei-Yuvxvs/OSHy-X +https://github.com/pjcigan/multicolorfits +https://github.com/mpokorny/vysmaw +https://github.com/PabloVD/HaloGraphNet +https://github.com/tinglabs/scAIDE +https://github.com/ropensci/pubchunks +https://github.com/TinkerTools/tinker9 +https://github.com/McPHAC/McPHAC +https://github.com/ChrisBeaumont/brut +https://github.com/NLESC-JCER/QMCTorch +https://github.com/PabloVD/21cmDeepLearning +https://github.com/soedinglab/MMseqs2 +https://github.com/smithlabcode/abismal +https://github.com/tcollett/LensPop +https://github.com/bio-phys/BioEn +https://github.com/ADThomas-astro/oxaf +https://github.com/babelomics/impuSARS +https://github.com/pyamg/pyamg +https://github.com/EnsembleGovServices/kamodo-core +https://github.com/vpc-ccg/svict +https://github.com/PfizerRD/sit2standpy +https://github.com/cbirdferrer/collatrix +https://github.com/annajenul/UBayFS +https://github.com/myrafproject/myrafproject +https://github.com/JanLeppert/GasChromatographySimulator.jl +https://github.com/Hoecker-Lab/atligator +https://github.com/elwinter/nnde +https://github.com/mdlreyes/void-dwarf-analysis +https://github.com/Libensemble/libensemble +https://github.com/biocore/deblur +https://github.com/brainglobe/bg-atlasapi +https://github.com/arq5x/poretools +https://github.com/ropensci/USAboundaries +https://github.com/smithlabcode/dnmtools +https://github.com/ropensci/camsRad +https://github.com/bwkeller/PASTA +https://github.com/floodlight-sports/floodlight +https://github.com/secastel/phaser +https://github.com/tmcclintock/AReconstructionTool +https://github.com/facebookresearch/segment-anything +https://github.com/constantAmateur/SoupX +https://github.com/opengeos/segment-geospatial +https://github.com/paulbrodersen/netgraph +https://github.com/stedolan/jq +https://github.com/guangtunbenzhu/NonnegMFPy +https://github.com/neeravkaushal/RIDs-in-WCDs +https://github.com/OpenMD/OpenMD +https://github.com/geza-kovacs/tran_k2 +https://github.com/vfonov/DARQ +https://github.com/ropensci/hddtools +https://github.com/CederGroupHub/smol +https://github.com/ropensci/taxizedb +https://github.com/nand1155/CausNet +https://github.com/jalombar/starsmasher +https://github.com/CNIC-Proteomics/TurboPutative-web +https://github.com/exoplanet-dev/celerite2 +https://github.com/hydrosolutions/riversCentralAsia +https://github.com/prajwel/curvit +https://github.com/Valires/er-evaluation +https://github.com/pec27/lizard +https://github.com/APGG-Lab/APGG +https://github.com/DGtal-team/DGtal +https://github.com/ropensci/rnaturalearthdata +https://github.com/jw-lin/lightbeam https://github.com/astrom-tom/specstack -https://github.com/obertscheiderfhwn/RTMsim -https://github.com/seqan/lambda -https://github.com/mfruzan/HaploMaker -https://github.com/phac-nml/sistr_cmd -https://github.com/biosimulations/Biosimulations -https://github.com/hildebra/sdm -https://github.com/OpenGene/fastp -https://github.com/MMV-Lab/mmv_im2im -https://github.com/Kamuish/archi -https://github.com/iquasere/UPIMAPI -https://github.com/ropensci/osmdata -https://github.com/rickhelmus/patRoon -https://github.com/dmnfarrell/epitopepredict -https://github.com/Ge-Lab/USAT -https://github.com/ajshajib/LensingETC -https://github.com/AstarVienna/AnisoCADO -https://github.com/ImperialCollegeLondon/sharpy -https://github.com/institut-de-genomique/HAPO-G -https://github.com/nanoporetech/pinfish +https://github.com/NLeSC/xtas https://github.com/ropensci/rdatacite -https://github.com/HAWinther/MG-PICOLA-PUBLIC -https://github.com/nmfs-fish-tools/SSMSE -https://github.com/vcflib/bio-vcf -https://github.com/gilestrolab/pySolo -https://github.com/EoRImaging/FHD -https://github.com/dstansby/pfsspy -https://github.com/EnricoCorsaro/FAMED -https://github.com/glis-glis/loci -https://github.com/jpahlers/LASR -https://github.com/matthiasfabry/spinOS -https://github.com/brainets/frites -https://github.com/humanfactors/FIPS -https://github.com/jhparkastro/gpcal -https://github.com/richteague/disksurf -https://github.com/coolneighbors/unWISE-verse -https://github.com/igmhub/baofit -https://github.com/gem-pasteur/macsyfinder -https://github.com/esperlman/JetCurry +https://github.com/keurfonluu/toughio +https://github.com/Box-Tools/BoxKit +https://github.com/guillochon/MOSFiT +https://github.com/ComparativeGenomicsToolkit/cactus +https://github.com/ConnorDonegan/geostan +https://github.com/kim554/wdec +https://github.com/mihanke/athos +https://github.com/tyo-nu/MINE-app +https://github.com/cgarraffo/StelNet +https://github.com/bonsai-team/matam +https://github.com/adrn/SuperFreq +https://github.com/tp2vis/distribute +https://github.com/ucl-exoplanets/ExoTETHyS +https://github.com/HillLab/SomaticSiMu +https://github.com/JulianBMunoz/Zeus21 +https://github.com/Alymantara/pydoppler +https://github.com/ropenscilabs/allcontributors +https://github.com/pmlmodelling/nctoolkit +https://github.com/jeffcsauer/arcos_arcospy_information +https://github.com/BioMedIA/MIRTK +https://github.com/flemingtonlab/SpliceV +https://github.com/ConorMacBride/mcalf +https://github.com/BenNordick/HiLoop +https://github.com/CosmoTool/ECLIPSE +https://github.com/nanograv/enterprise +https://github.com/Jinsl-lab/SDImpute +https://github.com/luxsrc/gray +https://github.com/bbercovici/SBGAT +https://github.com/LoganAMorrison/Hazma +https://github.com/NLeSC/nlesc-serverless-boilerplate +https://github.com/benvanwerkhoven/kernel_tuner +https://github.com/ArtificialStellarPopulations/ArtPop +https://github.com/anderslogg/geco +https://github.com/trichter/yam +https://github.com/geodynamics/burnman +https://github.com/farhanferoz/MultiNest +https://github.com/rcarragh/c212 https://github.com/arangrhie/merfin -https://github.com/YinanZhao21/SOAP_GPU -https://github.com/esa/pagmo2-paper -https://github.com/zavolanlab/PAQR2 -https://github.com/abinit/abinit -https://github.com/bommert/stabm -https://github.com/mifumagalli/cluster-cloc -https://github.com/COMBINE-lab/alevin-fry -https://github.com/bxlab/metaWRAP -https://github.com/McMahonCosmologyGroup/holosim-ml -https://github.com/bpp/bpp -https://github.com/ropensci/staypuft -https://github.com/circuitgraph/circuitgraph -https://github.com/tbisbas/PDFchem -https://github.com/EpiVec/TDLM -https://github.com/Kaixhin/Autoencoders -https://github.com/AndreNicolasChene/DRAGRACES -https://github.com/jonathansick/skyoffset -https://github.com/cbrnr/sigviewer -https://github.com/Huang-CL/Magrathea -https://github.com/OwenWard/ppdiag -https://github.com/deeptools/deeptools_intervals -https://github.com/domschrei/mallob -https://github.com/KiranLDA/PAMLr -https://github.com/HengyueZ/astrofix -https://github.com/christinahedges/contaminante -https://github.com/cbottrell/realsim_ifs -https://github.com/esheldon/ngmix -https://github.com/quatrope/feets -https://github.com/tresoldi/ngesh -https://github.com/GOMC-WSU/GOMC -https://github.com/MDAnalysis/mdanalysis -https://github.com/python-hydro/pyro2 -https://github.com/ejikeugba/gofcat +https://github.com/TheMillerLab/genetex +https://github.com/yiling0210/APIR +https://github.com/ropensci/dataaimsr +https://github.com/jeffdaily/parasail-python +https://github.com/NLeSC/Chemical-Analytics-Platform +https://github.com/GEUS-Glaciology-and-Climate/pypromice +https://github.com/FelixKrueger/TrimGalore +https://github.com/kylemede/ExoSOFT +https://github.com/nedRad88/SCALAR +https://github.com/SJTU-CGM/ivTerm +https://github.com/mateidavid/nanocall +https://github.com/nanoporetech/medaka +https://github.com/DeepRank/pdb2sql +https://github.com/NLeSC/ahn-pointcloud-viewer-ws +https://github.com/SuperKogito/spafe +https://github.com/Starlink/ORAC-DR +https://github.com/yhoogstrate/fastafs +https://github.com/bcgov/shinyssdtools +https://github.com/dgerosa/spops +https://github.com/cmateu/PyMGC3 +https://github.com/RongquanWang/ELF-DPC +https://github.com/husonlab/megan-ce +https://github.com/CRG-CNAG/anubis +https://github.com/JGCRI/rfasst +https://github.com/deezer/spleeter +https://github.com/natashabatalha/picaso +https://github.com/eWaterCycle/eWaterleaf https://github.com/lpfworld/DMPNet -https://github.com/parkus/scicatalog -https://github.com/AstroUGent/shadowfax -https://github.com/insightsengineering/rbmi -https://github.com/NorwegianVeterinaryInstitute/ALPPACA -https://github.com/candYgene/pbg-ld -https://github.com/franciscovillaescusa/Pylians -https://github.com/basp-group/SARA-dimensionality-reduction -https://github.com/pmelchior/spender -https://github.com/pengweixing/FACT -https://github.com/FCS-analysis/PyScanFCS -https://github.com/cmzmasek/forester -https://github.com/LucaMalavolta/CCFpams -https://github.com/hsinnan75/MapCaller -https://github.com/giswqs/leafmap -https://github.com/cajohare/NeutrinoFog -https://github.com/STEllAR-GROUP/octotiger -https://github.com/Jesper-Karsten/MBASC -https://github.com/ropensci/taxview -https://github.com/user29A/JPFITS -https://github.com/cochran4/GEMB -https://github.com/candYgene/QTM -https://github.com/fred3m/toyz -https://github.com/ropensci/rfishbase -https://github.com/aobr/gsf -https://github.com/jan-rybizki/Galaxia_wrap -https://github.com/nanoporetech/flappie -https://github.com/JuliaArrays/InfiniteArrays.jl -https://github.com/wullm/fastdf -https://github.com/TomKellyGenetics/graphsim -https://github.com/Starlink/aspic -https://github.com/jluastro/PopSyCLE -https://github.com/simoncasassus/ConeRot +https://github.com/LSSTDESC/CCL +https://github.com/PrincetonUniversity/FastTemplatePeriodogram +https://github.com/BIMSBbioinfo/pigx_scrnaseq +https://github.com/twesterhout/lattice-symmetries +https://github.com/Rocsg/FijiRelax +https://github.com/statOmics/satuRnPaper +https://github.com/YangLab/CIRCexplorer2 +https://github.com/DataIntellSystLab/KARGA +https://github.com/FitSNAP/FitSNAP +https://github.com/citiususc/BigSeqKit +https://github.com/Goobley/Radynversion +https://github.com/ExoplanetML/Nigraha +https://github.com/bcgov/bcdata +https://github.com/eweitz/ideogram +https://github.com/sparks-baird/xtal2png +https://github.com/ropensci/gistr +https://github.com/johnveitch/cpnest +https://github.com/YSOVAR/YSOVAR +https://github.com/ropensci/rtika +https://github.com/csmsoftware/IMPaCTS +https://github.com/TravisWheelerLab/NINJA +https://github.com/occupationMeasurement/occupationMeasurement +https://github.com/xenon-middleware/pyxenon +https://github.com/cl3425/Clairvoyance +https://github.com/podondra/eidein +https://github.com/ismael-mendoza/ShapeMeasurementFisherFormalism +https://github.com/oliverphilcox/PolyBin +https://github.com/finagle29/DBSP_DRP +https://github.com/ropensci/riem +https://github.com/3D-e-Chem/knime-sygma +https://github.com/philres/ngmlr +https://github.com/gtw2i/GA-Galaxy +https://github.com/epi2me-labs/mapula +https://github.com/ckm3/Py-PDM +https://github.com/haiyang1986/TVAR +https://github.com/ropensci/bowerbird +https://github.com/darrencroton/sage https://github.com/takafumi291/ESSENCE -https://github.com/ihmwg/python-modelcif -https://github.com/andreyshabalin/TwinEQTL -https://github.com/cobilab/altair -https://github.com/isakro/shoredate -https://github.com/dfm/celerite -https://github.com/ToyotaCRDL/mahos -https://github.com/jmackereth/orbit-estimation -https://github.com/pachterlab/kallisto -https://github.com/ropensci/DoOR.functions -https://github.com/glue-viz/glue -https://github.com/alexander-mead/collapse -https://github.com/alan-turing-institute/MLJ.jl -https://github.com/OrchardLANL/DPFEHM.jl -https://github.com/dynamicslab/pysindy -https://github.com/ropensci/popler -https://github.com/ernewton/tellrv -https://github.com/ngbusca/QuasarNET -https://github.com/AprilYuge/ResPAN -https://github.com/nespinoza/juliet -https://github.com/aconley/simple_cosfitter -https://github.com/arq5x/grabix -https://github.com/galizia-lab/pyview -https://github.com/AlexandrosAntoniadis/ODUSSEAS -https://github.com/elwinter/nnde -https://github.com/jorisparet/partycls -https://github.com/nhejazi/txshift -https://github.com/AstrobioMike/GToTree -https://github.com/timothydmorton/VESPA -https://github.com/SHTOOLS/SHTOOLS -https://github.com/ropensci/phylocomr -https://github.com/CosmoStat/nicaea -https://github.com/mscaudill/openseize -https://github.com/nye17/javelin -https://github.com/planck-npipe/hillipop -https://github.com/nipreps/mriqc -https://github.com/johnh2o2/cuvarbase -https://github.com/scikit-image/scikit-image -https://github.com/maxpumperla/hyperas -https://github.com/kerkelae/disimpy -https://github.com/tortellini-tools/action -https://github.com/Trovemaster/TROVE -https://github.com/FelixKrueger/TrimGalore -https://github.com/ropensci/mauricer -https://github.com/theia-dev/Qiber3D -https://github.com/steven-murray/mrpy -https://github.com/EcoJulia/SimpleSDMLayers.jl -https://github.com/wouterpeere/GHEtool -https://github.com/C3BI-pasteur-fr/toppred -https://github.com/gtonkinhill/fastbaps -https://github.com/JGCRI/rmap -https://github.com/heuermh/dishevelled-bio -https://github.com/ACCarnall/SpectRes -https://github.com/bow/fsnviz -https://github.com/MRChemSoft/mrchem -https://github.com/AstraZeneca/kallisto -https://github.com/abrupt-climate/hyper-canny -https://github.com/gmarcais/Jellyfish -https://github.com/tseemann/VelvetOptimiser -https://github.com/CederGroupHub/smol +https://github.com/cmayer/BaitFisher-package +https://github.com/ropensci/mctq +https://github.com/sbraden/circle-craters +https://github.com/CSB5/lofreq +https://github.com/PACurran/MCSpearman +https://github.com/Xomics/ACTIONdemonstrator_workflow +https://github.com/bayzidlab/SAINT-Angle +https://github.com/3D-e-Chem/knime-kripodb +https://github.com/christophuv/PeakBot_Example +https://github.com/aidenlab/juicer +https://github.com/dunnkers/fseval +https://github.com/fair-software/howfairis +https://github.com/LSSTDESC/Spectractor +https://github.com/alawryaguila/multi-view-AE +https://github.com/nexml/nexml.java +https://github.com/lucaborsato/trades +https://github.com/STEllAR-GROUP/octotiger +https://github.com/tgrimes/SeqNet +https://github.com/blankhaar/PORTAL +https://github.com/ropensci/tic +https://github.com/denglab/SeqSero +https://github.com/amkozlov/raxml-ng +https://github.com/Electrostatics/apbs +https://github.com/joergbuchwald/joss_ogs6py_VTUinterface +https://github.com/tresoldi/ngesh +https://github.com/tpospisi/RFCDE +https://github.com/lskatz/SneakerNet https://github.com/BIMSBbioinfo/pigx_rnaseq -https://github.com/CRG-CNAG/anubis -https://github.com/MillionConcepts/lhorizon -https://github.com/sanger-pathogens/Artemis -https://github.com/PhaseTracer/PhaseTracer -https://github.com/adrn/schwimmbad -https://github.com/mp3guy/ElasticFusion -https://github.com/teamPSG/kNN_Sleep_Scorer_kNNSS https://github.com/biocore/sortmerna -https://github.com/votca/xtp -https://github.com/eggplantbren/Exoplanet -https://github.com/ropensci/oai -https://github.com/gilestrolab/ethoscope -https://github.com/llt1836/TE-HI-GCN +https://github.com/Kaixhin/Autoencoders +https://github.com/FiorenSt/AutoSourceID-Light +https://github.com/ejikeugba/serp +https://github.com/EESI/Complet-Plus +https://github.com/elliohow/fMRI_ROI_Analysis_Tool +https://github.com/MNiwano/Eclaire +https://github.com/GregoryFaust/samblaster +https://github.com/aspuru-guzik-group/funsies +https://github.com/MRCIEU/PHESANT +https://github.com/brandon-rhodes/python-jplephem +https://github.com/ropensci/historydata +https://github.com/mriener/gausspyplus +https://github.com/tcherninceline/PPInteractions +https://github.com/mlujnie/simple +https://github.com/galaxyproject/ansible-tiaas2 +https://github.com/NLeSC/pycoeman +https://github.com/zhanglabtools/CASAVA +https://github.com/magnusmanske/snpomatic +https://github.com/CHRF-Genomics/Paratype +https://github.com/zpliulab/GENELink +https://github.com/sjteresi/TE_Density +https://github.com/AbbasAlameer/geoCancerPrognosticDatasetsRetriever +https://github.com/ropensci/geonames +https://github.com/DirectDM/directdm-py +https://github.com/LMBooth/pybci +https://github.com/oliverphilcox/encore +https://github.com/ebundhoo/TAGOPSIN +https://github.com/Ensembl/WiggleTools +https://github.com/cog-imperial/entmoot +https://github.com/NLeSC/eAstroViz +https://github.com/ropensci-review-tools/pkgstats +https://github.com/Illumina/manta +https://github.com/beckrob/Photo-z-SQL +https://github.com/vincentvaneylen/k2photometry +https://github.com/indraniel/fqgrep +https://github.com/sevenstarknight/OCDetector +https://github.com/zonca/python-qucs +https://github.com/GoelandProver/Goeland +https://github.com/CavendishAstrophysics/anmap +https://github.com/mne-tools/mne-python +https://github.com/OpenWaterAnalytics/EPyT +https://github.com/Circuitscape/Omniscape.jl +https://github.com/clwainwright/CosmoTransitions +https://github.com/rhdtownsend/gyre +https://github.com/V-Bernal/GeneNetTools +https://github.com/GATB/MindTheGap +https://github.com/fraserw/trippy +https://github.com/chhylp123/hifiasm +https://github.com/fabian-sp/GGLasso +https://github.com/MesserLab/SLiM +https://github.com/ImperialCollegeLondon/sharpy +https://github.com/mlower/rmnest +https://github.com/dfm/celerite +https://github.com/xenon-middleware/osmium +https://github.com/dynamics-of-stellar-systems/dynamite_release +https://github.com/rinikerlab/Ensembler +https://github.com/yrjia1015/CRISPRCasStack +https://github.com/ratschlab/metagraph +https://github.com/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark +https://github.com/pyomeca/ezc3d +https://github.com/Stuermer/EchelleSimulator +https://github.com/reedacartwright/dawg +https://github.com/Muhammad-Arif-NUST/BVP_Pred_Unb +https://github.com/fdebras/ECLIPS3D +https://github.com/Starlink/pal +https://github.com/hetalang/heta-compiler +https://github.com/astroCV/astroCV +https://github.com/ropensci/rfisheries +https://github.com/rribeiro-sci/pygomodo +https://github.com/bfarr/kombine +https://github.com/JoeMcEwen/FAST-PT +https://github.com/pkestene/xsmurf +https://github.com/n-claes/legolas +https://github.com/kevin218/Eureka +https://github.com/RuiningZHAO/wcpy +https://github.com/HingeAssembler/HINGE +https://github.com/ropensci/bib2df +https://github.com/AndreNicolasChene/DRAGRACES +https://github.com/MIC-DKFZ/HD-BET +https://github.com/davidebolo1993/TRiCoLOR https://github.com/fkiwy/Finder_charts -https://github.com/yuliadm/mixComp -https://github.com/vavrines/Kinetic.jl -https://github.com/SPARTA-dev/SPARTA -https://github.com/MD-Studio/cerulean -https://github.com/soedinglab/metaeuk -https://github.com/eucp-project/storyboards -https://github.com/jpierel14/snsed -https://github.com/pysersic/pysersic -https://github.com/pec27/smerfs -https://github.com/ajeldorado/falco-python -https://github.com/jkbonfield/crumble -https://github.com/cancerit/alleleCount -https://github.com/donovan-h-parks/RefineM -https://github.com/devanshkv/fetch -https://github.com/Bonfanti88/MCMCI -https://github.com/RECETOX/MSMetaEnhancer -https://github.com/chrishales/pieflag -https://github.com/sparks-baird/xtal2png -https://github.com/bthorne93/PySM_public -https://github.com/paulmorio/gincco -https://github.com/nsoranzo/sspace_basic -https://github.com/zonca/dst -https://github.com/JohannesBuchner/PyMultiNest -https://github.com/baxmittens/VTUFileHandler.jl -https://github.com/linneas/condetri -https://github.com/easystats/correlation -https://github.com/ImperialCollegeLondon/research-software-directory -https://github.com/U-Alberta/ADaPT-ML -https://github.com/nigyta/dfast_core -https://github.com/PyPSA/atlite -https://github.com/pnnl/interflow -https://github.com/dtanoglidis/DeepShadows -https://github.com/ester-project/ester -https://github.com/ropensci/elastic -https://github.com/lofar-astron/RMextract -https://github.com/aidenlab/juicer -https://github.com/bokunoBike/m6AGE -https://github.com/logan-pearce/lofti_gaia -https://github.com/szhorvat/IGraphM -https://github.com/HLasse/TextDescriptives -https://github.com/mtazzari/binary +https://github.com/nespinoza/mc-spam +https://github.com/siminegroup/E2EDNA2 +https://github.com/JuliaMatrices/BandedMatrices.jl +https://github.com/jkbonfield/htscodecs +https://github.com/snystrom/memes +https://github.com/Quantum-Dynamics-Hub/libra-code +https://github.com/multiply-org/sar-pre-processing +https://github.com/LSSTDESC/WeakLensingDeblending +https://github.com/VU-BEAM-Lab/GENRE +https://github.com/LucyMcGowan/tipr +https://github.com/realfastvla/rfpipe +https://github.com/geoelements/gns +https://github.com/husonlab/malt +https://github.com/ropensci/textreuse +https://github.com/daiqile96/OTTERS_paper +https://github.com/transientskp/lpf +https://github.com/wesleyburr/subMaldi https://github.com/reneheller/pile-up -https://github.com/HaowenZhang/TRINITY -https://github.com/bramvandijk88/cacatoo -https://github.com/ctSkennerton/crass -https://github.com/MikeSWang/HorizonGRound -https://github.com/cdslaborg/paramonte -https://github.com/gausspy/gausspy -https://github.com/asgr/celestial -https://github.com/sisl/POMDPStressTesting.jl +https://github.com/EMResearch/EvoMaster +https://github.com/astro-informatics/ssht +https://github.com/bbbbbbzhou/MDPET +https://github.com/lnferris/ocean_data_tools +https://github.com/ropensci/rplos +https://github.com/lukapecnik/NiaAML +https://github.com/vsquicciarini/madys +https://github.com/FlorianThibord/OptimiR +https://github.com/rivasiker/PhaseTypeR +https://github.com/timstaley/amisurvey +https://github.com/marieBvr/virAnnot +https://github.com/ncbi/vadr +https://github.com/DeepMIALab/UC-NfNet +https://github.com/pkugyf/MST +https://github.com/ropensci/qualtRics +https://github.com/pmoulos/metaseqR2 +https://github.com/fjdu/rac-2d +https://github.com/abacusorg/zeldovich-PLT +https://github.com/ladsantos/p-winds +https://github.com/sibirrer/lenstronomy +https://github.com/cconroy20/fsps +https://github.com/danielreardon/scintools +https://github.com/JamesPaynter/PyGRB +https://github.com/gokalpcelik/ROHMMCLI +https://github.com/UCBerkeleySETI/blimpy +https://github.com/pachterlab/kallisto +https://github.com/C0PEP0D/otto +https://github.com/macrocosme/amber_meta +https://github.com/AndreaCaldiroli/ATES-Code +https://github.com/OceanGenomics/mudskipper +https://github.com/iancze/PSOAP +https://github.com/jakeown/astroclover +https://github.com/FraunhoferIWES/foxes +https://github.com/ropensci/rWBclimate +https://github.com/NctuICLab/PredCRP +https://github.com/RafaelSdeSouza/qrpca +https://github.com/barklem/hlinop +https://github.com/arabic-digital-humanities/adhtools +https://github.com/ropensci/rtweet +https://github.com/jesford/cluster-lensing +https://github.com/MrShoenel/metrics-as-scores +https://github.com/sieunhanbom04/support-exploration-matrix-factorization +https://github.com/ropensci/antiword +https://github.com/adamgayoso/totalVI_reproducibility +https://github.com/3d-pli/fastpli +https://github.com/MaceKuailv/seaduck +https://github.com/stefanradev93/BayesFlow +https://github.com/ggmichael/craterstats +https://github.com/ziyewang/MetaBinner +https://github.com/FastMLC/fMLC +https://github.com/stammler/dustpylib +https://github.com/jmackereth/orbit-estimation +https://github.com/teoxxx/nemiss_proper +https://github.com/staphopia/staphopia-paper +https://github.com/WGLab/InterVar +https://github.com/Qiskit-Extensions/qiskit-dynamics +https://github.com/cog-imperial/galini +https://github.com/ropensci/rorcid +https://github.com/FergusDonnan/PyROA +https://github.com/ireis/PRF +https://github.com/IBMTRostock/GIFT +https://github.com/bacpop/pp-sketchlib +https://github.com/ropensci/tradestatistics +https://github.com/voutcn/megahit +https://github.com/ropensci/essurvey +https://github.com/yjx1217/RecombineX +https://github.com/kd0kfo/cosmology +https://github.com/JungleComputing/rocket +https://github.com/thetisproject/thetis +https://github.com/cadop/seg1d +https://github.com/zhangyk8/sconce-scms +https://github.com/ropensci/rrricanes +https://github.com/kungfugo/BellDiagonalQudits.jl +https://github.com/basp-group/SARA-dimensionality-reduction +https://github.com/Kaixhin/spinning-up-basic +https://github.com/ncbi/sra-tools +https://github.com/QuantEcon/QuantEcon.py +https://github.com/EpistasisLab/tpot +https://github.com/flosalbizziae/kataegis +https://github.com/miguelcarcamov/csromer +https://github.com/infer-actively/pymdp +https://github.com/i-VRESSE/pdbtbx-ts +https://github.com/Lyalpha/spalipy +https://github.com/eaobservatory/jcmt_coadd +https://github.com/DEIB-GECO/genereg +https://github.com/jamesrhester/Lerche.jl +https://github.com/iomega/zenodo-upload +https://github.com/jiffyclub/palettable +https://github.com/kkjawz/coref-ee +https://github.com/xenon-middleware/xenon +https://github.com/MJCliffe/PASCal +https://github.com/szpiech/selscan +https://github.com/ropensci/refsplitr +https://github.com/tensorlayer/TensorLayer +https://github.com/OpenWaterAnalytics/pyswmm +https://github.com/jordanlab/STing +https://github.com/andresmegias/richvalues +https://github.com/koenderks/jaspAudit +https://github.com/NMBU-Data-Science/RENT +https://github.com/SYalouz/QuantNBody +https://github.com/TeamPerie/CellDestiny +https://github.com/buschlab/fhirspark +https://github.com/vsoch/citelang +https://github.com/pydemull/activAnalyzer +https://github.com/ckarako/RRATtrap +https://github.com/ylxu05/HN-PPISP +https://github.com/lehtiolab/msstitch +https://github.com/eggplantbren/DNest3 +https://github.com/JDabringhausen/BiPoS1 +https://github.com/fmichel/TurtleKit +https://github.com/alesantuz/musclesyneRgies +https://github.com/CosmoLike/CosmoCov +https://github.com/potree/PotreeConverter +https://github.com/ropensci/rb3 +https://github.com/tortellini-tools/action +https://github.com/galsci/pysm +https://github.com/ropensci/webmockr +https://github.com/ropensci/worrms +https://github.com/Substra/substra +https://github.com/SwissClinicalTrialOrganisation/secuTrialR +https://github.com/fripon/freeture +https://github.com/PedroBarbosa/VETA +https://github.com/NLeSC/eEcology-script-wrapper +https://github.com/Huang-CL/Magrathea +https://github.com/sxs-collaboration/gwsurrogate +https://github.com/tiberioap/grav_waldo +https://github.com/deepskies/deeplenstronomy +https://github.com/elizakempton/Exo_Transmit +https://github.com/snfactory/binaryoffset +https://github.com/jradavenport/TheHammer +https://github.com/YuRui8879/MRASleepNet +https://github.com/nliulab/HRnV-Calc +https://github.com/dokester/BayesicFitting +https://github.com/aertslab/pySCENIC +https://github.com/JSB-UCLA/scPNMF +https://github.com/Ashod/garli +https://github.com/marcelm/cutadapt +https://github.com/kendomaniac/docker4seq +https://github.com/ropensci/treestartr +https://github.com/HajkD/LTRpred +https://github.com/UK-Digital-Heart-Project/4Dsegment +https://github.com/smithlabcode/preseq +https://github.com/cajohare/NeutrinoFog +https://github.com/marbl/Mash +https://github.com/spacetelescope/imexam +https://github.com/lasseignelab/CINmetrics +https://github.com/storyofthewolf/ExoRT +https://github.com/soedinglab/spacepharer +https://github.com/medvedevgroup/varmatch +https://github.com/dirostri/CREPE +https://github.com/cytham/nanovar +https://github.com/imperialchem/mrd-demo +https://github.com/thegenemyers/DEXTRACTOR +https://github.com/ParBLiSS/FastANI +https://github.com/kinnala/scikit-fem +https://github.com/haoharryfeng/NeuCA +https://github.com/valentineap/pyprop8 +https://github.com/ELeeAstro/gCMCRT +https://github.com/dgobbi/vtk-dicom +https://github.com/COMBINE-lab/simpleaf +https://github.com/rudeboybert/forestecology +https://github.com/Astroua/TurbuStat +https://github.com/Open-ET/flux-data-qaqc +https://github.com/dengzhuo-AI/Real-Fundus +https://github.com/ianvcaldas/smalldisco +https://github.com/nikhilroxtomar/FANet +https://github.com/CosmoStat/score +https://github.com/s4hts/HTStream +https://github.com/parallelwindfarms/byteparsing +https://github.com/ketch/RK-Opt +https://github.com/pynbody/genetIC +https://github.com/portsmouth/cmbview +https://github.com/amanchokshi/EMBERS +https://github.com/SCM-NV/nano-qmflows +https://github.com/dianna-ai/dianna +https://github.com/jGetMove/jGetMove +https://github.com/MD-Studio/MDStudio +https://github.com/adrn/schwimmbad +https://github.com/philres/catfishq +https://github.com/enthought/mayavi +https://github.com/basp-group/Optical-Interferometry-Trilinear +https://github.com/EdanRein/pyPplusS +https://github.com/rvaser/spoa +https://github.com/telatin/bamtocov +https://github.com/gpertea/gclib +https://github.com/eEcoLiDAR/Laserfarm +https://github.com/the-rccg/hw2d +https://github.com/QZH2022/germline_flow +https://github.com/ropensci/bittrex +https://github.com/PyTables/PyTables +https://github.com/griffithlab/regtools +https://github.com/tud-hri/joan +https://github.com/PyPSA/linopy +https://github.com/jgrembi/riskCommunicator +https://github.com/AgentM-GEG/residual_feature_extraction +https://github.com/yongsukyee/uncertain_blackholemass +https://github.com/dpryan79/libBigWig +https://github.com/ElsevierSoftwareX/SOFTX_2020_119 +https://github.com/monarch-initiative/loinc2hpo +https://github.com/ropensci/rbace +https://github.com/ropensci/treebase +https://github.com/MichielCottaar/velbin +https://github.com/barentsen/dave +https://github.com/will-rowe/groot +https://github.com/ropensci/rusda +https://github.com/bpp/bpp +https://github.com/dh4gan/oberon +https://github.com/CheerfulUser/TESSreduce +https://github.com/obertscheiderfhwn/RTMsim +https://github.com/CSUBioGroup/GraphLncLoc +https://github.com/AFD-Illinois/grim +https://github.com/londumas/redvsblue +https://github.com/ropensci/wdman +https://github.com/hemanthpruthvi/PyAstroPol +https://github.com/mengaldo/PySPOD +https://github.com/ratt-ru/CubiCal +https://github.com/AstarVienna/AnisoCADO +https://github.com/v-morello/clfd +https://github.com/egonw/bacting +https://github.com/loneknightpy/idba +https://github.com/Libsharp/libsharp +https://github.com/jan-rybizki/Galaxia_wrap https://github.com/wdecoster/nano-snakemake -https://github.com/nespinoza/mc-spam -https://github.com/vterron/lemon -https://github.com/ropensci/treedata.table -https://github.com/bolverk/huji-rich -https://github.com/chapmanb/bcbb -https://github.com/ropensci/git2r -https://github.com/deeptools/pyBigWig -https://github.com/mcfrith/dnarrange -https://github.com/sheinasim/HiFiAdapterFilt -https://github.com/rajeshmondal18/N-body -https://github.com/sanger-pathogens/pymummer -https://github.com/kritiyer/AngioNet -https://github.com/nespinoza/exonailer -https://github.com/ropensci/rzmq -https://github.com/CyclotronResearchCentre/bidsme -https://github.com/lucaborsato/trades -https://github.com/bonsai-team/matam -https://github.com/WangLabTHU/DeSP -https://github.com/carnotresearch/cr-sparse -https://github.com/JorenSix/Olaf -https://github.com/sanger-pathogens/ariba -https://github.com/COINtoolbox/CosmoPhotoz -https://github.com/KonradHoeffner/hdt -https://github.com/mswzeus/TargetNet +https://github.com/steven-murray/powerbox +https://github.com/cheng-zhao/FCFC +https://github.com/richteague/eddy +https://github.com/nlesc-dirac/sagecal +https://github.com/churchmanlab/genewalk +https://github.com/3D-e-Chem/knime-pharmacophore +https://github.com/VanLoo-lab/ascat +https://github.com/hpparvi/MuSCAT2_transit_pipeline +https://github.com/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection +https://github.com/DEIB-GECO/OpenGDC +https://github.com/ropensci/MtreeRing +https://github.com/saezlab/PHONEMeS +https://github.com/HajimeKawahara/juwvid +https://github.com/mzytnicki/srnaMapper +https://github.com/realfastvla/realfast +https://github.com/JulianBMunoz/21cmvFAST +https://github.com/mentatpsi/OSGenome +https://github.com/subisarkar/JexoSim +https://github.com/galtay/urchin +https://github.com/grazianoucci/game +https://github.com/LuisScoccola/persistable +https://github.com/morpheus-project/morpheus +https://github.com/nlppln/nlppln +https://github.com/cwru-pat/cmb-multipole_vectors +https://github.com/PaulSt/NGSTrefftz https://github.com/bluefoxr/COINr -https://github.com/michaelhb/superplot -https://github.com/carronj/plancklens -https://github.com/fogellab/multiWGCNA -https://github.com/ropensci/drake -https://github.com/lanl/GLUE -https://github.com/lyf222/alpconv -https://github.com/N-BodyShop/smooth -https://github.com/enthought/mayavi -https://github.com/aqtech-ca/mctreesearch4j -https://github.com/maxibor/sam2lca -https://github.com/SIOSlab/exodetbox -https://github.com/interactivereport/scRNAsequest +https://github.com/captain-exoplanet/misttborn +https://github.com/ComputationalPhysiology/simcardems +https://github.com/t-brandt/orvara +https://github.com/patscott/DDCalc +https://github.com/dglaeser/gridformat +https://github.com/Sulstice/cocktail-shaker +https://github.com/bokulich-lab/q2-fondue +https://github.com/dvallesp/vortex +https://github.com/msalibian/RBF +https://github.com/phenology/cgc +https://github.com/ropensci/cchecks +https://github.com/johnlees/seer +https://github.com/ropensci/epubr +https://github.com/ebmonson/2DFFTUtils-Module +https://github.com/stemangiola/tidyHeatmap +https://github.com/tcassanelli/pywpf +https://github.com/dutilh/CAT +https://github.com/arq5x/bedtools2 +https://github.com/qiime2/q2-vsearch +https://github.com/natir/rustyread +https://github.com/AngusWright/LAMBDAR +https://github.com/aasensio/sicon +https://github.com/lzx325/DeeReCT-APA-repo +https://github.com/USNavalResearchLaboratory/eispac +https://github.com/pelican/pelican +https://github.com/astroML/gatspy +https://github.com/milkschen/leviosam2 +https://github.com/apertif/apercal +https://github.com/mroosmalen/nanosv +https://github.com/birnstiel/two-pop-py +https://github.com/UBC-Astrophysics/kd-match +https://github.com/ropensci-review-tools/pkgcheck +https://github.com/YihanWangAstro/SpaceHub +https://github.com/dcorre/otrain +https://github.com/jumphone/InferLoop +https://github.com/NASA-PDS/naif-pds4-bundler +https://github.com/matvii/ADAM +https://github.com/nithyanandan/PRISim +https://github.com/sid-krish/Rhometa_Full_Genome +https://github.com/DynaSlum/satsense +https://github.com/cylammarco/WDPhotTools +https://github.com/arnauqb/Qwind.jl +https://github.com/XGI-MSU/WDMWaveletTransforms +https://github.com/ropensci/tiler +https://github.com/bradkav/AntiparticleDM +https://github.com/JieZheng-ShanghaiTech/PiLSL +https://github.com/astrobrent/itera +https://github.com/guilledufort/EnanoFASTQ +https://github.com/ArenA-Crowds/Crowds +https://github.com/multiwavelength/gleam +https://github.com/oscaribv/pyaneti +https://github.com/nlesc-nano/ceiba +https://github.com/ZhaoXM-Lab/metaMIC +https://github.com/ChileanVirtualObservatory/indexing_utfsm +https://github.com/ropensci/clifro +https://github.com/slzarate/parliament2 +https://github.com/beebdev/HARU +https://github.com/singularityhub/singularity-hpc +https://github.com/ropensci/natserv +https://github.com/yuhaoran/CUBE +https://github.com/eWaterCycle/jupyterlab_thredds +https://github.com/walaj/svaba +https://github.com/Illumina/pyflow +https://github.com/ropensci/virtuoso +https://github.com/walaj/SeqLib +https://github.com/Keck-DataReductionPipelines/MosfireDRP +https://github.com/BradGreig/21CMMC +https://github.com/biomedia-mira/istn +https://github.com/laristra/flecsph +https://github.com/CPM-project/MCPM +https://github.com/ropensci/scrubr +https://github.com/agurvich/FIRE_studio +https://github.com/tofflemire/saphires +https://github.com/easystats/correlation +https://github.com/labsquare/CutePeaks +https://github.com/gmarcais/Quorum +https://github.com/radio-astro-tools/pvextractor +https://github.com/1054/Crab.Toolkit.michi2 +https://github.com/kkrismer/scansite-tools +https://github.com/xfengnefx/hifiasm-meta +https://github.com/keckert7/codes +https://github.com/dmnfarrell/snpgenie +https://github.com/dgarrimar/sqtlseeker2-nf +https://github.com/ImperialCollegeLondon/R2T2 +https://github.com/soedinglab/hh-suite +https://github.com/luizfelippesr/galmag +https://github.com/SterlingYM/astroPIPS +https://github.com/bfarr/exocartographer +https://github.com/COMBINE-lab/terminus +https://github.com/Mulan-94/smops +https://github.com/NeotomaDB/neotoma2 +https://github.com/ChenfuShi/HiChIP_peaks +https://github.com/NLeSC/eEcology-Annotation-WS +https://github.com/julianreul/mode_behave +https://github.com/rajeshmondal18/MAPS +https://github.com/dylancromer/maszcal +https://github.com/stamatak/AxPcoords.dist +https://github.com/mpound/comb +https://github.com/WangLabTHU/DeSP +https://github.com/ageller/Firefly +https://github.com/xmuyulab/DreamDIA-XMBD +https://github.com/isovic/graphmap +https://github.com/mlinderm/npsv +https://github.com/candebellavita/vkompth +https://github.com/citation-file-format/cff-initializer-javascript +https://github.com/mrc-ide/dust +https://github.com/sanger-pathogens/Bio-Tradis +https://github.com/myinxd/MCRGNet +https://github.com/adrn/pyia +https://github.com/uab-cgds-worthey/quac +https://github.com/yogi-tud/space_gpu +https://github.com/ropensci/xslt +https://github.com/shbhuk/barycorrpy +https://github.com/mtlam/PyPulse +https://github.com/vocalpy/crowsetta +https://github.com/cbrnr/sigviewer +https://github.com/klevis-a/kinematics-vis +https://github.com/mrc-ide/cinterpolate +https://github.com/bio-tools/biotoolsSum +https://github.com/malonge/RagTag +https://github.com/avigan/SPHERE +https://github.com/liuhao-cn/fastSHT +https://github.com/SKA-INAF/caesar-rest +https://github.com/deepsphere/deepsphere-cosmo-tf1 +https://github.com/aranyics/ReDCM +https://github.com/jts/nanopolish +https://github.com/arq5x/lumpy-sv +https://github.com/PacificBiosciences/kineticsTools +https://github.com/mrc-ide/provisionr +https://github.com/rrwick/Deepbinner +https://github.com/rega-cev/virulign +https://github.com/takfung/ResDisMapper +https://github.com/ropensci/cRegulome +https://github.com/QuaCaTeam/quaca +https://github.com/labjg/fibmeasure +https://github.com/ruanjue/wtdbg2 +https://github.com/mc-imperial/gpuverify +https://github.com/JLBLine/WODEN +https://github.com/adriancorrendo/metrica +https://github.com/bwinkel/cygrid +https://github.com/ggobi/ggobi +https://github.com/devanshkv/fetch +https://github.com/parkus/fiducial_flare +https://github.com/mtsch/Ripserer.jl +https://github.com/MikkelSchubert/adapterremoval +https://github.com/katholt/Kleborate +https://github.com/astro-informatics/s2 +https://github.com/henrikju/resolve +https://github.com/gorpipe/gor +https://github.com/deeptools/deepTools +https://github.com/cdw9bf/CompactGroup +https://github.com/cmateu/galstreams +https://github.com/FourierFlows/GeophysicalFlows.jl +https://github.com/kartheikiyer/dense_basis +https://github.com/carpenterphysics/DarkFlux +https://github.com/CouncilDataProject/cookiecutter-cdp-deployment +https://github.com/lsds/SEEP +https://github.com/hippke/Pandora +https://github.com/jpierel14/sntd +https://github.com/yuansh3354/CaSee +https://github.com/igmhub/picca +https://github.com/inrae/RCaNmodel +https://github.com/dkoboldt/varscan +https://github.com/HUST-DataMan/FRMC +https://github.com/ropensci/stplanr +https://github.com/akcochrane/TEfits +https://github.com/NLeSC/boatswain +https://github.com/will-rowe/hulk +https://github.com/broadinstitute/cromwell +https://github.com/zhangjunpeng411/Scan +https://github.com/schochastics/netrankr +https://github.com/yangyongsan-bio/GREAP +https://github.com/ptriska/WavesDash +https://github.com/mtazzari/galario +https://github.com/asgr/ProFuse +https://github.com/waynebhayes/SpArcFiRe +https://github.com/ropensci/chromer +https://github.com/LINNAE-project/SFB-Annotator +https://github.com/tmux/tmux +https://github.com/rksyouyou/SASOM-analysis +https://github.com/Smith42/astroddpm +https://github.com/wdecoster/chopper +https://github.com/Kamuish/archi +https://github.com/KVSlab/VaMPy +https://github.com/HoBeZwe/SphericalScattering.jl +https://github.com/ExaScience/elprep +https://github.com/hope-data-science/tidyfst +https://github.com/christopher-vollmers/C3POa +https://github.com/mgieles/limepy +https://github.com/ExoCTK/exoctk +https://github.com/yaml2sbml-dev/yaml2sbml +https://github.com/FePhyFoFum/phyx +https://github.com/FergusDonnan/Running-Optimal-Average +https://github.com/fchuffar/protopackage +https://github.com/EoRImaging/FHD https://github.com/ImperialCollegeLondon/fractalgenetics +https://github.com/venkateshgopinath/FAlCon-DNS +https://github.com/maayane/catsHTM +https://github.com/teuben/DataComb +https://github.com/entangled/entangled +https://github.com/swagnercarena/ovejero +https://github.com/ShixiangWang/sigminer +https://github.com/bmorris3/aesop +https://github.com/zpliulab/GeoBind +https://github.com/AMReX-Astro/Nyx +https://github.com/tnakazato/priism +https://github.com/OpenDA-Association/OpenDA +https://github.com/pmelsted/pizzly +https://github.com/ebachelet/pyLIMA +https://github.com/pwry/lextes +https://github.com/iraf-community/pyraf +https://github.com/luizfelippesr/magnetizer +https://github.com/zd1/telseq +https://github.com/devitocodes/pyrevolve +https://github.com/brentp/somalier +https://github.com/DorianDepriester/MTEX2Gmsh +https://github.com/andreasmang/claire +https://github.com/smith-chem-wisc/ProteaseGuru +https://github.com/StingraySoftware/HENDRICS +https://github.com/AlexMaraio/WeakLensingQML +https://github.com/r-lib/credentials +https://github.com/easybuilders/easybuild +https://github.com/weizhouUMICH/SAIGE +https://github.com/sinc-lab/miRe2e +https://github.com/mjacob1002/Eir +https://github.com/esperlman/JetCurry +https://github.com/SophieMLV/axionHMcode +https://github.com/SeaIce-Math/SubZero +https://github.com/sonjageorgievska/CClusTera +https://github.com/yangao07/abPOA +https://github.com/jeremysanders/dsdeproj +https://github.com/alexdobin/STAR +https://github.com/julia-wrobel/registr +https://github.com/ropensci/rerddap +https://github.com/Glogobyte/miRGalaxy +https://github.com/Pinlyu3/LRLoop +https://github.com/DEIB-GECO/GeneNetFusion +https://github.com/10XGenomics/bamtofastq +https://github.com/pcubillos/rate https://github.com/astrockragh/Mangrove -https://github.com/grburgess/popsynth -https://github.com/bblodfon/emba -https://github.com/CFSAN-Biostatistics/SeroTools -https://github.com/ropensci/timefuzz -https://github.com/pymc-devs/pymc3 -https://github.com/thomasorb/orbs -https://github.com/dtcc-platform/dtcc-builder -https://github.com/tariqdaouda/CAMAP -https://github.com/vincentvaneylen/k2photometry -https://github.com/gnave/Xgremlin -https://github.com/iraf-community/iraf -https://github.com/supernnova/SuperNNova -https://github.com/ScialdoneLab/MitoHEAR -https://github.com/cwru-pat/cosmograph -https://github.com/bioinfo-ut/PlasmidSeeker -https://github.com/cobilab/RFSC -https://github.com/afarahi/tatter -https://github.com/snystrom/memes -https://github.com/n-claes/legolas -https://github.com/dbosul/cwitools -https://github.com/KerryAM-R/ggVolcanoR -https://github.com/adigenova/wengan -https://github.com/msailer1234/JWST_Simulation -https://github.com/spokenlanguage/platalea -https://github.com/tzhu-bio/UMI-ATAC-seq -https://github.com/tldr-group/taufactor -https://github.com/nworbde/dStar -https://github.com/seshnadathur/Revolver -https://github.com/oneilsh/tidytensor -https://github.com/wmalab/EnHiC -https://github.com/jradavenport/FBEYE -https://github.com/ziotom78/dacapo_calibration -https://github.com/UNSW-CEEM/nempy -https://github.com/sybila/biodivine-aeon-py -https://github.com/biocore/emperor -https://github.com/mrc-ide/individual -https://github.com/LucyMcGowan/tipr -https://github.com/ropensci/gutenbergr -https://github.com/anderslogg/geco -https://github.com/Starlink/starlink -https://github.com/thomgrand/fim-python -https://github.com/exoclime/Helios-r2 +https://github.com/cbio-astar-tools/GeneCloudOmics +https://github.com/xpsi-group/xpsi +https://github.com/horovod/horovod https://github.com/cov-lineages/pangoLEARN -https://github.com/martin3141/spant -https://github.com/ColemanRHarris/mxnorm -https://github.com/cpinte/pymcfost -https://github.com/smsharma/dark-photons-perturbations -https://github.com/mrc-ide/cinterpolate -https://github.com/exosports/MARGE -https://github.com/danxhuber/galclassify -https://github.com/junkoda/sidm-nbody -https://github.com/drzeeshanahmed/JWES-Visual -https://github.com/YSOVAR/YSOVAR -https://github.com/candYgene/siga -https://github.com/martinjameswhite/ZeldovichRecon -https://github.com/ropensci/AntWeb -https://github.com/wbalmer/backtrack -https://github.com/kimpenn/VERSE -https://github.com/dellytools/sansa -https://github.com/mrc-ide/rrq -https://github.com/FCS-analysis/multipletau +https://github.com/ropensci/nodbi https://github.com/bcgsc/NanoSim -https://github.com/radio-astro-tools/pvextractor -https://github.com/ImperialCollegeLondon/pytest_template_application -https://github.com/scotthgn/AGNvar -https://github.com/introlab/opentera -https://github.com/ratt-ru/QuartiCal -https://github.com/kinnala/scikit-fem -https://github.com/AFD-Illinois/ebhlight -https://github.com/DedalusProject/eigentools -https://github.com/ropensci/rgnparser -https://github.com/storyofthewolf/ExoCAM -https://github.com/ahcm/ffindex -https://github.com/Filter-Bubble/e2e-Dutch -https://github.com/prmunday/Immunolyser -https://github.com/rodluger/starry_process -https://github.com/agreenbaum/gsgs -https://github.com/davidkipping/MAH -https://github.com/mriener/gausspyplus -https://github.com/NLeSC/Chemical-Analytics-Platform -https://github.com/gourabghoshroy/MPVNN -https://github.com/tseemann/shovill -https://github.com/arnauqb/Qwind.jl -https://github.com/bmorris3/fleck -https://github.com/Basvanstein/GSAreport -https://github.com/dengzhuo-AI/Real-Fundus -https://github.com/pjcigan/multicolorfits -https://github.com/ropensci/nbaR -https://github.com/ismaelpessa/PyMUSE -https://github.com/MaximeWack/viroCapt -https://github.com/astroboylrx/PLAN -https://github.com/ucam-department-of-psychiatry/camcops -https://github.com/fdebras/ECLIPS3D -https://github.com/Illumina/ExpansionHunterDenovo -https://github.com/ejhigson/dyPolyChord -https://github.com/joe-antognini/kozai -https://github.com/PaulHancock/Robbie -https://github.com/Kushaalkumar-pothula/FLARE +https://github.com/iomega/spec2vec +https://github.com/Kaixhin/Rainbow +https://github.com/r-spatialecology/shar +https://github.com/paumard/cubefit +https://github.com/leonzheng2/efficient-butterfly +https://github.com/hmtabernero/SteParSyn +https://github.com/mne-tools/mne-icalabel +https://github.com/jdidion/atropos +https://github.com/girder/viime +https://github.com/nbellomo/Multi_CLASS +https://github.com/rdpstaff/AlignmentTools +https://github.com/ropensci/rdflib +https://github.com/barbagroup/geoclaw-landspill +https://github.com/lifs-tools/jmzTab-m +https://github.com/vojtech-sidorin/quickclump +https://github.com/shenwei356/kmcp +https://github.com/ucl-exoplanets/TauREx3_public +https://github.com/vterron/lemon +https://github.com/bluenote-1577/sylph +https://github.com/jfwallin/JSPAM +https://github.com/qMRLab/qMRLab +https://github.com/swiftbiosciences/primerclip +https://github.com/SandoghdarLab/PiSCAT +https://github.com/VIB-PSB/MINI-EX +https://github.com/oneilsh/tidytensor +https://github.com/annehutter/polyspectrum +https://github.com/linksmart/thing-directory +https://github.com/GooglingTheCancerGenome/sv-gen +https://github.com/SchedMD/slurm +https://github.com/shinichiroando/sashimi-c https://github.com/Zstone19/pypetal -https://github.com/Pranab-JD/LeXInt -https://github.com/babinyurii/recan -https://github.com/PlanetHunters/tkmatrix -https://github.com/AP6YC/AdaptiveResonance.jl -https://github.com/GalletFlorian/TATOO -https://github.com/citation-file-format/cff-converter-python -https://github.com/NLeSC/nlesc-serverless-boilerplate -https://github.com/ropensci/fulltext +https://github.com/ropensci/mregions +https://github.com/exoclime/VULCAN +https://github.com/farhanferoz/BAMBI +https://github.com/gnave/Xgremlin +https://github.com/caseyjlaw/rtpipe +https://github.com/hpparvi/opents +https://github.com/ScialdoneLab/MitoHEAR +https://github.com/pelahi/TreeFrog +https://github.com/barnesgroupICL/Driftfusion +https://github.com/FRED-2/OptiType +https://github.com/davidgardenier/frbpoppy +https://github.com/SimCab-CHU/ifCNV-R +https://github.com/arhstevens/DarkSage +https://github.com/lamyj/odil +https://github.com/KorfLab/SNAP +https://github.com/henry2004y/Vlasiator.jl +https://github.com/volkamerlab/opencadd +https://github.com/rohinkumar/correlcalc +https://github.com/GWang2022/iGDP +https://github.com/ropensci/rcrossref +https://github.com/MartianColonist/POSEIDON +https://github.com/tholoien/XDGMM +https://github.com/NickSwainston/pulsar_spectra +https://github.com/RosettaCommons/RFDesign +https://github.com/rnikutta/rhocube +https://github.com/lh3/fermi-lite +https://github.com/davi-rodrigues/NAVanalysis +https://github.com/ThomasMBury/ewstools +https://github.com/NielsenBerkeleyLab/sconce +https://github.com/TingMAC/FrMLNet +https://github.com/zavolanlab/PAQR2 +https://github.com/sfarrens/sfof +https://github.com/ELELAB/LipidDyn +https://github.com/QuantumPlasma/SFQEDtoolkit +https://github.com/sjbeckett/localcovid19now +https://github.com/mmp2/megaman +https://github.com/Joost987/MONDPMesh +https://github.com/kboone/avocado +https://github.com/kwkx/IPRP +https://github.com/interactivereport/OmicsView0 +https://github.com/esandford/EightBitTransit +https://github.com/GijsMulders/epos +https://github.com/EcoJulia/SimpleSDMLayers.jl +https://github.com/sambit-giri/BCMemu +https://github.com/sanger-pathogens/Fastaq +https://github.com/ucl-exoplanets/ExoGAN_public +https://github.com/aomlomics/tourmaline +https://github.com/herrsalmi/FConverter +https://github.com/SeamusClarke/FragMent +https://github.com/MicGrasso/bigonlight +https://github.com/epruesse/SINA +https://github.com/spacetelescope/stsdas_stripped +https://github.com/ParkerLab/ataqv +https://github.com/binzhulab/SUITOR +https://github.com/CosmoStat/pmclib +https://github.com/IMB-Computational-Genomics-Lab/scGPS +https://github.com/fzagaria/COpops +https://github.com/maxibor/sam2lca +https://github.com/minzastro/unidam +https://github.com/leotac/joypy +https://github.com/samhforbes/PupillometryR +https://github.com/QingyuLiaib/PLA-MoRe +https://github.com/simonsobs/so_noise_models +https://github.com/equipeGST/RiboDoc +https://github.com/UNSW-CEEM/nempy +https://github.com/ropensci/hydroscoper +https://github.com/Degiacomi-Lab/molearn +https://github.com/Smith42/XDF-GAN +https://github.com/cosimoNigro/agnpy +https://github.com/DistrictDataLabs/yellowbrick +https://github.com/chfeder/turbulence_generator +https://github.com/vpc-ccg/calib +https://github.com/UcarLab/AMULET +https://github.com/ziotom78/dacapo_calibration +https://github.com/vmmunoza/nuHawkHunter +https://github.com/jtksai/PyCOOL +https://github.com/ratt-ru/PyMORESANE +https://github.com/TinkerTools/tinker-hp +https://github.com/auckland-cosmo/PyUltraLight +https://github.com/NLeSC/SalientDescriptor-matlab +https://github.com/piernik-dev/piernik +https://github.com/VarStarDetect/varstardetect +https://github.com/ropensci/bikedata +https://github.com/ratt-ru/rodrigues +https://github.com/gui11aume/starcode +https://github.com/LTLA/basilisk +https://github.com/JoelForamitti/agentpy +https://github.com/marco-oliva/pfp +https://github.com/sandmanns/CopyDetective +https://github.com/AlgoLab/shark +https://github.com/AstroVPK/kali +https://github.com/ctSkennerton/minced +https://github.com/NLeSC/mcfly +https://github.com/dtamayo/reboundx +https://github.com/fjankowsk/scatfit +https://github.com/RitchieLab/hudson +https://github.com/biocore-ntnu/pyranges https://github.com/gerthmicha/wolbachia-mlst -https://github.com/milicolazo/Pyedra -https://github.com/vsbuffalo/scythe -https://github.com/matthiasdemuzere/w2w -https://github.com/DrDaveShaw/INCHEM-Py -https://github.com/AbeelLab/lorikeet -https://github.com/matthewholman/assist -https://github.com/pmlmodelling/nctoolkit -https://github.com/saezlab/PHONEMeS -https://github.com/sibyllema/Fast-Multiscale-Diffusion-on-Graphs -https://github.com/biod/sambamba -https://github.com/farhanferoz/MultiNest -https://github.com/pmelchior/shear-stacking -https://github.com/sjforeman/bskit -https://github.com/yongsukyee/uncertain_blackholemass -https://github.com/HinLeung622/pipes_vis +https://github.com/ropensci/CoordinateCleaner +https://github.com/Dfam-consortium/RepeatModeler +https://github.com/debian-tex/biber +https://github.com/nlesc-nano/insilico-server +https://github.com/DreamCloud-Project/AMALTHEA-Microworkload-Generator https://github.com/JuliaHCI/ADI.jl -https://github.com/lilyminium/psiresp -https://github.com/pybamm-team/liionpack -https://github.com/SterlingYM/astroPIPS -https://github.com/ACTCollaboration/zCluster -https://github.com/chfeder/turbulence_generator -https://github.com/jstjohn/SeqPrep -https://github.com/ropensci/babette -https://github.com/RichardMoot/GrailLight -https://github.com/fumi-github/omicwas -https://github.com/mggg/ecological-inference -https://github.com/leapigufpb/FuzzyClass -https://github.com/AMReX-Astro/Nyx -https://github.com/telatin/qax -https://github.com/ropensci/av -https://github.com/LeandroOrdonez/explora-vr-dash-client -https://github.com/tolkit/telomeric-identifier +https://github.com/gkulkarni/QLF +https://github.com/ksahlin/strobealign +https://github.com/cosmicrays/DRAGON +https://github.com/fermiPy/fermipy +https://github.com/yyZhang14/dbEssLnc +https://github.com/kennethcarrell/ATARRI +https://github.com/ropensci/gutenbergr +https://github.com/aiidateam/kiwipy +https://github.com/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner +https://github.com/duffell/Disco +https://github.com/noraeisner/LATTE +https://github.com/hannorein/rebound +https://github.com/tensorly/viz +https://github.com/mikesmitka/truvot +https://github.com/esoPanda/FTbg +https://github.com/yatiml/yatiml +https://github.com/astrosupriyo/pyTANSPEC +https://github.com/wouterpeere/GHEtool +https://github.com/pymc-devs/pymc3 +https://github.com/tripathi/Atmospheric-Athena +https://github.com/glue-viz/glue +https://github.com/DOnghiaGroup/MGwave +https://github.com/intake/intake +https://github.com/NLeSC/PattyVis +https://github.com/theia-dev/Qiber3D +https://github.com/hsocasnavarro/NICOLE +https://github.com/linneas/condetri +https://github.com/kavir1698/EvoDynamics.jl +https://github.com/meenakshi-kushwaha/mmaqshiny +https://github.com/giswqs/leafmap +https://github.com/STAR-Fusion/STAR-Fusion +https://github.com/PaulHancock/Aegean +https://github.com/simon-prunet/defringe +https://github.com/LindleyLentati/Cobra +https://github.com/tomasstolker/pycrires +https://github.com/compomics/COSS +https://github.com/AlexanderBartholomaeus/smORFer +https://github.com/bradkav/CEvNS +https://github.com/seap-udea/iWander +https://github.com/chasmani/piecewise-regression +https://github.com/spacetelescope/stginga +https://github.com/migueldvb/cine +https://github.com/aobr/gsf +https://github.com/lucian-ilie/DELPHI +https://github.com/ropensci/opencontext +https://github.com/markusbonse/applefy +https://github.com/danhey/maelstrom +https://github.com/PacificBiosciences/FALCON +https://github.com/jydu/maffilter +https://github.com/jmason86/James-s-EVE-Dimming-Index-JEDI +https://github.com/lh3/minimap2 +https://github.com/ExObsSim/Rapoc-public +https://github.com/rvalieris/parallel-fastq-dump +https://github.com/jah1994/PyTorchDIA +https://github.com/ddarriba/prottest3 +https://github.com/ledatelescope/bifrost +https://github.com/danielemichilli/DM_phase +https://github.com/ahmedmoustafa/JAligner +https://github.com/xfangcosmo/2DFFTLog +https://github.com/sylvainprigent/napari-tracks-reader +https://github.com/luntergroup/octopus +https://github.com/FZJ-PGI-12/QAOA.jl +https://github.com/nanoporetech/tombo +https://github.com/tikk3r/lofar-h5plot +https://github.com/EnricoCorsaro/DIAMONDS +https://github.com/DJArmstrong/TransitSOM +https://github.com/Smith42/pix2prof +https://github.com/mrirecon/view +https://github.com/FreBio/komics +https://github.com/NLeSC/fairdatapoint +https://github.com/scikit-image/scikit-image +https://github.com/SSDataLab/vetting +https://github.com/thegenemyers/DAZZ_DB +https://github.com/SchmidtDSE/afscgap +https://github.com/temuller/hostphot +https://github.com/hallamlab/TreeSAPP +https://github.com/sandialabs/pvOps +https://github.com/perfanalytics/pose2sim +https://github.com/HAWinther/MG-PICOLA-PUBLIC +https://github.com/xfcui/onn4arg +https://github.com/jhparkastro/gpcal +https://github.com/cbg-ethz/smallgenomeutilities +https://github.com/ropensci/prism +https://github.com/XSLiuLab/Seq2Neo +https://github.com/mpound/pdrtpy +https://github.com/ropensci/DoOR.functions +https://github.com/alexander-mead/HMcode +https://github.com/edgardomortiz/Captus +https://github.com/tbep-tech/tbeptools +https://github.com/insilicomedicine/GENTRL +https://github.com/ariedel/lacewing +https://github.com/abmantz/lrgs +https://github.com/ropensci/cffr +https://github.com/exosports/BART +https://github.com/eWaterCycle/setup-grpc +https://github.com/johnpaulett/python-hl7 +https://github.com/brian-team/brian2 +https://github.com/JesusTorrado/extrapops +https://github.com/rae-holcomb/SpinSpotter +https://github.com/gagneurlab/drop +https://github.com/exoclime/THOR +https://github.com/bblodfon/emba +https://github.com/cdanielmachado/carveme +https://github.com/chapmanb/bcbio.prioritize +https://github.com/jeaadams/ExoPix +https://github.com/iquasere/UPIMAPI +https://github.com/Filter-Bubble/stroll +https://github.com/LSSTDESC/snmachine +https://github.com/lkreidberg/batman +https://github.com/eltevo/StePS +https://github.com/LCOGT/banzai +https://github.com/alicia-ziying-yang/conTEXT-explorer +https://github.com/eldariont/svim +https://github.com/szwiep/py_SBeLT +https://github.com/bacpop/PopPUNK +https://github.com/esplint/IRACpm +https://github.com/thejackal360/OpenPelt-Public +https://github.com/mbaes/SpheCow +https://github.com/benedictpaten/marginPhase +https://github.com/damonge/schNell +https://github.com/KALMUS-Color-Toolkit/KALMUS +https://github.com/tlancian/bio_cs +https://github.com/getzlab/rnaseqc +https://github.com/erikbern/ann-benchmarks +https://github.com/surhudm/aum +https://github.com/temuller/piscola +https://github.com/danxhuber/galclassify +https://github.com/fastpm/fastpm +https://github.com/EmmanuelSchaan/LensQuEst +https://github.com/fchuffar/dmethr +https://github.com/COMBINE-lab/salmon +https://github.com/BoevaLab/FREEC +https://github.com/inonchiu/ComEst +https://github.com/richteague/disksurf +https://github.com/galaxy001/pirs +https://github.com/hamers/secularmultiple +https://github.com/gbernstein/pixmappy +https://github.com/davidkipping/ECCSAMPLES +https://github.com/Jesper-Karsten/MBASC +https://github.com/dazhwu/pydynpd +https://github.com/eliotayache/GAMMA +https://github.com/zhoux85/scAdapt +https://github.com/saeyslab/PeacoQC +https://github.com/esa/pagmo2-paper +https://github.com/FCS-analysis/PyScanFCS +https://github.com/arq5x/grabix +https://github.com/eggplantbren/Exoplanet +https://github.com/wiederm/transformato +https://github.com/DebduttaPaul/luminosity_function_of_sGRBs +https://github.com/pnnl/interflow +https://github.com/ialopezt/GalLenspy +https://github.com/eucp-project/atlas +https://github.com/samb8s/PsrPopPy +https://github.com/MMV-Lab/mmv_im2im +https://github.com/3D-e-Chem/knime-python-wrapper +https://github.com/algo-cancer/CAMMiQ +https://github.com/musevlt/origin +https://github.com/simoncasassus/ConeRot +https://github.com/bommert/stabm +https://github.com/tornede/py_experimenter +https://github.com/ropensci/microdemic +https://github.com/zjupgx/modig +https://github.com/jacobblum/simDRIFT +https://github.com/Dfupa/meTAline +https://github.com/ec363/fpcountr +https://github.com/a-griffiths/AutoSpec +https://github.com/nialov/fractopo https://github.com/samtools/htslib -https://github.com/realfastvla/realfast -https://github.com/exomishra/kobe -https://github.com/astro-informatics/DarkMappy -https://github.com/zd1/telseq +https://github.com/candYgene/abg-ld +https://github.com/AFD-Illinois/iharm3d +https://github.com/mchalela/GriSPy +https://github.com/Gabaldonlab/perSVade +https://github.com/ropensci-archive/rodev +https://github.com/ropensci/pendulum +https://github.com/rhenkin/visxhclust +https://github.com/bcgsc/arcs +https://github.com/toros-astro/corral +https://github.com/B-UMMI/chewBBACA +https://github.com/bio-ontology-research-group/deepgoplus +https://github.com/eXtremeGravityInstitute/QuickCBC +https://github.com/Gaius-Augustus/GALBA +https://github.com/CGATOxford/UMI-tools +https://github.com/andreaminio/HaploSync +https://github.com/bradkav/BlackHolesDarkDress +https://github.com/micahvista/MAMnet +https://github.com/arvados/arvados +https://github.com/astroboylrx/PLAN +https://github.com/mpeel/fastcc +https://github.com/TeamLEGWORK/LEGWORK +https://github.com/intelligent-soft-robots/o80 +https://github.com/roban/CosmoloPy +https://github.com/ropensci/treedata.table +https://github.com/Sydney-Informatics-Hub/geodata-harvester +https://github.com/Kuifje02/vrpy +https://github.com/ropensci/aorsf +https://github.com/hippke/PyOSE +https://github.com/atmos-cloud-sim-uj/PyMPDATA +https://github.com/cole-trapnell-lab/cufflinks +https://github.com/kbarbary/nestle +https://github.com/hombit/freddi +https://github.com/kibokov/GRUMPY +https://github.com/jeremysanders/contbin +https://github.com/tlverse/hal9001 +https://github.com/chrisaberson/BetterReg +https://github.com/JacksonBurns/astartes +https://github.com/cpinte/pymcfost +https://github.com/dansarie/sboxgates +https://github.com/RETURN-project/BenchmarkRecovery +https://github.com/yupidevs/pactus +https://github.com/genomehubs/goat-cli +https://github.com/ryanhausen/fitsmap +https://github.com/ropensci/rAvis +https://github.com/snad-space/zwad +https://github.com/micbia/SubgridClumping +https://github.com/SHTOOLS/SHTOOLS +https://github.com/widdowquinn/pyani +https://github.com/nanograv/PINT +https://github.com/halomod/halomod +https://github.com/m-a-d-n-e-s-s/madness +https://github.com/ropensci/readODS +https://github.com/CadenArmstrong/simuTrans +https://github.com/telatin/seqfu2 +https://github.com/eggplantbren/DNest4 +https://github.com/tvwenger/hii-region-kinematics +https://github.com/teuben/QAC +https://github.com/cbg-ethz/shorah +https://github.com/4dn-dcic/pairix +https://github.com/richteague/bettermoments +https://github.com/dtcc-platform/dtcc-builder +https://github.com/xiaochuanle/MECAT2 +https://github.com/fair-workflows/nanopub +https://github.com/epfl-radio-astro/PINION +https://github.com/dfki-ric-underactuated-lab/torque_limited_simple_pendulum +https://github.com/tpospisi/cdetools +https://github.com/NeuralEnsemble/elephant +https://github.com/ropensci/crul +https://github.com/eelregit/mcfit +https://github.com/OncoRNALab/CiLiQuant +https://github.com/ropensci/mcbette +https://github.com/deeptools/deeptools_intervals +https://github.com/lutteropp/NetRAX +https://github.com/q1cui/discourseGT +https://github.com/alejostark/phase_space_cosmo_fisher +https://github.com/Jammy2211/PyAutoGalaxy +https://github.com/mbillingr/libgdf +https://github.com/iric-soft/km +https://github.com/klee/klee +https://github.com/ropensci/rebird +https://github.com/travisseymour/EPICpy +https://github.com/brentp/nim-lapper +https://github.com/CajoterBraak/demc2 +https://github.com/opimwue/ddop +https://github.com/fabiopardo/qmap +https://github.com/dgbowl/yadg +https://github.com/wvanzeist/riroriro +https://github.com/marius311/pypico +https://github.com/aabdurrouf/piXedfit +https://github.com/Trovemaster/TROVE +https://github.com/javicarron/mtneedlet +https://github.com/ropensci/handlr +https://github.com/CoolWorlds/ExoPriors +https://github.com/johannesulf/dsigma +https://github.com/RuthAngus/GProtation +https://github.com/Singh-Lab/DeMaSk +https://github.com/ropensci/rentrez +https://github.com/shenwei356/unikmer +https://github.com/sagepublishing/rejected_article_tracker_pkg +https://github.com/mkelley/calviacat +https://github.com/KVSlab/turtleFSI +https://github.com/Jonathanfreundlich/CuspCore +https://github.com/ropensci/charlatan +https://github.com/epiforecasts/covidregionaldata +https://github.com/phineasng/DECODE +https://github.com/gogetdata/ggd-utils +https://github.com/WMD-group/SMACT +https://github.com/DEIB-GECO/CRIS_single-sample +https://github.com/ropensci/phylogram +https://github.com/libdynd/dynd-python +https://github.com/BioHPC/MegaD +https://github.com/baxmittens/VTUFileHandler.jl +https://github.com/jeremysanders/ggm +https://github.com/Music-and-Culture-Technology-Lab/omnizart +https://github.com/fenderglass/Flye +https://github.com/andycasey/sick +https://github.com/compomics/DeepLC +https://github.com/dirac-institute/asterogap +https://github.com/ericmandel/funtools +https://github.com/wdecoster/NanoPlot +https://github.com/teamPSG/kNN_Sleep_Scorer_kNNSS +https://github.com/temken/DaMaSCUS +https://github.com/miguelcarcamov/gpuvmem +https://github.com/kboone/parsnip +https://github.com/BioGenies/AMPBenchmark +https://github.com/CyclotronResearchCentre/bidsme +https://github.com/guynir42/radon +https://github.com/zhouzilu/DENDRO +https://github.com/pyranges/pyrle +https://github.com/dentalfloss1/transients-simulations +https://github.com/ropensci/slopes +https://github.com/cobilab/RFSC +https://github.com/CDSP-SCPO/WPSS-for-ESS-webpanel +https://github.com/florian-lienhard/MM-LSD +https://github.com/Kingsford-Group/scallop +https://github.com/EvolBioInf/andi +https://github.com/WelbornGroup/ELECTRIC +https://github.com/glass-dev/glass +https://github.com/mikessh/oncofuse +https://github.com/MiguelEA/nudec_BSM +https://github.com/eead-csic-compbio/get_homologues +https://github.com/KathrynJones1/catwoman +https://github.com/gt1/bambamc +https://github.com/csdms/bmi +https://github.com/alekseyzimin/ufasta +https://github.com/ryokbys/nap +https://github.com/ropensci/git2r +https://github.com/thegenemyers/DAMAPPER +https://github.com/jfalconbarroso/BAYES-LOSVD +https://github.com/radio-astro-tools/uvcombine +https://github.com/auckland-cosmo/defrost-mpi +https://github.com/ronnyerrmann/HiFLEx +https://github.com/gperezs/StarcNet +https://github.com/benmontet/f3 +https://github.com/rychallener/theresa +https://github.com/ghislainv/forestatrisk +https://github.com/bradkav/EarthScatterLikelihood +https://github.com/ImperialCollegeLondon/django-drf-filepond +https://github.com/timchurches/NetEpi-Analysis +https://github.com/aasensio/hazel +https://github.com/cog-imperial/GPdoemd +https://github.com/cmillion/gPhoton +https://github.com/peikuan/WBBC +https://github.com/winni2k/abeona https://github.com/drcandacemakedamoore/cleanX -https://github.com/Merck/pkglite -https://github.com/brentp/cigar -https://github.com/neuroneural/brainchop -https://github.com/gtayana/CVRMS -https://github.com/ropensci/photosearcher -https://github.com/Pithikos/C-Thread-Pool -https://github.com/brinckmann/montepython_public -https://github.com/sfarrens/sfof -https://github.com/JoeMcEwen/FAST-PT -https://github.com/hall-lab/speedseq -https://github.com/yiling0210/APIR -https://github.com/hishamhm/htop -https://github.com/alexander-mead/HMcode -https://github.com/qMRLab/qMRLab -https://github.com/ajwheeler/Korg.jl -https://github.com/bcgsc/tigmint -https://github.com/afeinstein20/stella -https://github.com/niemasd/CoaTran -https://github.com/HITS-AIN/PINK -https://github.com/ridgelab/ExtRampOnline -https://github.com/raspishake/rsudp -https://github.com/DataBiosphere/wdl-parsers -https://github.com/CosmoStatGW/MGCosmoPop -https://github.com/ropensci/gitignore -https://github.com/3D-e-Chem/knime-python-node-archetype -https://github.com/phac-nml/staramr -https://github.com/RomainFeron/mwga-utils -https://github.com/mzechmeister/viper +https://github.com/cog-imperial/suspect +https://github.com/ICESat2-SlideRule/paper +https://github.com/barentsen/k2flix +https://github.com/Extraweich/homopy +https://github.com/jczarnowski/DeepFactors +https://github.com/ropensci/rfigshare +https://github.com/keatonb/TESS_PRF +https://github.com/davidemms/OrthoFinder +https://github.com/carnotresearch/cr-sparse +https://github.com/bd-j/prospector +https://github.com/CliMA/Oceananigans.jl +https://github.com/ABM4ALL/Melodie +https://github.com/EcoJulia/EcologicalNetworks.jl +https://github.com/fmichel/MaDKit +https://github.com/mfem/mfem +https://github.com/wdecoster/nanostat +https://github.com/linnarsson-lab/loompy +https://github.com/jhayer/baargin +https://github.com/fair-data/fairdatapoint-client +https://github.com/ropensci/staypuft +https://github.com/upb-lea/openmodelica-microgrid-gym +https://github.com/mrc-ide/PlasmoMAPI +https://github.com/ropensci/oai +https://github.com/latrop/DECA +https://github.com/oscaribv/exotrending +https://github.com/teoxxx/rlos +https://github.com/uwssg/APS +https://github.com/bregaldo/pywst +https://github.com/labsyspharm/minerva-story +https://github.com/oscaribv/citlalicue +https://github.com/tloredo/CUDAHM +https://github.com/mwvgroup/pwv_kpno +https://github.com/somefunAgba/NLSIG-COVID19Lab +https://github.com/BackofenLab/IntaRNA +https://github.com/ablab/TandemTools +https://github.com/brandonckelly/carma_pack +https://github.com/icecube/FIRESONG +https://github.com/nickfarrow/GalacticDNSMass +https://github.com/snugel/cas-offinder +https://github.com/sncosmo/sncosmo +https://github.com/jfarek/alignstats +https://github.com/HadrienG/InSilicoSeq +https://github.com/enveda/RPath +https://github.com/3D-e-Chem/tycho-knime-node-archetype +https://github.com/dipol-uf/DIPOL-UF +https://github.com/hablabx/rfast +https://github.com/nlesc-ave/ave-rest-service +https://github.com/timstaley/voevent-parse +https://github.com/HEML/HEML +https://github.com/atzberg/mlmod +https://github.com/gxiaolab/scAllele https://github.com/ropensci/outsider.devtools -https://github.com/snad-space/zwad -https://github.com/kjschmidlab/GGoutlieR -https://github.com/galsci/pysm -https://github.com/ERA-URBAN/wrfpy -https://github.com/optimusmoose/jsms -https://github.com/fakedrtom/oncogemini -https://github.com/korcsmarosgroup/CytokineLink -https://github.com/ExoCTK/exoctk -https://github.com/PathwayCommons/grounding-search -https://github.com/simple-crypto/SCALib -https://github.com/jrenaud90/TidalPy -https://github.com/ropensci/weathercan -https://github.com/bregaldo/pywst -https://github.com/mdlreyes/void-dwarf-analysis -https://github.com/light-curve/light-curve -https://github.com/liuhong-jia/scAnno -https://github.com/BorgwardtLab/simbsig -https://github.com/ropensci/stantargets -https://github.com/teoxxx/nemiss_pbl -https://github.com/parklab/LiRA -https://github.com/dolfin-adjoint/pyadjoint -https://github.com/temken/DarkARC -https://github.com/szpiech/selscan -https://github.com/ramadatta/CPgeneProfiler -https://github.com/stamatak/AxPcoords.dist -https://github.com/rvaser/thread_pool -https://github.com/nhejazi/haldensify -https://github.com/Nico-Curti/rFBP -https://github.com/mrc-ide/covid19-forecasts-orderly -https://github.com/nlesc-nano/insilico-server -https://github.com/Illumina/pyflow -https://github.com/RemoteSensingTools/vSmartMOM.jl -https://github.com/coljac/sensie -https://github.com/mbursa/sim5 -https://github.com/onnela-lab/beiwe-backend -https://github.com/oschwengers/referenceseeker -https://github.com/flintproject/Flint -https://github.com/htjb/globalemu -https://github.com/tylertrimble/viswaternet -https://github.com/abonaldi/TRECS -https://github.com/lkreidberg/batman -https://github.com/SoFiA-Admin/SoFiA-2 -https://github.com/stedolan/jq -https://github.com/ImperialCollegeLondon/adam -https://github.com/maserlib/ExPRES -https://github.com/ropensci/parzer +https://github.com/aalhossary/pyemgpipeline +https://github.com/astrostat/BASCS +https://github.com/brentp/gsort +https://github.com/sanger-pathogens/Artemis +https://github.com/mswzeus/TargetNet +https://github.com/fenderglass/Ragout +https://github.com/isakro/shoredate +https://github.com/PaulMcMillan-Astro/GalPot +https://github.com/podondra/bayesian-sznet +https://github.com/frank1010111/bluebonnet +https://github.com/gmarcais/Jellyfish +https://github.com/ICRAR/shark +https://github.com/anuwu/GOTHIC +https://github.com/tschad/pycelp +https://github.com/ropensci/AntWeb +https://github.com/laurazara/IgIDivA +https://github.com/GooglingTheCancerGenome/sv-callers +https://github.com/jpober/21cmSense +https://github.com/drphilmarshall/Pangloss +https://github.com/villrv/SuperRAENN +https://github.com/gem-pasteur/macsyfinder +https://github.com/mrteetoe/HOI +https://github.com/kolikem/loma +https://github.com/pybel/bel-resources +https://github.com/seawander/DebrisDiskFM +https://github.com/justyncw/STAR_MELT +https://github.com/oliverphilcox/RascalC +https://github.com/jradavenport/FBEYE +https://github.com/wdecoster/nanolyse +https://github.com/ajwheeler/Korg.jl +https://github.com/comprna/reorientexpress +https://github.com/kyleaoman/martini +https://github.com/sebastien-plutniak/archeoviz +https://github.com/MAnalytics/opitools +https://github.com/davemlz/eemont +https://github.com/ropensci-archive/arresteddev +https://github.com/jamesaird/FAST +https://github.com/sciris/sciris +https://github.com/dixonlab/hic_breakfinder +https://github.com/FlowModelingControl/flowtorch +https://github.com/RamanLab/iCOMIC +https://github.com/fair-workflows/NanopubJL +https://github.com/spyder-ide/spyder +https://github.com/KeplerGO/kadenza +https://github.com/thomasdenecker/START-R +https://github.com/GATB/gatb-core +https://github.com/wpb-astro/MCSED +https://github.com/ropensci/jsonld +https://github.com/ropensci/piggyback +https://github.com/matchms/matchms +https://github.com/NiallJeffrey/DeepMass +https://github.com/ropensci/rotl +https://github.com/AarhusCosmology/connect_public +https://github.com/trygvrad/DF-XRM_viz +https://github.com/ropensci/nasapower +https://github.com/RadioAstronomySoftwareGroup/pyuvdata +https://github.com/ropensci/assertr +https://github.com/nasa/simupy-flight +https://github.com/liniguez/Insplico_simulations +https://github.com/timchurches/NetEpi-Collection +https://github.com/JetBrains-Research/spbla +https://github.com/rpetit3/fastq-dl +https://github.com/daniellefenech/SERPent +https://github.com/jnktsj/DNApi +https://github.com/sambit-giri/BCemu +https://github.com/bradkav/WIMpy_NREFT +https://github.com/gear-genomics/tracy +https://github.com/lsncibb/microbiomeGWAS +https://github.com/phenomecentre/nPYc-Toolbox +https://github.com/rhysf/HaplotypeTools +https://github.com/exoplanet-dev/exoplanet +https://github.com/quinlanW/dbMisLoc +https://github.com/jkbonfield/crumble +https://github.com/mdruett/COCOPLOT +https://github.com/ZhenjiangFan/DAG-deepVASE +https://github.com/NLESC-JCER/Fortran_Davidson +https://github.com/sylabs/singularity +https://github.com/GATB/simka +https://github.com/EliseJ/astroABC +https://github.com/STEllAR-GROUP/hpx +https://github.com/kdm9/libqcpp +https://github.com/martinsparre/XSHPipelineManager +https://github.com/grburgess/popsynth +https://github.com/telatin/qax +https://github.com/adigenova/wengan +https://github.com/NLeSC/noodles +https://github.com/pmelchior/epsnoise +https://github.com/chapmanb/bcbb +https://github.com/v-morello/iqrm +https://github.com/wanpinglee/MOSAIK +https://github.com/SWAT-Sheffield/SAC +https://github.com/3D-e-Chem/knime-testflow +https://github.com/ropensci/fauxpas +https://github.com/ahmedmagds/GNUVID +https://github.com/heuermh/dishevelled-bio +https://github.com/cancerit/alleleCount https://github.com/PacificBiosciences/pbbioconda -https://github.com/radifar/PyPLIF-HIPPOS -https://github.com/hamers/tpi -https://github.com/robashaw/libecpint -https://github.com/NLeSC-GO-common-infrastructure/marzipan -https://github.com/awsteiner/bamr -https://github.com/aarondotter/iso -https://github.com/achael/eht-imaging -https://github.com/GeneDx/scramble -https://github.com/jalombar/starsmasher -https://github.com/DeepRank/Deeprank-GNN -https://github.com/minkailin/stratsi -https://github.com/YeoLab/clipper -https://github.com/pierrehoudayer/RUBIS +https://github.com/odelaneau/shapeit4 +https://github.com/hungyipu/Odyssey +https://github.com/dh4gan/taktent +https://github.com/NiallJeffrey/BornRaytrace +https://github.com/ropensci/beastier +https://github.com/ekg/smithwaterman +https://github.com/ropensci/citecorp +https://github.com/rhayes777/PyAutoFit +https://github.com/ropensci/tacmagic +https://github.com/HannahMDoherty/ChemGAPP +https://github.com/maserlib/ExPRES +https://github.com/fair-software/fairtally +https://github.com/bsafdi/stellarWakes +https://github.com/google/caliban +https://github.com/soichiro-hattori/unpopular +https://github.com/tbisbas/PDFchem +https://github.com/kiyo-masui/bitshuffle +https://github.com/UCBerkeleySETI/turbo_seti +https://github.com/CDSP-SCPO/metadata-middleware +https://github.com/evanoconnor/GR1D +https://github.com/cieslar/Indri +https://github.com/nickelnine37/pykronecker +https://github.com/fast-data-transfer/fdt +https://github.com/ChengF-Lab/AOPEDF https://github.com/backyardworlds/wiseview -https://github.com/KBNLresearch/ochre -https://github.com/qtltools/qtltools -https://github.com/cbg-ethz/smallgenomeutilities -https://github.com/phillippro/pexo -https://github.com/ulebreui/shark -https://github.com/emrecdem/emo-spectre -https://github.com/natashabatalha/picaso +https://github.com/genotoul-bioinfo/dgenies +https://github.com/bolverk/huji-rich +https://github.com/Gabaldonlab/karyon +https://github.com/ropensci/mapscanner https://github.com/icecube/toise -https://github.com/DReichLab/EIG -https://github.com/ropensci/camsRad -https://github.com/upb-lea/openmodelica-microgrid-gym -https://github.com/facom/BHMcalc -https://github.com/fulcrumgenomics/fgbio -https://github.com/tidymodels/stacks -https://github.com/ablab/TandemTools -https://github.com/surf-eds/one-button-compute -https://github.com/ntoles/tristan-mp-pitp -https://github.com/alekseyzimin/ufasta -https://github.com/moustakas/iSEDfit -https://github.com/ejeschke/ginga -https://github.com/oscaribv/pyaneti -https://github.com/grazianoucci/cosmic_variance -https://github.com/dkoslicki/TAMPA -https://github.com/enthought/vpsearch -https://github.com/caseyjlaw/tpipe -https://github.com/tbronzwaer/raptor -https://github.com/LiShuTJ/NDNet -https://github.com/Biomedical-Imaging-Group/Steer-n-Detect -https://github.com/TeamPerie/CellDestiny -https://github.com/jdcphysics/validation -https://github.com/katholt/srst2 -https://github.com/sherpa-deproject/deproject -https://github.com/SMTG-UCL/ShakeNBreak -https://github.com/SeamusClarke/RJplots -https://github.com/lanl/scico -https://github.com/NickMilsonPhysics/BinaryStarSolver -https://github.com/guynir42/radon -https://github.com/ropensci/allodb -https://github.com/clauswilke/PeptideBuilder -https://github.com/easybuilders/easybuild -https://github.com/soedinglab/plass -https://github.com/3d-pli/fastpli -https://github.com/SeamusClarke/FragMent -https://github.com/seqcode/allo -https://github.com/timoast/signac -https://github.com/mneeleman/qubefit -https://github.com/beckermr/calclens -https://github.com/online-behaviour/machine-learning -https://github.com/chrisaberson/BetterReg -https://github.com/mwoodbri/MRIdb -https://github.com/benmontet/f3 -https://github.com/mrteetoe/HOI +https://github.com/TRASAL/psrdada-python +https://github.com/BobAubouin/Python_Anesthesia_Simulator +https://github.com/smandal97/Sprout +https://github.com/nye17/javelin +https://github.com/jiahecui/SenAOReFoc +https://github.com/krober10nd/SeismicMesh +https://github.com/biocore/emperor +https://github.com/jakeret/tf_unet +https://github.com/DochtermannLab/G-PopComparison +https://github.com/erling6232/imagedata +https://github.com/brunettsp/myosothes +https://github.com/brinckmann/montepython_public +https://github.com/jo276/EvapMass +https://github.com/healytwin1/HISS +https://github.com/husonlab/jloda +https://github.com/JonasRieger/ldaPrototype +https://github.com/NLeSC/cptm +https://github.com/dpryan79/MethylDackel +https://github.com/msailer1234/JWST_Simulation +https://github.com/shaniAmare/long_read_tools +https://github.com/MichelleLochner/astronomaly +https://github.com/phillippro/pexo +https://github.com/bmoster/emerge +https://github.com/bulik/ldsc +https://github.com/biofold/PhD-SNPg +https://github.com/viromelab/tracespipe +https://github.com/ModellingWebLab/chaste-codegen +https://github.com/OnroerendErfgoed/atramhasis +https://github.com/Shyentist/fish-r-man +https://github.com/jonathansick/skyoffset +https://github.com/franciscovillaescusa/Pylians https://github.com/Magritte-code/Magritte -https://github.com/rroyaute/h2_breeders_equation -https://github.com/gt1/bambamc -https://github.com/ParisAstronomicalDataCentre/OPUS -https://github.com/federicomarulli/CosmoBolognaLib +https://github.com/AA-ALERT/Dedispersion +https://github.com/MaximeWack/viroCapt +https://github.com/kerkelae/disimpy +https://github.com/firedrakeproject/gusto +https://github.com/smirarab/sepp +https://github.com/tariqdaouda/CAMAP +https://github.com/catherinezucker/radfil +https://github.com/skiehl/wwz +https://github.com/Planet-AI-GmbH/tfaip +https://github.com/biomed-AI/GraphBepi +https://github.com/ncbi/SKESA +https://github.com/johentsch/ms3 +https://github.com/ywx649999311/vizic +https://github.com/Chandra-MARX/marxs https://github.com/fruzsinaagocs/oscode -https://github.com/james-m-osborn/astrosat -https://github.com/Higgins00/TESS-Localize -https://github.com/HHTpy/HHTpywrapper -https://github.com/JuliaOcean/PlanktonIndividuals.jl -https://github.com/reneshbedre/bioinfokit -https://github.com/FourierFlows/GeophysicalFlows.jl -https://github.com/mbaes/SpheCow -https://github.com/nlesc-nano/CAT -https://github.com/TRASAL/psrdada-python -https://github.com/galaxyproject/galaxy-lib -https://github.com/dirac-institute/asterogap -https://github.com/bcgsc/ntCard -https://github.com/ChristopherWilks/megadepth -https://github.com/oliverphilcox/Spectra-Without-Windows -https://github.com/iraf-community/pyraf -https://github.com/a-slide/pycoQC -https://github.com/logological/gpp -https://github.com/facom/tidev -https://github.com/ropensci/rnaturalearthdata +https://github.com/agsreejith/CONTROL +https://github.com/cosmo-ethz/seek +https://github.com/WorkflowConversion/CTDConverter +https://github.com/ladsantos/flatstar +https://github.com/PengyiZhang/DRR4Covid +https://github.com/yuliang419/Astronet-Triage +https://github.com/WBK-Robotics/pybullet_industrial +https://github.com/EigenDev/simbi +https://github.com/mlaparie/sigh +https://github.com/ropensci/outsider +https://github.com/dfm/ketu +https://github.com/champsproject/ldds +https://github.com/morispi/LRez +https://github.com/ropensci/randgeo +https://github.com/jradcliffe5/multi_self_cal +https://github.com/christophmschaefer/miluphcuda +https://github.com/PDB-REDO/libcifpp +https://github.com/JuliaQX/QXTools.jl +https://github.com/hamers/tpi +https://github.com/naonori/hitomi +https://github.com/LiShuTJ/NDNet +https://github.com/sib-swiss/pftools3 +https://github.com/demorest/nanopipe +https://github.com/sybila/biodivine-aeon-py +https://github.com/spiketools/spiketools +https://github.com/li-shaochuan/SEDIM +https://github.com/BU-ISCIII/plasmidID +https://github.com/dondi/GRNsight +https://github.com/cdominik/optool +https://github.com/PDB-REDO/libpdb-redo +https://github.com/xenon-middleware/xenon-cli +https://github.com/astrobrent/mappings +https://github.com/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP +https://github.com/ropensci/rfema +https://github.com/radio1988/OneStopRNAseq +https://github.com/PNNL-m-q/mza +https://github.com/Xia-Yijie/Xponge +https://github.com/shikhar249/OnionMHC +https://github.com/shadden/celmech +https://github.com/genostats/LowKi +https://github.com/VBlesius/RHRT +https://github.com/Ouranosinc/xclim +https://github.com/bencebeky/spotrod +https://github.com/pavolgaj/OCFit +https://github.com/jts/sga +https://github.com/tomasstolker/ARTES +https://github.com/rajewsky-lab/dropbead +https://github.com/surhudm/savitzky_golay_with_errors +https://github.com/MD-Studio/cerise +https://github.com/biosimulations/Biosimulations +https://github.com/ryneches/SuchTree +https://github.com/keflavich/HiGal_SEDfitter +https://github.com/zblz/naima +https://github.com/Blosc/c-blosc +https://github.com/ncbi/igblast https://github.com/galkintool/galkin -https://github.com/ICAMS/strucscan -https://github.com/creaneroDIAS/beamModelTester -https://github.com/jeffdaily/parasail -https://github.com/magnusmanske/snpomatic -https://github.com/jeremysanders/contbin -https://github.com/tseemann/snippy -https://github.com/rhenkin/visxhclust -https://github.com/asgr/ProFuse -https://github.com/FRED-2/OptiType -https://github.com/nrao/UniPOPS -https://github.com/csmsoftware/IMPaCTS -https://github.com/matteozennaro/reps -https://github.com/christopherburke/tess-point -https://github.com/UK-Digital-Heart-Project/4Dsegment -https://github.com/vanheeringen-lab/gimmemotifs -https://github.com/eWaterCycle/ewatercycle -https://github.com/davidkipping/MACULA -https://github.com/obreschkow/dftools -https://github.com/Ensembl/WiggleTools -https://github.com/TheFischerLab/FLEXR -https://github.com/AarhusCosmology/connect_public -https://github.com/pynbody/tangos -https://github.com/ropensci/phylogram -https://github.com/nmslib/hnswlib -https://github.com/MoreiraLAB/or -https://github.com/tariks/peakachu -https://github.com/marziarivi/RadioLensfit2 -https://github.com/msyazwanfaid/hilalpy -https://github.com/johannes-titz/cofad -https://github.com/simon-prunet/defringe -https://github.com/tbep-tech/tbeptools -https://github.com/YuLab-SMU/treeio -https://github.com/rrwick/Porechop -https://github.com/jakelever/civicmine -https://github.com/orcasgit/python-fitbit -https://github.com/jonzink/EDI_Vetter_unplugged -https://github.com/roban/CosmoloPy -https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Objects -https://github.com/cconroy20/alf -https://github.com/ropensci/stplanr -https://github.com/JianjunTan-Beijing/LPI-CSFFR -https://github.com/sebhaan/geobo -https://github.com/yaml2sbml-dev/yaml2sbml -https://github.com/nlesc-dirac/sagecal -https://github.com/mwaskom/seaborn -https://github.com/FergusDonnan/PAHDecomp -https://github.com/doriancazeneuve/ODNet -https://github.com/aberer/RogueNaRok -https://github.com/JeffLCoughlin/skye -https://github.com/ejikeugba/serp -https://github.com/sdnjly/WSDL-AD -https://github.com/vrodgom/statmorph -https://github.com/DidierMurilloF/FielDHub -https://github.com/ropensci/rmangal -https://github.com/espnet/espnet -https://github.com/low-sky/cprops -https://github.com/exoclime/HELA -https://github.com/bedops/bedops -https://github.com/achaikova/frbmclust -https://github.com/CosmoStat/CosmoPMC -https://github.com/DGtal-team/DGtal -https://github.com/rbturnbull/ausdex -https://github.com/MNiwano/Eclaire -https://github.com/heatherprince/cosmoped -https://github.com/biolab-unige/nifti2dicom -https://github.com/NBISweden/AGAT -https://github.com/guangtunbenzhu/SetCoverPy -https://github.com/NLeSC/eSalsa-MPI -https://github.com/anwarbio/bioassays -https://github.com/subisarkar/JexoSim -https://github.com/planck-npipe/lollipop -https://github.com/PMBio/peer -https://github.com/ropensci/natserv -https://github.com/rauschenberger/transreg -https://github.com/xfengnefx/hifiasm-meta -https://github.com/dnafinder/uroccomp -https://github.com/jaimedelacruz/stic -https://github.com/mlr-org/mcboost -https://github.com/OMBoersma/DeepGlow -https://github.com/nickelnine37/pykronecker -https://github.com/ArtRand/signalAlign -https://github.com/mrtommyb/ktransit -https://github.com/athulpg007/AMAT -https://github.com/HCGB-IGTP/XICRA -https://github.com/MAnalytics/akmedoids -https://github.com/macrocosme/time_domain_astronomy_sandbox -https://github.com/cblakeastro/intensitypower -https://github.com/snugel/cas-offinder -https://github.com/SWIFTSIM/swiftsimio -https://github.com/genome/bam-readcount -https://github.com/ntveem/sterile-dm -https://github.com/3D-e-Chem/kripodb -https://github.com/tum-esm/pyra -https://github.com/OpenWaterAnalytics/EPyT -https://github.com/medvedevgroup/varmatch -https://github.com/reggiebernardo/PTAfast -https://github.com/FePhyFoFum/phyx -https://github.com/hues-platform/cesar-p-core -https://github.com/forceflow1049/PhAst -https://github.com/cog-imperial/suspect -https://github.com/3D-e-Chem/knime-gpcrdb -https://github.com/CheerfulUser/TESSreduce -https://github.com/schlafly/crowdsource -https://github.com/solerjuan/magnetar -https://github.com/ropensci/aorsf -https://github.com/ahoward-cf/ppmap -https://github.com/codemeleon/seqPanther -https://github.com/c-white/blacklight -https://github.com/Crompulence/cpl-library -https://github.com/SchedMD/slurm -https://github.com/q1cui/discourseGT -https://github.com/ImperialCollegeLondon/covid19model -https://github.com/USNavalResearchLaboratory/eispac -https://github.com/ropensci/taxa -https://github.com/dixonlab/hic_breakfinder -https://github.com/dwkim78/pdtrend -https://github.com/umbralcalc/helmpy -https://github.com/fair-workflows/fairworkflows -https://github.com/Gabaldonlab/jloh -https://github.com/candYgene/abg-ld -https://github.com/ropensci/ots -https://github.com/jakeret/tf_unet -https://github.com/jgrembi/riskCommunicator -https://github.com/flosalbizziae/kataegis -https://github.com/toshiyan/cmblensplus -https://github.com/kingyin3613/ringspy +https://github.com/chenjj2/forecaster +https://github.com/ropensci/brranching +https://github.com/ropensci/plotly +https://github.com/mslonina/Mechanic +https://github.com/hildebra/LCA +https://github.com/1313e/CMasher +https://github.com/ropensci/UCSCXenaTools +https://github.com/ccsosa/GOCompare +https://github.com/vidakris/flatwrm +https://github.com/tidymess-code/tidymess +https://github.com/rafaeleufrasio/lightning +https://github.com/egstrom/cluster-in-a-box +https://github.com/elkebir-group/Jumper +https://github.com/hasindu2008/slow5tools +https://github.com/ncbi/ncbi-vdb +https://github.com/Hi-COLACode/Hi-COLA +https://github.com/tamarervin/SolAster +https://github.com/cicirello/Chips-n-Salsa +https://github.com/nanoporetech/scrappie +https://github.com/felixbosco/KeplerFit +https://github.com/ImperialCollegeLondon/rcs_cluster_scripts +https://github.com/tatekawa-astron/PN +https://github.com/brentp/goleft +https://github.com/bioturing/hera +https://github.com/SWIFTSIM/emulator +https://github.com/akleroy/phangs_imaging_scripts +https://github.com/Keck-DataReductionPipelines/KcwiDRP +https://github.com/insilico/cncv +https://github.com/solerjuan/magnetar +https://github.com/panoptes-organization/panoptes +https://github.com/ropensci/workloopR +https://github.com/MRChemSoft/mrchem +https://github.com/vcflib/vcflib +https://github.com/agreenbaum/gsgs +https://github.com/mggg/ecological-inference +https://github.com/sevenstarknight/VariableStarAnalysis +https://github.com/PCMSolver/pcmsolver +https://github.com/ropensci/tidyhydat +https://github.com/exoclime/HELA +https://github.com/bshoshany/OGRe +https://github.com/longfei8533/SDC +https://github.com/DreamCloud-Project/McSim-Cycle-accurate-Xbar +https://github.com/gotsunami/Youpi +https://github.com/r3w0p/bobocep +https://github.com/astropy/halotools +https://github.com/SWE-UniStuttgart/Qlunc +https://github.com/jtschindler/sculptor +https://github.com/GabrielNakamura/FishPhyloMaker +https://github.com/morphometry/papaya2 +https://github.com/exomishra/kobe +https://github.com/AstrobioMike/GToTree +https://github.com/Anirbancosmo/Limpy +https://github.com/coolneighbors/unWISE-verse +https://github.com/afarahi/kllr +https://github.com/NKI-AI/direct +https://github.com/lime-rt/lime +https://github.com/IUCNN/IUCNN +https://github.com/scikit-tda/DREiMac +https://github.com/vishwas1984/LaplaceInterpolation.jl +https://github.com/stevengiacalone/triceratops +https://github.com/Starlink/perl-Starlink-Autoastrom +https://github.com/kegiljarhus/pyBEMT +https://github.com/ropensci/timefuzz +https://github.com/y-256/libdivsufsort +https://github.com/yuansliu/minirmd +https://github.com/bxlab/metaWRAP +https://github.com/mlipatov/paint_atmospheres +https://github.com/ropensci-review-tools/roreviewapi +https://github.com/wf4ever/astrotaverna +https://github.com/yair111/AnalyticLC +https://github.com/vimc/dettl +https://github.com/mifumagalli/cluster-cloc +https://github.com/Illumina/ExpansionHunterDenovo +https://github.com/twopin/CAMP +https://github.com/COMBINE-lab/libgff +https://github.com/freesurfer/freesurfer +https://github.com/octapps/octapps +https://github.com/dparkins/CosmoNest +https://github.com/Johannes-Sahlmann/pygacs +https://github.com/HERA-Team/aipy +https://github.com/davek44/Glimmer-MG +https://github.com/shbhuk/mrexo +https://github.com/GalletFlorian/TATOO +https://github.com/ropensci/rgbif +https://github.com/JFFleming/RCFV_Reader +https://github.com/MoreiraLAB/or +https://github.com/harrispopgen/mutyper +https://github.com/ropensci/rvertnet +https://github.com/BogdanCiambur/PROFILER +https://github.com/debbiemarkslab/plmc +https://github.com/vsbuffalo/scythe +https://github.com/GOVS-pack/GOVS +https://github.com/enthought/vpsearch +https://github.com/damienmarsic/Parent-map +https://github.com/oschwengers/bakta +https://github.com/phpuech/OT_Analysis +https://github.com/csb-toolbox/CSB +https://github.com/nivha/three_body_integration +https://github.com/dsheward-astro/PyNAPLE +https://github.com/mateidavid/fast5 +https://github.com/kgullikson88/Telluric-Fitter +https://github.com/ejsafron/SATCHEL +https://github.com/cicirello/rho-mu +https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Objects +https://github.com/holmescao/ANTS_marking_and_analysis_tools +https://github.com/mjoppich/bioGUItools +https://github.com/halomod/hmf +https://github.com/pni-lab/mlconfound +https://github.com/Gabaldonlab/crossmapper +https://github.com/sheinasim/HiFiAdapterFilt +https://github.com/milnus/Magphi +https://github.com/iontorrent/TS +https://github.com/bcgsc/goldrush +https://github.com/jan-rybizki/gdr2_completeness +https://github.com/AdmiralenOla/Scoary +https://github.com/JohannesBuchner/nway +https://github.com/HajimeKawahara/sot +https://github.com/ernewton/tellrv +https://github.com/eelregit/covdisc +https://github.com/kpenev/poet +https://github.com/niosh-mining/obsplus +https://github.com/EbmeyerSt/GEnView +https://github.com/atakan/KeplerSolver +https://github.com/natir/yacrd +https://github.com/broadinstitute/CellBender +https://github.com/jobovy/apogee +https://github.com/j-erler/pymf +https://github.com/tidyverse/glue +https://github.com/fakedrtom/oncogemini +https://github.com/basp-group/purify +https://github.com/vallis/mc3pta +https://github.com/gbernstein/gbdes +https://github.com/ImperialCollegeLondon/magda_tools +https://github.com/egpbos/barcode +https://github.com/rvaser/thread_pool +https://github.com/openmsi/openmsistream +https://github.com/astropy/astroplan +https://github.com/Schulik/aiolos +https://github.com/FunctionalUrology/MLcps https://github.com/phylo42/RAPPAS -https://github.com/sachsmc/cosinor -https://github.com/ropensci/pixelclasser -https://github.com/stinefm/relsad -https://github.com/moldyn/msmhelper -https://github.com/etempel/Bisous -https://github.com/MichaelSel/edoJS -https://github.com/smsharma/mining-for-substructure-lens -https://github.com/flemingtonlab/SpliceV -https://github.com/CSUBioGroup/GraphLncLoc -https://github.com/deepmind/alphafold -https://github.com/nickrodd/HDMSpectra -https://github.com/dcjones/quip -https://github.com/marco-oliva/pfp -https://github.com/biocore/deblur -https://github.com/EpistasisLab/regens -https://github.com/astropy/specutils -https://github.com/pyranges/pyrle -https://github.com/sapearson/HSS -https://github.com/byuflowlab/GXBeam.jl -https://github.com/ropensci/cffr -https://github.com/vpc-ccg/genion -https://github.com/davidpamos/MultiModes -https://github.com/kolikem/loma -https://github.com/bio-phys/BioEn -https://github.com/moead-framework/framework -https://github.com/hallamlab/TreeSAPP -https://github.com/donaldRwilliams/GGMnonreg -https://github.com/walaj/SeqLib -https://github.com/CMakePP/CMinx -https://github.com/marcelm/tinyalign +https://github.com/dellytools/delly +https://github.com/mattyowl/astLib +https://github.com/PolyChord/PolyChordLite +https://github.com/phil-mansfield/gotetra +https://github.com/zengzhenhuan/GFNet +https://github.com/alexfields/ORF-RATER +https://github.com/ropensci/katex +https://github.com/jdiasn/lidarSuit +https://github.com/phac-nml/staramr +https://github.com/eggplantbren/RJObject +https://github.com/Imperial-visualizations/Physics-Visualizations +https://github.com/MingBit/PySCNet +https://github.com/PolymerGuy/recolo +https://github.com/cpinte/casa_cube +https://github.com/bccp/nbodykit +https://github.com/Cristianetaniguti/Reads2Map +https://github.com/cgrudz/DataAssimilationBenchmarks.jl +https://github.com/jeremysanders/spex_to_xspec +https://github.com/Washington-University/CiftiLib +https://github.com/bhi-kimlab/StressGenePred +https://github.com/andresmegias/gildas-class-python +https://github.com/antoinemarchal/ROHSA +https://github.com/RichardMoot/LinearOne +https://github.com/kendomaniac/rCASC +https://github.com/cwentland0/perform +https://github.com/gpantel/MolPainter +https://github.com/PDB-REDO/dssp +https://github.com/evolbioinfo/goalign +https://github.com/remi-adam/minot +https://github.com/jessecambon/tidygeocoder +https://github.com/thomasorb/orbs +https://github.com/ImperialCollegeLondon/adam +https://github.com/joshuakt/Oxygen-False-Positives +https://github.com/SNEWS2/snewpy +https://github.com/ropensci/iheatmapr +https://github.com/ropensci/skimr +https://github.com/BioGearsEngine/core +https://github.com/Onogi/VIGoR +https://github.com/rodluger/everest +https://github.com/parkus/scicatalog +https://github.com/mmore500/hstrat +https://github.com/Varnani/pywd2015-qt5 +https://github.com/dbosul/cwitools +https://github.com/pezmaster31/bamtools +https://github.com/cblakeastro/intensitypower +https://github.com/tdaylan/pcat +https://github.com/biomedia-mira/masf +https://github.com/lucianolorenti/ceruleo +https://github.com/rasg-affiliates/healvis +https://github.com/lrnv/cort +https://github.com/skyfielders/python-skyfield +https://github.com/PyFstat/PyFstat +https://github.com/JCGonzS/mechnetor +https://github.com/GabrieleParimbelli/COLIBRI +https://github.com/temken/DaMaSCUS-CRUST +https://github.com/rdpstaff/ReadSeq +https://github.com/ropensci/phylotaR +https://github.com/BackofenLab/Peakhood +https://github.com/scottleedavis/google-earth-toolbox +https://github.com/hpparvi/PyTransit +https://github.com/ttgump/scDeepCluster_pytorch +https://github.com/wilkelab/Opfi +https://github.com/DEIB-GECO/VarSum +https://github.com/OpenGene/fastp +https://github.com/igmhub/baofit +https://github.com/dipangwvu/SPEGID +https://github.com/ajosephy/Clustering +https://github.com/ssadedin/bazam +https://github.com/wangjun1996/VisFeature +https://github.com/xiaofengsong/pHisPred +https://github.com/bcgsc/LongStitch https://github.com/NLeSC/root-conda-recipes -https://github.com/leirufeng/iEnhancer-DCSV -https://github.com/guilledufort/EnanoFASTQ -https://github.com/ICRAR/shark -https://github.com/alexdobin/STAR -https://github.com/drupke/questfit -https://github.com/hcdenbakker/SalmID -https://github.com/Gabaldonlab/karyon -https://github.com/oschwengers/bakta -https://github.com/danielkoll/PyRADS -https://github.com/matvii/ADAM -https://github.com/nluetts/NoisySignalIntegration.jl -https://github.com/pmelchior/skymapper -https://github.com/cpinte/mcfost +https://github.com/ltlancas/walter +https://github.com/shergreen/SatGen +https://github.com/ropensci/datapack +https://github.com/pennucci/PulsePortraiture +https://github.com/KBNLresearch/ochre +https://github.com/pedronachtigall/ToxCodAn-Genome +https://github.com/mlares/hearsay +https://github.com/michaeltouati/ESVM +https://github.com/IMMM-SFA/gamut +https://github.com/ImperialCollegeLondon/EpiCollectplus +https://github.com/epfl-radio-astro/LiSA +https://github.com/cbg-ethz/PredictHaplo +https://github.com/rpoleski/MulensModel +https://github.com/MikeSWang/Triumvirate +https://github.com/planck-npipe/hillipop +https://github.com/Cosmoglobe/zodipy +https://github.com/mrc-ide/ring +https://github.com/pierrexyz/pybird +https://github.com/semiautomaticgit/SemiAutomaticClassificationPlugin +https://github.com/DrMarc/slab +https://github.com/OP2/PyOP2 +https://github.com/AMSSwanglab/SpecVar +https://github.com/easystats/performance +https://github.com/cbg-ethz/V-pipe +https://github.com/ropensci-org/pkgreviewr +https://github.com/veg/tn93 +https://github.com/ropensci/taxadb +https://github.com/seawander/centerRadon +https://github.com/ajshajib/dolphin +https://github.com/valerio-marra/CalPriorSNIa +https://github.com/ajeldorado/falco-python +https://github.com/A-Davies/LensCNN +https://github.com/DreamCloud-Project/AMALTHEA-SimGrid +https://github.com/nh13/DWGSIM +https://github.com/radiocosmology/caput +https://github.com/justincfeng/PoMiN +https://github.com/trevisanj/PFANT +https://github.com/PMBio/spatialde2-paper +https://github.com/astro-informatics/sleplet +https://github.com/AP6YC/ClusterValidityIndices.jl https://github.com/FarnazFouladi/HashSeq_Manuscript -https://github.com/HWang-Summit/HCGrid -https://github.com/rezeebe/orbitN -https://github.com/hablabx/rfast -https://github.com/cmayer/BaitFisher-package -https://github.com/mcfrith/tandem-genotypes -https://github.com/ggmichael/craterstats -https://github.com/computational-chemical-biology/ChemWalker -https://github.com/NLeSC/noodles -https://github.com/NCAS-CMS/cfdm -https://github.com/ropensci-review-tools/srr -https://github.com/fair-workflows/nanopub -https://github.com/MIAnalyzer/MIA -https://github.com/moscibrodzka/ipole -https://github.com/RWTH-EBC/AixCaliBuHA -https://github.com/theislab/scCODA -https://github.com/ulelab/ultraplex -https://github.com/mpound/comb -https://github.com/Starlink/pal -https://github.com/phelelani/nf-rnaSeqMetagen -https://github.com/ryansmcgee/seirsplus -https://github.com/epruesse/SINA -https://github.com/adrn/SuperFreq -https://github.com/ComputationalPhysiology/simcardems -https://github.com/dentalfloss1/transients-simulations -https://github.com/CPM-project/MCPM -https://github.com/INCF/one_click -https://github.com/idefix-code/idefix -https://github.com/kboone/parsnip -https://github.com/nekokoe/Plasmer -https://github.com/spinicist/riesling -https://github.com/arq5x/bedtools2 -https://github.com/storyofthewolf/ExoRT -https://github.com/halomod/halomod -https://github.com/ExObsSim/ExoRad2-public -https://github.com/Narayana-Rao/PolSAR-tools -https://github.com/ireis/PRF -https://github.com/e-mental-health/orange-hackathon -https://github.com/HajkD/LTRpred -https://github.com/mattpitkin/lintegrate -https://github.com/WMD-group/MacroDensity -https://github.com/RafaelSdeSouza/qrpca -https://github.com/EmmanuelSchaan/HaloGen -https://github.com/astrosupriyo/pyTANSPEC -https://github.com/asmusskar/ALVA -https://github.com/tronsgaard/barycorr -https://github.com/cwieder/py-ssPA -https://github.com/hungyipu/Odyssey -https://github.com/ropensci/worrms -https://github.com/EMResearch/EvoMaster -https://github.com/MAnalytics/opitools -https://github.com/astrobrent/itera -https://github.com/tschad/pycelp -https://github.com/EmmanuelSchaan/ThumbStack -https://github.com/minzastro/unidam -https://github.com/iAART/aart -https://github.com/sanger-pathogens/iva -https://github.com/ropensci/namext -https://github.com/JamesPaynter/PyGRB -https://github.com/facebookresearch/segment-anything -https://github.com/artis-mcrt/artis -https://github.com/ropensci/zbank -https://github.com/deepskies/deeplenstronomy -https://github.com/exafmm/exafmm-t -https://github.com/al-mcintyre/mCaller -https://github.com/Pinlyu3/LRLoop -https://github.com/gogrean/PyXel -https://github.com/MingBit/PySCNet -https://github.com/cbio-astar-tools/GeneCloudOmics -https://github.com/Keck-DataReductionPipelines/KCWI_DRP -https://github.com/ExObsSim/Rapoc-public -https://github.com/prioritizr/wdpar -https://github.com/mrbell/fsclean -https://github.com/OceanGenomics/mudskipper -https://github.com/londumas/redvsblue -https://github.com/carlosandrepaes/GaPP -https://github.com/TeraTrees/TIPP -https://github.com/MicGrasso/bigonlight -https://github.com/MikkelSchubert/adapterremoval https://github.com/dgerosa/surrkick -https://github.com/gbernstein/gbdes -https://github.com/soerenslarsen/ISPy3 -https://github.com/ICESat2-SlideRule/paper -https://github.com/FINNGEN/lavaa-react -https://github.com/t-brandt/orvara -https://github.com/statgen/popscle -https://github.com/Circuitscape/Omniscape.jl -https://github.com/HajimeKawahara/sot -https://github.com/dh4gan/grapus -https://github.com/SuperKogito/spafe -https://github.com/NLeSC/compressing-the-sky -https://github.com/lauralwatkins/cjam -https://github.com/cwentland0/perform -https://github.com/kadyb/rgugik -https://github.com/NLeSC/eAstroViz -https://github.com/jdhenshaw/SCOUSE -https://github.com/fritzsedlazeck/Sniffles -https://github.com/AdriJD/beamconv -https://github.com/dib-lab/dammit -https://github.com/shbhuk/mrexo -https://github.com/valboz/VBBinaryLensing -https://github.com/jordanlab/STing -https://github.com/fair-software/fairtally -https://github.com/annayqho/TheCannon -https://github.com/realfastvla/rfpipe -https://github.com/paulbrodersen/netgraph -https://github.com/coleygroup/pyscreener +https://github.com/shahmoradi/grb_world +https://github.com/veragluscevic/dmdd +https://github.com/Taywee/args +https://github.com/aakepley/autobox +https://github.com/shangguandong1996/FindIT2 +https://github.com/brentp/kexpr-nim +https://github.com/barklem/mswavef +https://github.com/gbrammer/grizli +https://github.com/0x0f0f0f/Metatheory.jl +https://github.com/Singh-Lab/uKIN +https://github.com/nlesc-nano/Moka +https://github.com/rferdman/afr +https://github.com/rajewsky-lab/novosparc +https://github.com/ESMValGroup/ESMValCore +https://github.com/mrempel/geohexviz +https://github.com/YeoLab/clipper +https://github.com/aztekas-code/aztekas-main +https://github.com/JuliaSmoothOptimizers/DCISolver.jl +https://github.com/carlosandrepaes/GaPP +https://github.com/martibosch/detectree +https://github.com/INCF/one_click +https://github.com/sbird/fake_spectra +https://github.com/ropensci/ots https://github.com/FrancesBW/bellamy -https://github.com/zgazak/TAP -https://github.com/1313e/CMasher -https://github.com/VirtualPlanetaryLaboratory/atmos -https://github.com/fpavogt/fcmaker -https://github.com/openjournals/joss -https://github.com/koszullab/pareidolia -https://github.com/nlesc-ave/ave-rest-service -https://github.com/aymgal/COOLEST -https://github.com/jianghuaijie/scLRTC -https://github.com/YaleTHz/nelly -https://github.com/ropensci/mapscanner -https://github.com/eEcoLiDAR/Laserfarm -https://github.com/mattpitkin/psrqpy -https://github.com/GregoryFaust/samblaster -https://github.com/ekg/seqwish -https://github.com/NLeSC/baklava -https://github.com/CosmoStatGW/DarkSirensStat -https://github.com/eWaterCycle/eWaterleaf -https://github.com/glenco/lensed -https://github.com/podondra/eidein -https://github.com/milnus/Corekaburra +https://github.com/undark-lab/albatross +https://github.com/quadram-institute-bioscience/dadaist2 +https://github.com/dmentipl/plonk +https://github.com/mikecokina/elisa +https://github.com/lastz/lastz +https://github.com/MNGuenther/allesfitter +https://github.com/sanger-pathogens/snp-sites +https://github.com/miniufo/xinvert +https://github.com/mgm8/pyngham +https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts +https://github.com/spacepy/spacepy +https://github.com/sanjibs/bmcmc +https://github.com/nhcrisp/ADBSat +https://github.com/gianthk/ciclope +https://github.com/ajshajib/LensingETC +https://github.com/stinefm/relsad +https://github.com/raphael-group/hatchet +https://github.com/asgr/ProSpect +https://github.com/mlaparie/phidget-tools +https://github.com/dpthorngren/PlanetSlicer +https://github.com/hippke/tls +https://github.com/heliopython/heliopy +https://github.com/brentp/geneimpacts +https://github.com/adamjermyn/Skye +https://github.com/vdemichev/DiaNN +https://github.com/d-tear/SIAL +https://github.com/DKMS/Hapl-o-Mat_WinBin +https://github.com/elnjensen/Tapir +https://github.com/MarioRomeroC/Mixclask +https://github.com/vanheeringen-lab/gimmemotifs https://github.com/saltastro/pyhrs -https://github.com/devitocodes/pyrevolve -https://github.com/rdpstaff/AlignmentTools -https://github.com/steven-murray/powerbox -https://github.com/temuller/piscola -https://github.com/forrest-lab/scMatch -https://github.com/agree019/DarkCapPy -https://github.com/vimc/orderly -https://github.com/rvaser/rampler -https://github.com/barentsen/k2flix -https://github.com/ParkerLab/ataqv -https://github.com/brentp/peddy -https://github.com/patscott/pippi -https://github.com/jls713/tact -https://github.com/IMB-Computational-Genomics-Lab/scGPS -https://github.com/marbl/MashMap +https://github.com/ska-sa/hibayes +https://github.com/chombo-discharge/chombo-discharge +https://github.com/ruggiero/galstep +https://github.com/swagnercarena/paltas +https://github.com/R-Vessel-X/SlicerRVXLiverSegmentation +https://github.com/UM-Bridge/umbridge +https://github.com/ferdymercury/amide +https://github.com/BitSeq/BitSeq +https://github.com/he2016012996/CABnet +https://github.com/mattpitkin/lintegrate +https://github.com/glenco/lensed +https://github.com/RavenGan/GR2D2 +https://github.com/umbralcalc/helmpy +https://github.com/theislab/scvelo +https://github.com/DEIB-GECO/MutViz +https://github.com/EvolBioInf/phylonium +https://github.com/ropensci/neotoma +https://github.com/jveitchmichaelis/pygadgetreader +https://github.com/theislab/scCODA +https://github.com/zheng-lh/UBER +https://github.com/JEFworks-Lab/STdeconvolve +https://github.com/freelawproject/eyecite +https://github.com/UM-PEPL/HallThruster.jl +https://github.com/astronomical-data-processing/RAPP +https://github.com/curl/curl +https://github.com/msyazwanfaid/hilalpy +https://github.com/temken/DaMaSCUS-SUN +https://github.com/astrosmili/smili +https://github.com/ewanbarr/peasoup +https://github.com/astrostat/Automark +https://github.com/mkargo/pipeline +https://github.com/pedro-acunha/SHEEP +https://github.com/tanner-trickle/EXCEED-DM +https://github.com/jodyphelan/TBProfiler +https://github.com/Biomedical-Imaging-Group/Steer-n-Detect +https://github.com/pierfied/karmma +https://github.com/nlesc-nano/swan +https://github.com/UUDigitalHumanitieslab/texcavator +https://github.com/python-streamz/streamz +https://github.com/kateharborne/SimSpin +https://github.com/wdecoster/nanopack +https://github.com/ProjectPyRhO/PyRhO +https://github.com/mfruzan/HaploMaker +https://github.com/magnuspalmblad/shic +https://github.com/Illumina/strelka +https://github.com/bengeof/QPoweredCompound2DeNovoDrugPropMax +https://github.com/vedantchandra/wdtools +https://github.com/ropensci/tinkr +https://github.com/MeasureTransport/MParT +https://github.com/ImperialCollegeLondon/safedata +https://github.com/srdc/onfhir +https://github.com/planck-npipe/lollipop +https://github.com/vortex-exoplanet/VIP +https://github.com/tonhingm/PHOTOe-v1 +https://github.com/AstroChem/VISIBLE +https://github.com/emossoux/LIFELINE +https://github.com/r-spatial/rgee +https://github.com/aimalz/qp +https://github.com/BiodataAnalysisGroup/UMIc +https://github.com/NCAS-CMS/cfdm +https://github.com/IlianPihlajamaa/ModeCouplingTheory.jl +https://github.com/snakemake/snakemake +https://github.com/vreverdy/magrathea-pathfinder +https://github.com/JD2112/methylr +https://github.com/ImperialCollegeLondon/sap-voicebox +https://github.com/mikessh/vdjtools +https://github.com/fkeruzore/panco2 +https://github.com/scottgigante/picopore +https://github.com/biolab/orange3-network +https://github.com/yuliang419/Astronet-Vetting +https://github.com/BiocomputeLab/paraSBOLv +https://github.com/ACCarnall/bagpipes +https://github.com/bhorowitz/HyPhy-public +https://github.com/cdfortenbach/JET +https://github.com/smsharma/fermi-gce-flows +https://github.com/PyPSA/atlite +https://github.com/gheald/rmclean https://github.com/Dylan-Aliberti/Kepler-Collisions -https://github.com/uw-comphys/opencmp -https://github.com/xxsds/DYNAMIC -https://github.com/ijuric/MAPS -https://github.com/comprna/reorientexpress -https://github.com/tornede/py_experimenter -https://github.com/olivecha/guitarsounds -https://github.com/FRBs/FRB -https://github.com/ropensci/epubr -https://github.com/AbbasAlameer/geoCancerPrognosticDatasetsRetriever -https://github.com/LSSTDESC/Spectractor -https://github.com/shihyuntang/igrins_rv -https://github.com/andresmegias/gildas-class-python -https://github.com/ArenA-Crowds/Crowds -https://github.com/BenNordick/HiLoop -https://github.com/torognes/swarm -https://github.com/ebmonson/2DFFTUtils-Module -https://github.com/JohannesBuchner/BXA -https://github.com/JulioHC00/PEPITA -https://github.com/theLongLab/CATE -https://github.com/DochtermannLab/BehavioralHeritability -https://github.com/bioinfo-ut/GenomeTester4 -https://github.com/GRIT-RBSim/GRIT -https://github.com/oscaribv/citlalicue -https://github.com/milnus/Magphi -https://github.com/tpospisi/RFCDE -https://github.com/twopin/CAMP -https://github.com/popgenmethods/smcpp -https://github.com/t-brandt/acorns-adi -https://github.com/ropensci/ckanr -https://github.com/PDB-REDO/cif-tools -https://github.com/JSB-UCLA/scPNMF -https://github.com/pedronachtigall/ToxCodAn-Genome -https://github.com/brentp/mosdepth -https://github.com/AstarVienna/skycalc_ipy -https://github.com/agurvich/FIRE_studio -https://github.com/ArgonneCPAC/dsps -https://github.com/signaturescience/skater -https://github.com/LalResearchGroup/CNV-clinviewer -https://github.com/TinkerTools/tinker9 -https://github.com/xdqso/xdqso -https://github.com/snfactory/binaryoffset -https://github.com/hongli-ma/RNANetMotif -https://github.com/DEIB-GECO/CRIS_single-sample -https://github.com/sethspjohnso/satmc -https://github.com/pyvisa/pyvisa -https://github.com/fermisurfaces/IFermi -https://github.com/qmarcou/IGoR -https://github.com/astroML/gatspy -https://github.com/pmelsted/pizzly -https://github.com/petigura/terra -https://github.com/sandmanns/CopyDetective -https://github.com/mikessh/oncofuse -https://github.com/ropensci/opencv -https://github.com/ropensci/excluder -https://github.com/ropensci/biomartr -https://github.com/cbg-ethz/shorah -https://github.com/nickjcroucher/gubbins -https://github.com/r-spatialecology/shar -https://github.com/alexriss/SpmImageTycoon.jl -https://github.com/skiehl/lcsim -https://github.com/rdpstaff/classifier -https://github.com/HITS-AIN/GPCC.jl -https://github.com/ggonnella/rgfa -https://github.com/rkiman/wdwarfdate -https://github.com/neuroanatomy/reorient -https://github.com/zhangjunpeng411/SCOM -https://github.com/mattyowl/astLib +https://github.com/Kushaalkumar-pothula/FLARE +https://github.com/JensUweUlrich/ReadBouncer +https://github.com/gilestrolab/ethoscope +https://github.com/FSEC-Photovoltaics/pvrpm-lcoe +https://github.com/EpistasisLab/regens +https://github.com/basp-group/SARA-PPD +https://github.com/flintproject/Flint +https://github.com/ropensci/solrium +https://github.com/jmhuie/Slicer-SegmentGeometry +https://github.com/NorwegianVeterinaryInstitute/ALPPACA +https://github.com/ropensci/photosearcher +https://github.com/tanhevg/GpABC.jl +https://github.com/ropensci/rAltmetric +https://github.com/nebblu/ReACT +https://github.com/FergusDonnan/PAHDecomp +https://github.com/medema-group/bigslice +https://github.com/moble/GWFrames +https://github.com/hrwakeford/ExoTiC-ISM +https://github.com/adrientaudiere/MiscMetabar +https://github.com/tomasplsek/CADET +https://github.com/nkhorshid/SimAb +https://github.com/ropensci/rmangal +https://github.com/seeh/surprise +https://github.com/geospace-code/h5fortran +https://github.com/avigan/pyZELDA +https://github.com/oliverphilcox/Keplers-Goat-Herd +https://github.com/deepmind/alphafold +https://github.com/fpavogt/fcmaker +https://github.com/drphilmarshall/HumVI +https://github.com/ropensci/addressable +https://github.com/darioizzo/dcgp +https://github.com/parsotat/BatAnalysis +https://github.com/emhuff/Balrog +https://github.com/storyofthewolf/ExoCAM +https://github.com/witseie/fpgaperm +https://github.com/PieterjanRobbe/GaussianRandomFields.jl +https://github.com/siavashk/pycpd +https://github.com/AbeelLab/lorikeet https://github.com/natir/vcf2parquet -https://github.com/actris-cloudnet/cloudnetpy -https://github.com/pysam-developers/pysam -https://github.com/timchurches/NetEpi-Analysis -https://github.com/MiguelEA/nudec_BSM -https://github.com/bradkav/BlackHolesDarkDress -https://github.com/3D-e-Chem/knime-python-wrapper -https://github.com/NLeSC/eEcology-Annotation-WS -https://github.com/bacpop/PopPUNK -https://github.com/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP -https://github.com/ExoSim/ExoSimPublic -https://github.com/ekg/fastahack -https://github.com/ropensci/roadoi +https://github.com/sczesla/PyAstronomy +https://github.com/sonwell/biotools +https://github.com/barahona-research-group/hcga +https://github.com/sorenwacker/ProteomicsQC +https://github.com/Nicole-DH/ACP-MLC +https://github.com/arcaldwell49/SimplyAgree +https://github.com/vgteam/vg +https://github.com/bthorne93/PySM_public +https://github.com/nvalimak/fsm-lite +https://github.com/ShubhadeepSadhukhan1993/fastSF +https://github.com/xavierdidelot/ClonalFrameML +https://github.com/computational-chemical-biology/ChemWalker +https://github.com/uedaLabR/nanoDoc +https://github.com/conda/pycosat +https://github.com/JCGoran/coffe +https://github.com/pepamengual/UEP +https://github.com/mpc-bioinformatics/CalibraCurve +https://github.com/nickrodd/HDMSpectra +https://github.com/OpenGene/fastv +https://github.com/bcalden/ClusterPyXT +https://github.com/opencollab/arpack-ng +https://github.com/AnantharamanLab/vRhyme +https://github.com/JohannesBuchner/PyMultiNest +https://github.com/artic-network/readucks https://github.com/jarvist/Julia-Phonons -https://github.com/ntcockroft/STarFish -https://github.com/oliverphilcox/HIPSTER -https://github.com/INCEPTdk/adaptr -https://github.com/DrafProject/elmada -https://github.com/morriscb/the-wizz -https://github.com/saeyslab/CytoNorm_Figures -https://github.com/afarahi/PoPE -https://github.com/jonaselgammal/GPry -https://github.com/smithlabcode/preseq -https://github.com/Cosmoglobe/zodipy -https://github.com/LangeLab/SQuAPP -https://github.com/alan-turing-institute/Palaeoanalytics -https://github.com/DEIB-GECO/CombSAFE -https://github.com/genome/somatic-sniper -https://github.com/seqan/lara +https://github.com/davideamato/NAPLES +https://github.com/FRBs/FRB +https://github.com/AOtools/aotools +https://github.com/cagrikymk/JAX-ReaxFF +https://github.com/hknd23/idcempy +https://github.com/phillippro/agatha +https://github.com/kritiyer/AngioNet +https://github.com/oorb/oorb +https://github.com/exoclime/FastChem +https://github.com/PeterDenton/ANA +https://github.com/mikegrudic/pytreegrav +https://github.com/rajeshmondal18/ReionYuga +https://github.com/cinemascience/cinema_snap +https://github.com/poldracklab/nitransforms +https://github.com/EmmanuelSchaan/HaloGen +https://github.com/astrostat/LIRA +https://github.com/nboley/idr +https://github.com/ptiede/Comrade.jl +https://github.com/ropensci/excluder +https://github.com/donaldRwilliams/BGGM +https://github.com/pydata/xarray +https://github.com/tvwenger/tmbidl +https://github.com/pcubillos/mc3 +https://github.com/SysBioUAB/hpi_predictor +https://github.com/ropensci/aRxiv +https://github.com/AndrewAnnex/SpiceyPy +https://github.com/aneeshnaik/spam +https://github.com/lsds/sgx-lkl +https://github.com/kgullikson88/Companion-Finder +https://github.com/ropensci/RSelenium +https://github.com/nyusngroup/pyMCZ +https://github.com/ejikeugba/gofcat +https://github.com/HUST-NingKang-Lab/ONN4MST +https://github.com/bcgsc/abyss +https://github.com/moble/scri +https://github.com/MaayanLab/signature-commons-ui +https://github.com/SAMI-Galaxy-Survey/sami +https://github.com/mscroggs/symfem https://github.com/pyomeca/biosiglive -https://github.com/Punzo/SlicerAstro -https://github.com/PDB-REDO/dssp -https://github.com/alexander-shen/rtest -https://github.com/spacepy/spacepy -https://github.com/ialopezt/GalLenspy -https://github.com/phpuech/OT_Analysis -https://github.com/kgullikson88/Telluric-Fitter -https://github.com/PacificBiosciences/pbcore -https://github.com/SchmidtDSE/afscgap -https://github.com/zengzhenhuan/GFNet -https://github.com/y-256/libdivsufsort +https://github.com/smog-server/OpenSMOG +https://github.com/tholoien/empiriciSN +https://github.com/CosmoStat/shapepipe +https://github.com/cbalbin-bio/Epitopedia +https://github.com/uclchem/Chemulator +https://github.com/rizkg/BBHash +https://github.com/coleygroup/pyscreener +https://github.com/blind-contours/CVtreeMLE +https://github.com/klho/FLAM +https://github.com/MIT-STARLab/deconfuser +https://github.com/ejhigson/dyPolyChord +https://github.com/RomainFeron/mwga-utils +https://github.com/htjb/margarine +https://github.com/ropensci/rnpn +https://github.com/lofar-astron/DP3 +https://github.com/joe-antognini/kozai +https://github.com/ropensci/terrainr +https://github.com/al-mcintyre/mCaller +https://github.com/ropensci/rgnparser +https://github.com/astro-informatics/comb +https://github.com/sing-group/my-brain-seq +https://github.com/toros-astro/astroalign-legacy +https://github.com/asmusskar/ALVA +https://github.com/OSeMOSYS/otoole +https://github.com/hippke/wotan +https://github.com/leprojetcastor/castor +https://github.com/ntcockroft/STarFish +https://github.com/SCM-NV/pyZacros +https://github.com/DreamCloud-Project/McSim-TLM-NoC +https://github.com/ABard0/MDGF-MCEC +https://github.com/rmaphoh/AutoMorph +https://github.com/saberyoung/HAFFET +https://github.com/wdecoster/nanoget +https://github.com/gausspy/gausspy +https://github.com/CBIIT-CGBB/gcMECM +https://github.com/smsharma/mining-for-substructure-lens +https://github.com/bxlab/bx-python +https://github.com/EGaraldi/ZInCo +https://github.com/online-behaviour/find-journalists +https://github.com/kuadrat/data-slicer +https://github.com/kuenzelab/ENDURE +https://github.com/conda/conda-package-handling +https://github.com/hposborn/MonoTools +https://github.com/rmjarvis/Piff +https://github.com/zachetienne/nrpytutorial +https://github.com/JulianZDing/UniMAP +https://github.com/BEAST-Fitting/beast +https://github.com/Oftatkofta/cellocity +https://github.com/highamm/sptotal +https://github.com/ridgelab/ExtRampOnline +https://github.com/PaulMcMillan-Astro/Torus +https://github.com/lanl/swiftbat_python https://github.com/RuthAngus/SIPK2 -https://github.com/mtholder/ncl -https://github.com/jakevdp/wpca -https://github.com/morphometry/papaya2 -https://github.com/weizhouUMICH/SAIGE -https://github.com/COVID-IWG/epimargin -https://github.com/NLeSC/python-template -https://github.com/FEniCS/basix -https://github.com/sfschen/velocileptors -https://github.com/PacificBiosciences/minorseq -https://github.com/yjx1217/RecombineX -https://github.com/ska-sa/katdal -https://github.com/ropensci-archive/rodev -https://github.com/phelelani/nf-rnaSeqCount -https://github.com/Kaixhin/FGLab -https://github.com/metawards/MetaWards -https://github.com/lime-rt/lime -https://github.com/Imperial-visualizations/Physics-Visualizations -https://github.com/deezer/spleeter -https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library -https://github.com/Trovemaster/Duo -https://github.com/luxsrc/gray -https://github.com/fabian-sp/GGLasso -https://github.com/esquivas/guacho -https://github.com/kpenev/poet -https://github.com/pnsaevik/effluent -https://github.com/SCM-NV/qmflows -https://github.com/pyplati/platipy -https://github.com/cole-trapnell-lab/cufflinks +https://github.com/ProfessorBrunner/rc3-pipeline +https://github.com/plazar/coast_guard +https://github.com/martinjameswhite/ZeldovichRecon +https://github.com/maxpumperla/hyperas +https://github.com/weizhongli/cdhit https://github.com/andizq/sf3dmodels -https://github.com/bcgsc/LongStitch -https://github.com/ropensci/xslt -https://github.com/cumbof/honto -https://github.com/ska-sa/hibayes -https://github.com/dipangwvu/SPEGID -https://github.com/QEF/q-e -https://github.com/linbox-team/linbox -https://github.com/vhaasteren/piccard -https://github.com/apertif/apercal -https://github.com/theislab/scvelo -https://github.com/mc-imperial/multicore-test-harness -https://github.com/mazzalab/pyntacle -https://github.com/sanger-pathogens/snp-sites -https://github.com/alstat/ALUES -https://github.com/ropensci/dataaimsr -https://github.com/twinl/website -https://github.com/DRMacIver/shrinkray -https://github.com/tp2vis/distribute -https://github.com/hongwanliu/DarkHistory -https://github.com/nanoporetech/qcat -https://github.com/OpenGene/fastv -https://github.com/ncbi/TPMCalculator -https://github.com/wdecoster/nanoQC -https://github.com/esoPanda/FTbg -https://github.com/DreamCloud-Project/McSim-Cycle-accurate-NoC -https://github.com/phineasng/DECODE -https://github.com/kungfugo/BellDiagonalQudits.jl -https://github.com/JulianBMunoz/21cmvFAST -https://github.com/ropensci/essurvey -https://github.com/samconnolly/DELightcurveSimulation -https://github.com/alexfields/ORF-RATER -https://github.com/labjg/fibmeasure -https://github.com/timstaley/amisurvey -https://github.com/Muhammad-Arif-NUST/BVP_Pred_Unb -https://github.com/davidebolo1993/VISOR -https://github.com/PeterBartram/TES -https://github.com/muctadir/lama -https://github.com/Ensembl/ensembl-vep -https://github.com/pyxnat/pyxnat -https://github.com/tamarervin/SolAster +https://github.com/apcamargo/prodigal-gv +https://github.com/CobayaSampler/cobaya +https://github.com/el2718/FastQSL +https://github.com/HaowenZhang/TRINITY +https://github.com/drupke/questfit +https://github.com/espnet/espnet +https://github.com/altjerue/paramo +https://github.com/JuliaOcean/AIBECS.jl +https://github.com/ckay314/OSPREI +https://github.com/astro-informatics/flag-archive +https://github.com/shinichiroando/sashimi-w +https://github.com/dawolfgang/MRrelation +https://github.com/ixkael/QuickSip +https://github.com/ropensci/rppo +https://github.com/djgroen/MPWide +https://github.com/matteozennaro/reps +https://github.com/CisnerosResearch/LICHEM +https://github.com/kutaslab/fitgrid +https://github.com/bradkav/EarthShadow +https://github.com/palaeoware/revosim +https://github.com/fulcrumgenomics/fgbio +https://github.com/brentp/mosdepth +https://github.com/cjneely10/EukMetaSanity +https://github.com/hansenjohnson/WhaleMap +https://github.com/soerendip/ms-mint +https://github.com/KeplerGO/k2mosaic +https://github.com/vrodgom/statmorph +https://github.com/CFSAN-Biostatistics/SeroTools +https://github.com/ugovaretto/molekel +https://github.com/bramvandijk88/cacatoo +https://github.com/rkiman/wdwarfdate +https://github.com/sjforeman/bskit +https://github.com/ropensci/gittargets https://github.com/NLeSC/docker-couch-admin -https://github.com/ladsantos/flatstar -https://github.com/sfeeney/hh0 -https://github.com/cgrudz/DataAssimilationBenchmarks.jl -https://github.com/PabloVD/21cmDeepLearning -https://github.com/Libensemble/libensemble -https://github.com/auckland-cosmo/defrost-mpi -https://github.com/kimberg/voxbo -https://github.com/piernik-dev/piernik -https://github.com/nservant/HiC-Pro -https://github.com/chombo-discharge/chombo-discharge -https://github.com/AA-ALERT/frbcatdb -https://github.com/Materials-Consortia/OPTIMADE-Filter -https://github.com/ropensci/bowerbird -https://github.com/ZacharyJia/opsdn -https://github.com/brian-lau/MatlabAUC -https://github.com/davidkipping/LDC3 -https://github.com/ropensci/wateRinfo -https://github.com/parkus/fiducial_flare -https://github.com/JulianBMunoz/Zeus21 -https://github.com/gymreklab/GangSTR -https://github.com/LSSTDESC/snmachine -https://github.com/monarch-initiative/loinc2hpo -https://github.com/weiliu123/PCLassoReg -https://github.com/HERA-Team/aipy -https://github.com/husonlab/dendroscope3 -https://github.com/pmoulos/metaseqR2 +https://github.com/ttgump/scDHMap +https://github.com/ropensci/tidync +https://github.com/AA-ALERT/frbcat-web +https://github.com/genouest/biomaj-daemon +https://github.com/simonsobs/mnms +https://github.com/pec27/hfof +https://github.com/JolleJolles/pirecorder +https://github.com/ProSolo/prosolo +https://github.com/jeremysanders/xspec_emcee +https://github.com/jpierel14/snsed +https://github.com/WatsonGroupTCD/J2suscep +https://github.com/Shamir-Lab/domino_web +https://github.com/miracum/ahd2fhir +https://github.com/gymreklab/chips +https://github.com/ClusterMonteCarlo/CMC-COSMIC +https://github.com/mpi4jax/mpi4jax +https://github.com/beckermr/calclens +https://github.com/NLeSC/case-law-app +https://github.com/DSIMB/MEDUSA +https://github.com/JoschaJ/mockFRBhosts +https://github.com/nhejazi/txshift +https://github.com/marbl/MashMap +https://github.com/csinva/imodels +https://github.com/ccsb-scripps/Illustrate +https://github.com/lightning-project/lightning +https://github.com/exoclime/HELIOS +https://github.com/codidact/qpixel +https://github.com/tool-bin/ukbcc +https://github.com/nathanael-fijalkow/DeepSynth +https://github.com/abschneider/StrainHub +https://github.com/ropensci/opencage +https://github.com/linDing-groups/Deep-4mCW2V +https://github.com/3D-e-Chem/knime-sstea +https://github.com/maize-genetics/rTASSEL +https://github.com/ropensci/chlorpromazineR +https://github.com/erikhom/aida +https://github.com/rathnakumars/difference-smoothing +https://github.com/cedrus-opensource/pyxid +https://github.com/jolie/tquery +https://github.com/ropensci/nlrx +https://github.com/awsteiner/o2scl +https://github.com/ropensci/lingtypology +https://github.com/spglib/spgrep +https://github.com/Balaje/iceFem +https://github.com/Alcampopiano/hypothesize +https://github.com/ropensci/bold +https://github.com/alastair-droop/fqtools +https://github.com/hishamhm/htop +https://github.com/nhejazi/medoutcon +https://github.com/OxES/k2sc +https://github.com/polca/unfold +https://github.com/bow/crimson +https://github.com/QibangLiu/PDLSM-FEM_mpi +https://github.com/Bonfanti88/MCMCI +https://github.com/jean-pierreBoth/gsearch +https://github.com/jmsdsouzaPhD/GWDALI +https://github.com/lammps/lammps +https://github.com/AWehrhahn/SME +https://github.com/Starlink/starlink +https://github.com/GaryBAYLOR/mixR +https://github.com/tbronzwaer/raptor +https://github.com/fred3m/toyz +https://github.com/temken/Dirac_vs_Majorana +https://github.com/WGLab/LongGF +https://github.com/mariogrs/Simfast21 +https://github.com/ropensci/rredlist +https://github.com/rabrahm/zaspe +https://github.com/simple-crypto/SCALib +https://github.com/jorittmo/singcar +https://github.com/ropenscilabs/r2readthedocs +https://github.com/3D-e-Chem/knime-molviewer +https://github.com/eleniadam/npgreat +https://github.com/ropensci/targets +https://github.com/JakobBD/pounce +https://github.com/sbird/GenPK +https://github.com/JuliaOcean/PlanktonIndividuals.jl +https://github.com/ropensci/bomrang +https://github.com/alan-turing-institute/Palaeoanalytics +https://github.com/DreamCloud-Project/McSim-Cycle-accurate-NoC +https://github.com/ropensci/predictNMB +https://github.com/nemesiscode/radtrancode +https://github.com/tramarobin/fctSnPM +https://github.com/sibirrer/hierArc +https://github.com/ropensci/bibtex +https://github.com/ImperialCollegeLondon/UVLM +https://github.com/heatherprince/cosmoped +https://github.com/mdshw5/pyfaidx +https://github.com/Griffan/VerifyBamID +https://github.com/kingyin3613/ringspy +https://github.com/AndreyTavleev/DiscVerSt +https://github.com/XGI-MSU/PyIMRPhenomD +https://github.com/rodluger/starry_process +https://github.com/ajeldorado/falco-matlab +https://github.com/SIOSlab/exodetbox +https://github.com/HARMONI-ELT/HSIM +https://github.com/Yash-10/beta-sgp +https://github.com/pw31/GGchem +https://github.com/yangxiaolinyn/Lemon +https://github.com/jkluter/MLG +https://github.com/lh3/seqtk +https://github.com/faircloth-lab/phyluce +https://github.com/ClaudioZandonella/PRDA +https://github.com/pencil-code/pencil-code +https://github.com/vallis/libstempo +https://github.com/atfrank/PyShifts +https://github.com/tylertrimble/viswaternet +https://github.com/NLeSC/python-template +https://github.com/NLeSC/embodied-emotions-scripts +https://github.com/statgen/demuxlet +https://github.com/FDPS/FDPS +https://github.com/AntonelliLab/seqcap_processor +https://github.com/YonghuiDong/RawHummus +https://github.com/mathjax/MathJax +https://github.com/CNES/EleFits +https://github.com/barricklab/pLannotate +https://github.com/AstarVienna/skycalc_ipy +https://github.com/ZjuLiangsl/mmkp +https://github.com/EnricoCorsaro/FAMED +https://github.com/mlhutchins/LWPC +https://github.com/muctadir/lama +https://github.com/artis-mcrt/artis +https://github.com/eWaterCycle/era5cli +https://github.com/asgr/celestial +https://github.com/UrbanRuralSystems/ur-scape +https://github.com/OttoStruve/muler +https://github.com/sina-cb/Tn-seqExplorer +https://github.com/ERA-URBAN/netcdf2littler https://github.com/jdswinbank/Comet -https://github.com/mraveri/tensiometer -https://github.com/PaulSt/NGSTrefftz -https://github.com/codidact/qpixel -https://github.com/medema-group/bigslice -https://github.com/shbhuk/barycorrpy -https://github.com/ShixiangWang/sigminer -https://github.com/firedrakeproject/gusto -https://github.com/zizroc/villager -https://github.com/ratt-ru/PyMORESANE -https://github.com/husonlab/megan-ce -https://github.com/aasensio/hazel -https://github.com/ropensci-review-tools/roreviewapi -https://github.com/shenlab-sinai/ngsplot -https://github.com/JacksonBurns/astartes -https://github.com/sevenstarknight/VariableStarAnalysis -https://github.com/ageller/Firefly -https://github.com/EskelandLab/ShinyArchRUiO -https://github.com/changhoonhahn/pySpectrum -https://github.com/shandley/hecatomb -https://github.com/ogotoh/spaln -https://github.com/NLeSC/SalientDescriptor-matlab -https://github.com/bengeof/QPoweredCompound2DeNovoDrugPropMax -https://github.com/ropensci/RefManageR -https://github.com/thetisproject/thetis -https://github.com/BackofenLab/IntaRNA -https://github.com/hnikaein/stark -https://github.com/jacobmerson/model-traits -https://github.com/PyTables/PyTables -https://github.com/Alymantara/pydoppler -https://github.com/martinjzhang/scDRS -https://github.com/VirtualPlantLab/PlantSimEngine.jl -https://github.com/astropy/astroquery -https://github.com/hpgem/nanomesh -https://github.com/pavolgaj/OCFit -https://github.com/Starfish-develop/Starfish -https://github.com/ZhenjiangFan/DAG-deepVASE -https://github.com/blebon/directChillFoam -https://github.com/Acellera/htmd -https://github.com/ropensci/rcites -https://github.com/jbuisine/macop -https://github.com/ropensci/randgeo -https://github.com/Hi-COLACode/Hi-COLA -https://github.com/oliverphilcox/RascalC -https://github.com/biomedia-mira/blast-ct -https://github.com/pepkit/geofetch -https://github.com/fairdataihub/SPARClink -https://github.com/PolymerGuy/recolo -https://github.com/conda/conda-package-handling -https://github.com/HIPS/autograd -https://github.com/HEML/HEML -https://github.com/yatiml/yatiml -https://github.com/utrillalab/repromin -https://github.com/deeptools/HiCExplorer -https://github.com/sheryl-ai/MetaPred -https://github.com/liuhao-cn/fastSHT -https://github.com/tvwenger/tmbidl -https://github.com/cosmicrays/DRAGON -https://github.com/hjens/lasso_spectra -https://github.com/beebdev/HARU -https://github.com/grahambell/pymoc -https://github.com/variomes/sibtm-variomes -https://github.com/Parsl/parsl -https://github.com/agombolay/ribose-map -https://github.com/rhyspoulton/OrbWeaver -https://github.com/gijut/gnucash -https://github.com/samtools/htsjdk -https://github.com/smoh/kinesis -https://github.com/xinglunju/pyAmor -https://github.com/bodenlab/GRASP -https://github.com/parallelwindfarms/byteparsing +https://github.com/transientskp/pyse +https://github.com/NuGrid/NuPyCEE +https://github.com/MikeSWang/HorizonGRound +https://github.com/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework +https://github.com/ropensci/isdparser +https://github.com/JixingGE/GGCHEMPY +https://github.com/cosmo-ethz/CosmoHammer +https://github.com/pierrehoudayer/RUBIS +https://github.com/SJaffa/Jplots +https://github.com/macs3-project/MACS +https://github.com/jackmwolf/tehtuner +https://github.com/ggciag/mandyoc +https://github.com/yymao/abundancematching +https://github.com/mrc-ide/squire +https://github.com/eEcoLiDAR/laserchicken +https://github.com/equib/pyEQUIB +https://github.com/byuflowlab/GXBeam.jl +https://github.com/ropensci-org/rotemplate +https://github.com/MADHATdm/MADHAT +https://github.com/stefanoMP/massiveGST +https://github.com/pyspeckit/pyspeckit +https://github.com/moranegg/deposit-template +https://github.com/younglab/origami +https://github.com/rhyspoulton/WhereWolf +https://github.com/bcgsc/ntHash +https://github.com/dgrin1/axionCAMB +https://github.com/joshjchayes/TransitFit +https://github.com/llt1836/TE-HI-GCN +https://github.com/mourisl/Lighter +https://github.com/COMBINE-lab/RapMap +https://github.com/lsds/KungFu +https://github.com/Crompulence/cpl-library +https://github.com/BiodataAnalysisGroup/kmerAnalyzer +https://github.com/NLeSC/SalientDetector-python +https://github.com/nanoporetech/qcat +https://github.com/pudu-py/pudu +https://github.com/deepmedic/deepmedic +https://github.com/nombac/optab +https://github.com/n8thangreen/BCEA +https://github.com/JGCRI/ambrosia +https://github.com/hsinnan75/GSAlign +https://github.com/jbytecode/JMcDM +https://github.com/NLeSC/eSalsa-MPI +https://github.com/biomedia-mira/drop2 +https://github.com/theosanderson/chronumental +https://github.com/aarondotter/iso +https://github.com/bancaditalia/black-it +https://github.com/nanoporetech/ont_fast5_api +https://github.com/singularityhub/singularity-compose +https://github.com/masoncarney/stepped_luneburg +https://github.com/PhilippJunk/homelette +https://github.com/TRI-AMDD/GMP-featurizer +https://github.com/GRIT-RBSim/GRIT +https://github.com/mrc-ide/rrq +https://github.com/RussellJurek/busy-function-fitting +https://github.com/cwru-pat/cosmograph +https://github.com/samuelefiorini/tangle +https://github.com/logan-pearce/lofti_gaia +https://github.com/Ajstros/pyripherals +https://github.com/raddleverse/MimiBRICK.jl +https://github.com/GambitBSM/gambit_1.3 +https://github.com/ImproPhoto/pymicmac +https://github.com/ropensci/antanym +https://github.com/aboucaud/pypher +https://github.com/oruhnau/when2heat https://github.com/lgbouma/gyro-interp -https://github.com/eggplantbren/RMHB +https://github.com/AgrDataSci/climatrends +https://github.com/cmbant/getdist +https://github.com/rpetit3/fastq-scan +https://github.com/eggnogdb/eggnog-mapper +https://github.com/open2c/pairtools +https://github.com/nlesc-nano/ceiba-cli +https://github.com/HalHaggard/EARL +https://github.com/domenico-simone/rmlst_api +https://github.com/dnafinder/uroccomp +https://github.com/lnscan/mitoSplitter +https://github.com/dh4gan/tache +https://github.com/ropensci/cde +https://github.com/BASTAcode/BASTA +https://github.com/agshumate/LiftoffTools +https://github.com/cvbuchem/LavAtmos +https://github.com/mr-superonion/FPFS +https://github.com/guangtunbenzhu/SetCoverPy +https://github.com/GOMC-WSU/GOMC +https://github.com/SPARTA-dev/SPARTA +https://github.com/deeptools/py2bit +https://github.com/abeelen/powspec +https://github.com/nhejazi/haldensify +https://github.com/aothmane-control/Algebraic-differentiators +https://github.com/ropensci/comtradr +https://github.com/TeraTrees/TIPP +https://github.com/sachsmc/cosinor +https://github.com/klb2/qmkpy +https://github.com/nitadori/SCF-FDPS +https://github.com/liamedeiros/ehtplot +https://github.com/nicolet5/DiffCapAnalyzer +https://github.com/hsso/crete +https://github.com/OSU-BMBL/IDAM +https://github.com/transientskp/tkp +https://github.com/mwoodbri/MRIdb +https://github.com/NREL/graph-env +https://github.com/sundarjhu/2-DUST +https://github.com/schochastics/graphlayouts +https://github.com/SteveMacenski/slam_toolbox +https://github.com/idrugLab/hignn +https://github.com/gtayana/CVRMS +https://github.com/iipharma/pharmamind-molminer +https://github.com/ropensci/osfr +https://github.com/korcsmarosgroup/TFlink +https://github.com/davidkipping/MAH +https://github.com/dwkim78/pdtrend +https://github.com/megbedell/wobble +https://github.com/Martindelosrios/cosmic-kite +https://github.com/ropensci/ritis +https://github.com/stevertaylor/gw_pta_emulator +https://github.com/JeffLCoughlin/EphemMatch +https://github.com/PacificBiosciences/minorseq +https://github.com/hveerten/katu +https://github.com/BenWibking/quokka +https://github.com/ropensci/hunspell +https://github.com/henrycousins/gspa +https://github.com/jonzink/EDI-Vetter +https://github.com/vembrane/vembrane +https://github.com/berenslab/MorphoPy +https://github.com/yangyanli/DO-Conv +https://github.com/vimc/orderly +https://github.com/VChristiaens/vcal_sphere +https://github.com/ToHanwei/Genome2OR +https://github.com/ropensci/coder +https://github.com/COINtoolbox/DRACULA +https://github.com/ChristopherWilks/megadepth +https://github.com/pysam-developers/pysam +https://github.com/Astroua/SCIMES +https://github.com/astro-informatics/DarkMappy +https://github.com/ropensci/tesseract +https://github.com/astropy/astroquery +https://github.com/MorgansLab/OSCILOS_long +https://github.com/NLeSC/scriptcwl +https://github.com/ropensci/rfishbase +https://github.com/AemulusProject/bias_emulator +https://github.com/ropensci/nbaR +https://github.com/fritzsedlazeck/Sniffles +https://github.com/marbl/Winnowmap +https://github.com/benallard/galileo +https://github.com/oliverphilcox/HIPSTER +https://github.com/biolab-unige/nifti2dicom +https://github.com/H-E-L-P/XID_plus +https://github.com/fogellab/multiWGCNA +https://github.com/AlexandrosAntoniadis/ODUSSEAS +https://github.com/seheonoh/baygaud +https://github.com/Trovemaster/exocross +https://github.com/ropensci/taxize +https://github.com/MD-Studio/cerulean +https://github.com/CosmoStatGW/WF4Py +https://github.com/CosmoStat/mccd +https://github.com/ogotoh/spaln +https://github.com/ParaFly/ParaFly +https://github.com/astrom-tom/dfitspy +https://github.com/johnschwenck/bp +https://github.com/rice-solar-physics/EBTEL +https://github.com/steineggerlab/foldseek +https://github.com/ropensci/SymbiotaR2 +https://github.com/refresh-bio/agc +https://github.com/ArgonneCPAC/diffmah https://github.com/BackmanLab/PWSpy -https://github.com/cistib/origami +https://github.com/franpoz/SHERLOCK +https://github.com/mrc-ide/sircovid +https://github.com/vgl-hub/gfastats +https://github.com/gpertea/cdbfasta https://github.com/bertrandplez/Turbospectrum2019 -https://github.com/mgckind/SparsePz -https://github.com/MaudeDavidLab/GMEmbeddings -https://github.com/husseinaluie/FlowSieve -https://github.com/LTLA/gesel.js -https://github.com/JuliaOcean/AIBECS.jl -https://github.com/ropensci/UCSCXenaTools -https://github.com/gigjozsa/tirific -https://github.com/ctSkennerton/minced -https://github.com/ropensci/pubchunks -https://github.com/exciting/excitingtools -https://github.com/barklem/mswavef -https://github.com/klevis-a/kinematics-vis -https://github.com/NLeSC/PattyData -https://github.com/indrops/indrops -https://github.com/tanner-trickle/EXCEED-DM -https://github.com/BDI-pathogens/OpenABM-Covid19-model-paper -https://github.com/jacobblum/simDRIFT -https://github.com/pavanvyn/triple-stability -https://github.com/ydLiu-HIT/deSALT -https://github.com/aothmane-control/Algebraic-differentiators -https://github.com/asntech/intervene -https://github.com/ridgelab/rampAtlas -https://github.com/haoharryfeng/NeuCA -https://github.com/ttgump/scDeepCluster_pytorch -https://github.com/rx-li/EasyCellType -https://github.com/alicia-ziying-yang/conTEXT-explorer -https://github.com/benjaminbolling/DynaGUI -https://github.com/StingraySoftware/HENDRICS -https://github.com/pysal/spopt -https://github.com/philbull/RadioFisher -https://github.com/tkonolige/city2ba -https://github.com/jamescasbon/PyVCF -https://github.com/debbiemarkslab/plmc -https://github.com/daddeptr/Needlets -https://github.com/ArkajyotiSaha/RandomForestsGLS -https://github.com/RuiningZHAO/wcpy -https://github.com/JGCRI/rfasst -https://github.com/lanl/CosmicEmu -https://github.com/hpc4cmb/toast -https://github.com/vpc-ccg/calib -https://github.com/abs2k12/COCOA -https://github.com/sonny-harman/snowball -https://github.com/BiodataAnalysisGroup/kmerAnalyzer -https://github.com/calboo/Potential_Field_Calculator -https://github.com/agshumate/LiftoffTools -https://github.com/artic-network/readucks -https://github.com/studla/RYUTO -https://github.com/NCAR/NCAR-Classic-Libraries-for-Geophysics -https://github.com/WGS-TB/MentaLiST -https://github.com/NLeSC/OCTSegmentation -https://github.com/ginolhac/mapDamage -https://github.com/BezuidenhoutMC/SeeKAT -https://github.com/ExoplanetML/Nigraha -https://github.com/javicarron/mtneedlet -https://github.com/BrianAronson/birankr -https://github.com/lys-devel/lys -https://github.com/jpcoles/mosaic -https://github.com/rcsb/mmtf-python -https://github.com/GambitBSM/gambit_1.3 -https://github.com/rribeiro-sci/pygomodo -https://github.com/lorenzo-rovigatti/oxDNA -https://github.com/fkeruzore/panco2 -https://github.com/pangenome/smoothxg -https://github.com/DOnghiaGroup/MGwave -https://github.com/ismael-mendoza/ShapeMeasurementFisherFormalism -https://github.com/alan-turing-institute/monitoring-ecosystem-resilience -https://github.com/bioexcel/biobb_wf_flexdyn -https://github.com/HorvathLab/ReQTL -https://github.com/altjerue/paramo -https://github.com/Filter-Bubble/stroll -https://github.com/RichardMoot/LinearOne -https://github.com/silburt/DeepMoon -https://github.com/mfem/mfem -https://github.com/nlppln/nlppln -https://github.com/ropensci/MODIStsp -https://github.com/ropensci/antanym -https://github.com/MorgansLab/OSCILOS_long -https://github.com/CBIIT-CGBB/gcMECM -https://github.com/asgr/ProSpect -https://github.com/KorfLab/SNAP -https://github.com/lanzen/ampliconnoise -https://github.com/jobovy/segueSelect -https://github.com/dcorre/otrain -https://github.com/EnricoCorsaro/DIAMONDS -https://github.com/exosports/BART -https://github.com/patscott/DDCalc -https://github.com/florisvb/PyNumDiff -https://github.com/danielemichilli/SpS -https://github.com/ropensci/rgpdd -https://github.com/mbonav/Exo_DMC -https://github.com/mrc-ide/global-lmic-reports-orderly -https://github.com/copasi/basico -https://github.com/ropensci/rgbif -https://github.com/CMakePP/CMakePPLang -https://github.com/ICRAR/daliuge -https://github.com/OSS-Lab/ChemChaste -https://github.com/ropensci/phonfieldwork -https://github.com/cosmo-ethz/hide -https://github.com/desmid/mview -https://github.com/mrvollger/fibertools-rs -https://github.com/beastraban/INSANE -https://github.com/antoinediez/Sisyphe -https://github.com/v-morello/iqrm -https://github.com/amanchokshi/EMBERS -https://github.com/hfarias/mask_galaxy -https://github.com/genomehubs/goat-cli -https://github.com/3D-e-Chem/knime-testflow -https://github.com/MikeSWang/Harmonia -https://github.com/difuture-lmu/dsBinVal -https://github.com/mrc-ide/EpiEstim -https://github.com/kennethcarrell/ATARRI -https://github.com/viromelab/tracespipe -https://github.com/bareid/cosmoxi2d -https://github.com/ropensci/visdat -https://github.com/mtazzari/uvplot -https://github.com/DJArmstrong/TransitSOM -https://github.com/BaroudLab/Griottes -https://github.com/florian-lienhard/MM-LSD -https://github.com/bacpop/pp-sketchlib -https://github.com/champsproject/ldds -https://github.com/Joost987/MONDPMesh -https://github.com/spacetelescope/mirage -https://github.com/jobovy/simple-m2m -https://github.com/Computational-NeuroGenetics/deMeta-beta -https://github.com/jteutenberg/downpore -https://github.com/telegraphic/PyGSM -https://github.com/gpertea/gclib -https://github.com/karlotness/adrt -https://github.com/OSeMOSYS/otoole -https://github.com/surhh/nfitsview -https://github.com/andycasey/sick -https://github.com/bio-ontology-research-group/deepgoplus -https://github.com/ropensci/rtika -https://github.com/wmglab-duke/ascent -https://github.com/HajimeKawahara/exojax -https://github.com/PDB-REDO/density-fitness -https://github.com/mzechmeister/serval -https://github.com/google/caliban -https://github.com/jmason86/James-s-EVE-Dimming-Index-JEDI -https://github.com/bio-tools/biotoolsSum -https://github.com/exoclime/FastChem -https://github.com/vortex-exoplanet/VIP -https://github.com/JustinYKC/FEPOPS -https://github.com/bmoster/emerge -https://github.com/hknd23/idcempy -https://github.com/vsoch/gridtest -https://github.com/ThomasEdwardRiley/xpsi-pre-transfer -https://github.com/jo276/EvapMass -https://github.com/Gaius-Augustus/BRAKER -https://github.com/arabic-digital-humanities/adhtools -https://github.com/SebastianBocquet/pygtc -https://github.com/mdolab/pygeo -https://github.com/v-morello/riptide -https://github.com/R-Vessel-X/SlicerRVXLiverSegmentation -https://github.com/JanCBrammer/biopeaks -https://github.com/pmelchior/skylens -https://github.com/SunilAnandatheertha/PXO -https://github.com/jhayer/baargin -https://github.com/metaOmics/MetaPath -https://github.com/GooglingTheCancerGenome/sv-gen -https://github.com/tud-hri/travia -https://github.com/isovic/graphmap -https://github.com/LTeinturier/Cloud-Killer- -https://github.com/AdrianA-T/cytomorph -https://github.com/qboxcode/qbox-public -https://github.com/bids-standard/bids-validator -https://github.com/bshoshany/OGRe -https://github.com/rdpstaff/ReadSeq -https://github.com/SPARC-FAIR-Codeathon/aqua -https://github.com/biofold/PhD-SNPg -https://github.com/anmolter/XLUR -https://github.com/adcameron/ffancy -https://github.com/stevengj/nlopt -https://github.com/fkiwy/unTimely_Catalog_explorer -https://github.com/GunzIvan28/rMAP -https://github.com/damonge/schNell -https://github.com/ylab-hi/ScanITD -https://github.com/eggplantbren/RJObject -https://github.com/facebookresearch/faiss -https://github.com/ropensci/finch -https://github.com/biocore-ntnu/pyranges -https://github.com/minaskar/pocomc -https://github.com/JuliaArrays/BlockArrays.jl -https://github.com/Xia-Yijie/Xponge -https://github.com/sevenstarknight/OCDetector -https://github.com/kkjawz/coref-ee -https://github.com/broadinstitute/wot -https://github.com/ropensci/rerddap -https://github.com/argiopetech/base -https://github.com/dbuscher/pois -https://github.com/RuthAngus/stardate -https://github.com/matteolucchini1/BHJet -https://github.com/egpbos/barcode -https://github.com/IndrajeetPatil/ggstatsplot -https://github.com/mlujnie/simple -https://github.com/vedantchandra/wdtools -https://github.com/2decomp-fft/2decomp-fft -https://github.com/halomod/hmf -https://github.com/carpyncho/carpyncho-py -https://github.com/lh3/miniasm -https://github.com/fcastagna/preprofit -https://github.com/felixbosco/KeplerFit -https://github.com/CSB5/lofreq -https://github.com/octapps/octapps -https://github.com/ReGIS-org/regis-v2 -https://github.com/Gaius-Augustus/GALBA -https://github.com/miguelcarcamov/csromer -https://github.com/brettc/partitionfinder -https://github.com/eucp-project/atlas -https://github.com/ropensci/ghql -https://github.com/igvteam/igv-reports -https://github.com/IanevskiAleksandr/sc-type -https://github.com/AdmiralenOla/Scoary -https://github.com/bcalden/ClusterPyXT -https://github.com/damonge/CRIME -https://github.com/mtakahiro/gsf -https://github.com/dankelley/oce -https://github.com/wadpac/GGIR -https://github.com/transientskp/lpf -https://github.com/ImperialCollegeLondon/ICLOCS -https://github.com/hsso/crete -https://github.com/mms-fcul/PypKa -https://github.com/pyccel/pyccel -https://github.com/shadden/celmech -https://github.com/PMBio/spatialde2-paper -https://github.com/eliotayache/GAMMA -https://github.com/jGetMove/jGetMove -https://github.com/SofieVG/FlowSOM -https://github.com/klho/FLAM -https://github.com/linDing-groups/Deep-4mCW2V -https://github.com/MannLabs/alphapept -https://github.com/keurfonluu/toughio +https://github.com/DeepRank/iScore +https://github.com/logological/gpp +https://github.com/elsner/arkcos +https://github.com/shenwei356/seqkit +https://github.com/fmihpc/vlasiator +https://github.com/afeinstein20/stella +https://github.com/wullm/zwindstroom +https://github.com/statOmics/tradeSeqPaper +https://github.com/ropensci/rcol +https://github.com/Samreay/ChainConsumer +https://github.com/TheJacksonLaboratory/drug-synergy +https://github.com/alvinxhan/Phydelity +https://github.com/soylentdeen/MoogStokes +https://github.com/ntveem/sterile-dm https://github.com/BGI-Qingdao/TGS-GapCloser -https://github.com/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework -https://github.com/wangjun1996/VisFeature -https://github.com/kyleaoman/martini -https://github.com/AA-ALERT/AstroData -https://github.com/sevenstarknight/SSMM -https://github.com/mariakotouza/TRIP-Tool -https://github.com/LindaNab/mecor -https://github.com/Onogi/VIGoR -https://github.com/BMILAB/scLINE -https://github.com/uclchem/Chemulator -https://github.com/samaygarg/fuelcell -https://github.com/NLeSC/SalientDetector-python -https://github.com/montilab/nf-gwas-pipeline -https://github.com/fchuffar/epimedtools -https://github.com/dansarie/sboxgates -https://github.com/davidgardenier/frbpoppy -https://github.com/ttgump/scDHMap -https://github.com/RECETOX/recetox-msfinder -https://github.com/exoclime/THOR -https://github.com/dglaeser/gridformat -https://github.com/STEllAR-GROUP/hpx -https://github.com/JuliaSmoothOptimizers/DCISolver.jl -https://github.com/msolpera/pyUPMASK -https://github.com/sczesla/PyAstronomy -https://github.com/ropensci/bold -https://github.com/harrispopgen/mutyper -https://github.com/vsoch/citelang -https://github.com/htjb/margarine -https://github.com/ncbi/ncbi-vdb -https://github.com/ropensci/lingtypology -https://github.com/jimmink/argslab -https://github.com/ropensci/pdftools -https://github.com/UUDigitalHumanitieslab/texcavator -https://github.com/Yu606/odyssey -https://github.com/ropensci/USAboundaries -https://github.com/jesford/cluster-lensing -https://github.com/DreamCloud-Project/AMALTHEA-SimGrid -https://github.com/ELELAB/LipidDyn -https://github.com/AngusWright/LAMBDAR -https://github.com/scikit-learn-contrib/hdbscan -https://github.com/ropensci/rdefra -https://github.com/RosettaCommons/RFDesign -https://github.com/marcelm/cutadapt -https://github.com/abmantz/lmc -https://github.com/ProjectPyRhO/PyRhO -https://github.com/blackrim/phyutility -https://github.com/AnantharamanLab/vRhyme -https://github.com/mattyowl/fitScalingRelation -https://github.com/mingzehuang/latentcor -https://github.com/moranegg/deposit-template -https://github.com/temken/Dirac_vs_Majorana -https://github.com/MichielCottaar/velbin -https://github.com/AstroAccelerateOrg/astro-accelerate -https://github.com/VNNikolaidis/nnlib2Rcpp -https://github.com/gramos/imagetooth +https://github.com/asgr/NFWdist +https://github.com/cabb99/open3spn2 +https://github.com/nespinoza/limb-darkening +https://github.com/GeneDx/scramble +https://github.com/GeoffDuniam/FITS-Code-Examples +https://github.com/LTeinturier/Cloud-Killer- +https://github.com/WMD-group/CarrierCapture.jl +https://github.com/ropensci/traits +https://github.com/stermzsofi/TiDE +https://github.com/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022 +https://github.com/lilyminium/psiresp +https://github.com/forrest-lab/scMatch +https://github.com/davidebolo1993/VISOR +https://github.com/patrickfuchs/buildH +https://github.com/ICB-DCM/pyABC +https://github.com/thachnguyen/CRISPRnano +https://github.com/silx-kit/pyFAI +https://github.com/ropensci/baRcodeR +https://github.com/gigjozsa/tirific +https://github.com/iancze/DiskJockey +https://github.com/pawni/BayesByHypernet +https://github.com/thejasvibr/bat_beamshapes +https://github.com/ihmwg/python-modelcif +https://github.com/deeprob/ThioesteraseEnzymeSpecificity +https://github.com/SotaYoshida/NuclearToolkit.jl +https://github.com/c-white/blacklight +https://github.com/gabraham/flashpca +https://github.com/FEniCS/ffcx +https://github.com/ACTCollaboration/zCluster +https://github.com/OpenMDAO/dymos +https://github.com/bionlplab/GlaucomaNet +https://github.com/alan-turing-institute/DetectorChecker +https://github.com/bihealth/sodar_core +https://github.com/ropensci/drake +https://github.com/linuxscout/pyarabic +https://github.com/jakeret/abcpmc +https://github.com/txopen/histoc +https://github.com/duffell/RT1D +https://github.com/circuitgraph/circuitgraph +https://github.com/fairtracks/omnipy_examples +https://github.com/DataBiosphere/wdl-parsers +https://github.com/liuhong-jia/scAnno +https://github.com/forceflow1049/PhAst +https://github.com/candYgene/pbg-ld +https://github.com/marius311/cosmoslik +https://github.com/Ayuei/DeBEIR +https://github.com/seclark/RHT +https://github.com/ilaudy/PIAO +https://github.com/benjaminbolling/DynaGUI +https://github.com/exoclime/Helios-r2 +https://github.com/biocore-ntnu/ncls +https://github.com/ropensci/restez +https://github.com/mrc-ide/covid19-forecasts-orderly +https://github.com/jakevdp/wpca +https://github.com/spacetelescope/specview +https://github.com/drzeeshanahmed/JWES-Visual +https://github.com/ocean-eddy-cpt/gcm-filters +https://github.com/ropensci/RNeXML +https://github.com/Multiversario/satcand +https://github.com/zhongqiu1245/CCS-Net +https://github.com/soylentdeen/CounterPoint +https://github.com/astrogilda/mirkwood +https://github.com/prmunday/Immunolyser +https://github.com/tibordome/cosmic_profiles +https://github.com/lsds/LightSaber +https://github.com/exciting/excitingtools +https://github.com/codemeleon/seqPanther +https://github.com/NLeSC/MAGMa +https://github.com/IMMM-SFA/tell +https://github.com/tseemann/snp-dists +https://github.com/NLeSC/DiVE +https://github.com/lys-devel/lys +https://github.com/AnitaPetzler/AMOEBA +https://github.com/metagentools/GraphBin +https://github.com/calebclass/Shiny-NanoTube +https://github.com/ropensci/fingertipsR +https://github.com/mlarichardson/CosmosCanvas +https://github.com/mmahmoudian/sivs +https://github.com/GooglingTheCancerGenome/sv-channels +https://github.com/auctus-team/pycapacity +https://github.com/Jacks0nJ/PyFPT +https://github.com/HLasse/TextDescriptives +https://github.com/timstaley/chimenea +https://github.com/NLeSC/ShiCo +https://github.com/USU-Analytics-Solution-Center/Bruno.jl +https://github.com/SouthGreenPlatform/PyRice +https://github.com/0xCoto/Virgo +https://github.com/EmmanuelSchaan/ThumbStack +https://github.com/tpapp/MCMCDiagnostics.jl +https://github.com/aL3x-O-o-Hung/CAT-Net +https://github.com/BarquistLab/mason_paper +https://github.com/surf-eds/one-button-compute +https://github.com/molscat/molscat +https://github.com/JasonYangShadow/lpmx +https://github.com/RafiKueng/SpaghettiLens +https://github.com/bbuchfink/diamond +https://github.com/vferat/pycrostates +https://github.com/ruggiero/clustep +https://github.com/NLeSC-GO-common-infrastructure/marzipan +https://github.com/Michalychforever/AsPy +https://github.com/jpmens/jo +https://github.com/ropensci/tif +https://github.com/spacetelescope/pystortion +https://github.com/siriobelli/flame +https://github.com/pynbody/pynbody +https://github.com/katholt/Kaptive +https://github.com/skendrew/milkywayproject_triggering +https://github.com/nickhand/pyRSD +https://github.com/LiuJJ0327/CCPE +https://github.com/odelaneau/GLIMPSE +https://github.com/nanoporetech/pychopper +https://github.com/astro-informatics/flaglet-archive +https://github.com/brettc/partitionfinder +https://github.com/UCD4IDS/WaveletsExt.jl +https://github.com/PopMedNet-Team/popmednet +https://github.com/ropensci/wellknown +https://github.com/danielenricocahall/elephas +https://github.com/twosixlabs/magicwand-datatool +https://github.com/sciapp/sampledb +https://github.com/COMBINE-lab/pufferfish +https://github.com/labxscut/ksak +https://github.com/YinanZhao21/SOAP_GPU +https://github.com/IftachSadeh/ANNZ +https://github.com/ZhaiLab-SUSTech/FLEPSeq +https://github.com/ropensci/pixelclasser +https://github.com/bedops/bedops +https://github.com/ADAH-EviDENce/evidence +https://github.com/pysal/spopt +https://github.com/jdeast/EXOFASTv2 +https://github.com/GabrielaCR/AGNfitter +https://github.com/ablab/nerpa +https://github.com/popgenmethods/smcpp +https://github.com/votca/xtp +https://github.com/ropensci/geojsonlint +https://github.com/icecube/TauRunner +https://github.com/xavierdidelot/ClonalOrigin +https://github.com/GalacticDynamics-Oxford/Agama +https://github.com/KIT-MBS/pyrexMD +https://github.com/Acellera/htmd +https://github.com/bbfrederick/stabilitycalc +https://github.com/DeepRank/PSSMGen +https://github.com/cma2015/iwa-miRNA +https://github.com/bd-j/sedpy +https://github.com/rrwick/Unicycler +https://github.com/chainsawriot/sweater +https://github.com/ropensci/exoplanets +https://github.com/landlab/landlab +https://github.com/actris-cloudnet/cloudnetpy +https://github.com/philbull/RadioFisher +https://github.com/alan-turing-institute/monitoring-ecosystem-resilience +https://github.com/kathlandgren/SWAMPE +https://github.com/chianti-atomic/ChiantiPy +https://github.com/Mat-dp/mat-dp-core +https://github.com/smaret/thindisk +https://github.com/PixelgenTechnologies/pixelator +https://github.com/amerand/PMOIRED +https://github.com/ggonnella/fastsubtrees +https://github.com/MichaelCretignier/Rassine_public +https://github.com/nevrome/bleiglas +https://github.com/CenterForMedicalGeneticsGhent/Hopla +https://github.com/SPARC-FAIR-Codeathon/aqua +https://github.com/julie-forman-kay-lab/SPyCi-PDB +https://github.com/RTIP/artip +https://github.com/Computational-NeuroGenetics/deMeta-beta +https://github.com/mraveri/tensiometer +https://github.com/alejandrobll/py-sphviewer +https://github.com/ropensci/dbparser +https://github.com/ncbi/ngs +https://github.com/jmd-dk/concept +https://github.com/WGS-TB/MentaLiST +https://github.com/kavonrtep/dante +https://github.com/astromer-science/main-code +https://github.com/NuSpaceSim/nupyprop +https://github.com/sdrastro/NWelch +https://github.com/dieghernan/tidyterra +https://github.com/jakobherpich/pyICs +https://github.com/a-slide/pycoQC +https://github.com/radio-astro-tools/spectral-cube +https://github.com/3D-e-Chem/kripodb +https://github.com/wdecoster/nanocomp +https://github.com/sibyllema/Fast-Multiscale-Diffusion-on-Graphs +https://github.com/nf-core/viralrecon +https://github.com/radifar/PyPLIF-HIPPOS +https://github.com/ropensci/vcr +https://github.com/NLeSC/SalientDetector-matlab +https://github.com/esheldon/ngmix +https://github.com/lsds/Teechain +https://github.com/spacetelescope/synphot_refactor +https://github.com/mazzalab/pyntacle +https://github.com/netrias/rnassist +https://github.com/wlloyduw/ContainerProfiler +https://github.com/SarveshVGharat/Plages-Identification +https://github.com/mofanv/darknetz +https://github.com/RBrearton/islatu +https://github.com/samtools/samtools https://github.com/COINtoolbox/ActSNClass -https://github.com/ropensci-review-tools/pkgstats -https://github.com/MOSAICS-NIH/MOSAICS -https://github.com/chapmanb/bcbio.variation +https://github.com/SWIFTSIM/swiftsimio +https://github.com/jeschaef/Graph4Med +https://github.com/GoekeLab/xpore +https://github.com/UAMCAntwerpen/LEADD +https://github.com/brian-lau/MatlabAUC +https://github.com/sdss/marvin +https://github.com/fgbuster/fgbuster +https://github.com/martin3141/spant +https://github.com/BioinfoUNIBA/REDItools2 +https://github.com/stamatak/ExaML +https://github.com/omuse-geoscience/omuse +https://github.com/pynucastro/pynucastro +https://github.com/ropensci/zbank +https://github.com/ropensci/MODISTools +https://github.com/tomasstolker/species +https://github.com/vsoch/gridtest +https://github.com/LSSTDESC/NaMaster +https://github.com/numpy/numpy +https://github.com/Starlink/hds-v5 +https://github.com/2decomp-fft/2decomp-fft +https://github.com/JohannesBuchner/BXA +https://github.com/dfm/photodynam +https://github.com/pierrepo/autoclassweb +https://github.com/dstndstn/tractor +https://github.com/seqan/lara +https://github.com/aprsa/ebai +https://github.com/ropensci/seasl +https://github.com/JuliaArrays/InfiniteArrays.jl +https://github.com/mpievolbio-scicomp/cancer_sim +https://github.com/qboxcode/qbox-public +https://github.com/krab1k/ChargeFW2 +https://github.com/connectomicslab/connectomemapper3 +https://github.com/pyBRAvo/pyBRAvo +https://github.com/cy-xu/cosmic-conn +https://github.com/RealTimeGenomics/rtg-tools +https://github.com/warrickball/tomso +https://github.com/IanHeywood/oxkat +https://github.com/teuben/nemo +https://github.com/aconley/simple_cosfitter +https://github.com/YaleTHz/nelly +https://github.com/njcuk9999/apero-drs +https://github.com/LabTranslationalArchitectomics/riboWaltz +https://github.com/ekg/seqwish +https://github.com/pyvisa/pyvisa +https://github.com/mad-lab-fau/imucal +https://github.com/lofar-astron/RMextract +https://github.com/QEF/q-e +https://github.com/AA-ALERT/frbcatdb +https://github.com/ndaniyar/aphot +https://github.com/MRCIEU/metaboprep +https://github.com/sdnjly/WSDL-AD +https://github.com/kmsurrao/reMASTERed +https://github.com/martinjzhang/scDRS +https://github.com/atmos-cloud-sim-uj/PySDM +https://github.com/lwang-astro/PeTar +https://github.com/lu-yizhou/ClusterSeg +https://github.com/ComtekAdvancedStructures/cmstatr +https://github.com/eggplantbren/RMHB +https://github.com/biolab/orange3 +https://github.com/jmcbroome/BTE +https://github.com/ELELAB/RosettaDDGPrediction +https://github.com/mbursa/disk-models +https://github.com/ropensci/rsnps +https://github.com/olivecha/guitarsounds +https://github.com/DRMacIver/shrinkray +https://github.com/TNEL-UCSD/autolfads-deploy +https://github.com/bioAI-Oslo/Spikeometric +https://github.com/doriancazeneuve/ODNet +https://github.com/mdolab/pygeo +https://github.com/ESMValGroup/ESMValTool +https://github.com/elizabethnewman/hessQuik +https://github.com/astroboylrx/Rubble +https://github.com/SofieVG/FlowSOM +https://github.com/TPI-Immunogenetics/igmat +https://github.com/mp3guy/ElasticFusion +https://github.com/ropensci/rdataretriever +https://github.com/imcgreer/simqso +https://github.com/AstroUGent/shadowfax +https://github.com/RasmussenLab/vamb +https://github.com/AMReX-Astro/wdmerger +https://github.com/daler/pybedtools +https://github.com/biomedia-mira/blast-ct +https://github.com/candYgene/QTM +https://github.com/pcubillos/repack +https://github.com/arnikz/PIQMIe +https://github.com/bradkav/verne +https://github.com/NIFTI-Imaging/nifti_clib +https://github.com/jeffzhen/omnical +https://github.com/pengweixing/FACT +https://github.com/Social-Evolution-and-Behavior/anTraX +https://github.com/asgr/ProFound +https://github.com/lanl/CosmicEmu +https://github.com/minaskar/pocomc +https://github.com/Julian/jsonschema +https://github.com/Sydney-Informatics-Hub/OmixLitMiner +https://github.com/ropensci/magick +https://github.com/MAnalytics/akmedoids +https://github.com/petigura/terra +https://github.com/chenwuperth/rgz_rcnn +https://github.com/astrorama/SourceXtractorPlusPlus +https://github.com/ropensci/rrlite +https://github.com/DochtermannLab/BehavioralHeritability +https://github.com/sverhoeven/docker-cartodb +https://github.com/cas-bioinf/rboAnalyzer +https://github.com/jkrogager/VoigtFit +https://github.com/ViennaRNA/RNAblueprint +https://github.com/saopicc/killMS +https://github.com/wadpac/GGIR +https://github.com/asgr/hyper.fit +https://github.com/FZJ-IEK3-VSA/LoadProfileGenerator +https://github.com/danielkoll/PyRADS +https://github.com/akdeniz-uzay/A-Track +https://github.com/SuLab/Wikidata-phenomizer +https://github.com/rajeshmondal18/N-body https://github.com/lbcb-sci/raven -https://github.com/ropensci/readODS -https://github.com/danielemelini/ALMA3 -https://github.com/LSSTDESC/descqa -https://github.com/IlianPihlajamaa/ModeCouplingTheory.jl -https://github.com/krober10nd/SeismicMesh -https://github.com/wf4ever/astrotaverna -https://github.com/Sarc-Graph/sarcgraph -https://github.com/rhdtownsend/gyre -https://github.com/wdecoster/nanostat -https://github.com/scrook/neuroml-db -https://github.com/mpc-bioinformatics/CalibraCurve -https://github.com/emhuff/Balrog -https://github.com/oruhnau/when2heat -https://github.com/ACEnglish/truvari -https://github.com/maickrau/GraphAligner -https://github.com/DirectDM/directdm-py -https://github.com/ropensci/rnaturalearth -https://github.com/AOtools/aotools -https://github.com/blind-contours/CVtreeMLE -https://github.com/soedinglab/spacepharer -https://github.com/pcingola/SnpEff -https://github.com/OncoRNALab/CiLiQuant -https://github.com/cschreib/egg -https://github.com/hsocasnavarro/NICOLE -https://github.com/odelaneau/GLIMPSE -https://github.com/RTIInternational/gobbli -https://github.com/3D-e-Chem/knime-klifs -https://github.com/nextgenusfs/funannotate -https://github.com/SotaYoshida/NuclearToolkit.jl -https://github.com/twesterhout/lattice-symmetries -https://github.com/ArtificialStellarPopulations/ArtPop -https://github.com/cog-imperial/entmoot -https://github.com/pscicluna/precision -https://github.com/schochastics/graphlayouts -https://github.com/minaskar/hankl -https://github.com/ropensci/Rclean -https://github.com/carlosborca/CrystaLattE -https://github.com/kushaltirumala/WaldoInSky -https://github.com/ofionnad/radiowinds -https://github.com/gpantel/MolPainter -https://github.com/mikhailklassen/protostellar_evolution -https://github.com/singularityhub/singularity-compose -https://github.com/jsobeck/MOOG_SCAT -https://github.com/stemangiola/tidyHeatmap -https://github.com/connor-lab/vapor -https://github.com/Box-Tools/BoxKit -https://github.com/lammps/lammps -https://github.com/bic-nirrh/precocity -https://github.com/AMReX-Astro/MAESTRO -https://github.com/getzlab/rnaseqc -https://github.com/brandon-rhodes/python-jplephem -https://github.com/herjy/SLIT +https://github.com/ivastar/clear +https://github.com/casacore/casacore +https://github.com/DICP1810/SpotLink +https://github.com/pennsignals/chime +https://github.com/GalSim-developers/GalSim +https://github.com/orcasgit/python-fitbit +https://github.com/brentp/vcfanno +https://github.com/lgrcia/prose +https://github.com/nsoranzo/sspace_basic +https://github.com/lyf222/alpconv +https://github.com/sunpy/ndcube +https://github.com/shenwei356/csvtk +https://github.com/CornellLabofOrnithology/auk +https://github.com/Theano/Theano +https://github.com/alstat/ALUES +https://github.com/deeptools/pyBigWig +https://github.com/ropensci/spelling +https://github.com/ropensci/EML +https://github.com/TimothyADavis/KinMSpy +https://github.com/Ensembl/ensembl-vep +https://github.com/metageni/FOCUS +https://github.com/mrc-ide/covid-sim +https://github.com/IRCAD/camp +https://github.com/PabloVD/HAYASHI +https://github.com/tobiasrausch/alfred +https://github.com/hnikaein/stark +https://github.com/atomneb/AtomNeb-py +https://github.com/iraf-community/iraf +https://github.com/mkplummer/Imber +https://github.com/gbouras13/plassembler +https://github.com/rhyspoulton/OrbWeaver +https://github.com/musevlt/muse-psfr +https://github.com/rabix/cwl-format +https://github.com/nonlocalmodels/NLMech +https://github.com/scotthgn/AGNvar +https://github.com/bmorris3/fleck +https://github.com/debian-tex/texlive-nonbin +https://github.com/ropensci/rbhl +https://github.com/achael/eht-imaging +https://github.com/sib-swiss/glittr +https://github.com/bcgsc/ntCard +https://github.com/c-zhou/yahs +https://github.com/athulpg007/AMAT +https://github.com/UK-Digital-Heart-Project/4Dsurvival +https://github.com/lydialucchesi/Vizumap +https://github.com/WMD-group/hybrid-perovskites +https://github.com/daddeptr/Needlets +https://github.com/arumugamlab/msamtools +https://github.com/broadinstitute/picard +https://github.com/wdecoster/nanoQC +https://github.com/MCTwo/MCMAC +https://github.com/raredd/kmdata +https://github.com/C-Briddon/SELCIE +https://github.com/PacificBiosciences/pbcopper +https://github.com/CMakePP/CMinx +https://github.com/pypeit/PypeIt +https://github.com/amoradinejad/limHaloPT +https://github.com/ericsteinbring/World_Observatory +https://github.com/synchrofit/synchrofit +https://github.com/fpavogt/E0102-VR +https://github.com/ctSkennerton/crass +https://github.com/wbalmer/backtrack +https://github.com/asancpt/caffsim +https://github.com/arshajii/ema +https://github.com/dellytools/sansa +https://github.com/hsergi/Roman_Coronagraph_ETC +https://github.com/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report +https://github.com/ratt-ru/montblanc +https://github.com/ropensci/hoardr +https://github.com/yiwenstat/MCPCA_PopGen +https://github.com/NLeSC/python-pcl +https://github.com/husonlab/dendroscope3 +https://github.com/askap-craco/CELEBI +https://github.com/siara-cc/Unishox2 +https://github.com/weiliu123/PCLassoReg +https://github.com/hues-platform/cesar-p-core +https://github.com/lczech/gappa +https://github.com/jspsych/jsPsych +https://github.com/ropensci/biomartr +https://github.com/DEIB-GECO/ReRa +https://github.com/nabeelre/NIMBLE +https://github.com/Gaius-Augustus/BRAKER +https://github.com/facom/BHMcalc +https://github.com/VirtualPlanetaryLaboratory/atmos +https://github.com/ashleychontos/pySYD +https://github.com/santeripuranen/SpydrPick +https://github.com/jrenaud90/TidalPy +https://github.com/mariakotouza/TRIP-Tool +https://github.com/anchal-009/SAVED21cm +https://github.com/maxbernyk/lightcone +https://github.com/dbuscher/pois +https://github.com/E3SM-Project/gdess +https://github.com/fbreitwieser/krakenuniq +https://github.com/scipion-em/scipion-em-continuousflex +https://github.com/NarlikarLab/exoDIVERSITY https://github.com/EC-Earth/ece2cmor3 -https://github.com/benallard/galileo -https://github.com/jumphone/InferLoop -https://github.com/eldariont/svim -https://github.com/fccoelho/epigrass -https://github.com/seclark/RHT -https://github.com/fwhigh/stellar-locus-regression -https://github.com/kbarbary/nestle -https://github.com/EnsembleGovServices/kamodo-core -https://github.com/yuliang419/Astronet-Vetting -https://github.com/DorianDepriester/MTEX2Gmsh -https://github.com/asancpt/caffsim -https://github.com/zonca/python-qucs -https://github.com/kateharborne/SimSpin -https://github.com/cire-thk/BifacialSimu -https://github.com/schochastics/netrankr -https://github.com/AFD-Illinois/iharm3d -https://github.com/KeplerGO/pyke -https://github.com/rodluger/everest -https://github.com/candebellavita/vkompth -https://github.com/NLeSC/boatswain -https://github.com/wdecoster/nanocomp -https://github.com/hiddenSymmetries/simsopt -https://github.com/rjtanner/StarburstPy -https://github.com/benvanwerkhoven/kernel_tuner -https://github.com/christophuv/PeakBot_Example -https://github.com/BIC-MNI/libminc -https://github.com/philres/ngmlr -https://github.com/jboynyc/textnets -https://github.com/ckay314/OSPREI -https://github.com/Someone789/galax2d -https://github.com/DEIB-GECO/genereg -https://github.com/lpantano/seqbuster -https://github.com/bruce-chappell/SunnyNet -https://github.com/ZjuLiangsl/mmkp -https://github.com/ziyewang/MetaBinner -https://github.com/ropensci/ruODK -https://github.com/ziyewang/ARG_SHINE -https://github.com/ropensci/comtradr -https://github.com/ropensci-archive/monkeylearn -https://github.com/ewanbarr/peasoup +https://github.com/dmnfarrell/epitopepredict +https://github.com/liulei/volks2 +https://github.com/ropensci/rromeo +https://github.com/bertrandplez/Turbospectrum_NLTE +https://github.com/andresGranadosC/GalRotpy +https://github.com/jdhenshaw/SCOUSE +https://github.com/GATB/bcalm +https://github.com/jdhenshaw/scousepy +https://github.com/upb-lea/ElectricGrid.jl +https://github.com/Climdyn/qgs +https://github.com/MikeHeiber/Excimontec +https://github.com/spacetelescope/mirage +https://github.com/wokast/RePrimAnd +https://github.com/DeepRank/Deeprank-GNN +https://github.com/tidymodels/stacks +https://github.com/lanl/scico +https://github.com/DrafProject/elmada +https://github.com/JGCRI/rmap +https://github.com/JorenSix/Panako +https://github.com/AIgnesti/PT-REX +https://github.com/justinmathias/isocalcR +https://github.com/Li-Yangyang/LOTUS +https://github.com/AnthonyOfSeattle/pyAscoreValidation +https://github.com/sfeeney/hh0 +https://github.com/tlambert03/pycudadecon +https://github.com/BioComputingUP/ring-pymol +https://github.com/me-manu/gammaALPs +https://github.com/mh-skjelvareid/synaptus +https://github.com/lucabaldini/ixpeobssim +https://github.com/ropensci/mauricer +https://github.com/steven-murray/pydftools +https://github.com/TomKellyGenetics/graphsim +https://github.com/mrbell/fsclean +https://github.com/NLeSC/PattyData +https://github.com/ropensci/USAboundariesData +https://github.com/Single-Cell-Graph-Learning/scSGL +https://github.com/ebellm/pyraf-dbsp +https://github.com/lazzati-astro/MCRaT +https://github.com/ChenYangyao/hipp +https://github.com/U-Alberta/ADaPT-ML +https://github.com/AdriJD/beamconv +https://github.com/fchuffar/epimedtools +https://github.com/raspishake/rsudp +https://github.com/solerjuan/astroHOG +https://github.com/ukoethe/vigra https://github.com/NLeSC/UncertaintyVisualization -https://github.com/ruanjue/wtdbg2 -https://github.com/bfarr/exocartographer -https://github.com/NETL-RIC/URC-Assessment-Method +https://github.com/mikekatz04/BOWIE +https://github.com/zclaytor/kiauhoku +https://github.com/lh3/bgt +https://github.com/mivp/encube +https://github.com/dgerosa/gwdet +https://github.com/andreyshabalin/TwinEQTL +https://github.com/ropensci/ghql +https://github.com/ropensci/binman +https://github.com/pikarpov-LANL/Sapsan +https://github.com/Lnasellentin/DALI +https://github.com/dwkim78/ASTRiDE +https://github.com/regonzar/paravt +https://github.com/manodeep/TesseRACt +https://github.com/ywx649999311/EzTao +https://github.com/seqan/lambda +https://github.com/bow/fsnviz +https://github.com/pmvreeswijk/ZOGY +https://github.com/discsim/frank +https://github.com/potassco/clingo +https://github.com/JLSteenwyk/ggpubfigs +https://github.com/broadinstitute/wot +https://github.com/etal/cnvkit +https://github.com/EddyRivasLab/hmmer +https://github.com/ropensci-archive/reviewer +https://github.com/yangfangs/KPP +https://github.com/tseemann/prokka +https://github.com/legolason/PyQSOFit +https://github.com/obreschkow/dftools +https://github.com/SunilAnandatheertha/PXO +https://github.com/nanoporetech/dorado +https://github.com/jeffdaily/parasail +https://github.com/csabiu/kstat +https://github.com/cschreib/egg +https://github.com/difuture-lmu/dsBinVal +https://github.com/BackofenLab/StoatyDive +https://github.com/dalya/WeirdestGalaxies +https://github.com/wdecoster/nanomath +https://github.com/jeremiah-corrado/fem_2d +https://github.com/caseyjlaw/tpipe +https://github.com/ropensci/rnaturalearthhires +https://github.com/ropensci/nomisr +https://github.com/dmilakovic/QSOSIM10 +https://github.com/NLeSC/eEcology-SMS-reciever +https://github.com/OSSOS/SurveySimulator +https://github.com/ropensci/tarchetypes +https://github.com/DTsuna/CHIPS +https://github.com/ropensci/elastic +https://github.com/mms-fcul/PypKa +https://github.com/eWaterCycle/grpc4bmi +https://github.com/sing-group/seda +https://github.com/jrkerns/pylinac +https://github.com/mscaudill/openseize +https://github.com/fcastagna/JoXSZ +https://github.com/nlesc-sherlock/emma +https://github.com/mbursa/sim5 +https://github.com/ixkael/Delight +https://github.com/Zafiirah13/meercrab +https://github.com/rdpstaff/classifier +https://github.com/mzechmeister/viper +https://github.com/bwoshea/ZEUS-MP_2 +https://github.com/SMTG-UCL/surfaxe +https://github.com/pkestene/ramsesGPU +https://github.com/pinellolab/CRISPRitz +https://github.com/ziotom78/Healpix.jl +https://github.com/fermisurfaces/IFermi +https://github.com/mrtommyb/ktransit +https://github.com/KULL-Centre/DEERpredict +https://github.com/martinlackner/abcvoting +https://github.com/easystats/effectsize +https://github.com/samtools/htsjdk +https://github.com/GENtle-persons/gentle-m +https://github.com/astroumd/miriad +https://github.com/ulilautenschlager/crimp +https://github.com/soedinglab/plass +https://github.com/LeandroOrdonez/explora-vr-dash-client +https://github.com/zonca/dst +https://github.com/e-mental-health/orange-hackathon +https://github.com/tommyau/bamclipper +https://github.com/pmelchior/des-exp-checker +https://github.com/user29A/CCDLAB +https://github.com/xraypy/xraylarch +https://github.com/argiopetech/base +https://github.com/cobilab/altair +https://github.com/Hoohm/CITE-seq-Count +https://github.com/lijing28101/maize_pyrpipe +https://github.com/tylunel/pvpumpingsystem +https://github.com/thomasorb/orcs +https://github.com/hcdenbakker/SalmID +https://github.com/idefix-code/idefix +https://github.com/mikhailklassen/protostellar_evolution +https://github.com/matteobreschi/bajes +https://github.com/ropensci/getlandsat +https://github.com/e-merlin/eMERLIN_CASA_pipeline +https://github.com/grahambell/pymoc +https://github.com/NickMilsonPhysics/BinaryStarSolver +https://github.com/ratt-ru/breizorro +https://github.com/ropensci/sofa +https://github.com/3D-e-Chem/sygma +https://github.com/RichardObi/medigan +https://github.com/moustakas/iSEDfit +https://github.com/abmantz/lmc +https://github.com/jluastro/PopSyCLE +https://github.com/rikenbit/nnTensor +https://github.com/calboo/TAWAS +https://github.com/abinit/abinit +https://github.com/morisUtokyo/uTR +https://github.com/danxhuber/evolstate +https://github.com/weecology/retriever +https://github.com/NoahSailer/FishLSS +https://github.com/vbakis/mrs +https://github.com/Dulab2020/ARMT +https://github.com/PlanetHunters/tkmatrix +https://github.com/mcsiple/mmrefpoints +https://github.com/spacetelescope/specviz +https://github.com/davidgardenier/frbcat +https://github.com/jorisparet/partycls +https://github.com/scotthgn/RELAGN +https://github.com/pavanvidem/chira +https://github.com/mdsteiner/EFAtools +https://github.com/SandyYuan/s3PCF +https://github.com/ZJUFanLab/scTITANS +https://github.com/timoast/signac +https://github.com/jamescasbon/PyVCF +https://github.com/pmelchior/pygmmis +https://github.com/williamjameshandley/fgivenx +https://github.com/willvousden/ptemcee +https://github.com/GilbertLabUCSF/CanDI +https://github.com/ropensci/fulltext +https://github.com/bradkav/DMRadon +https://github.com/HWang-Summit/HCGrid +https://github.com/PyDL/cat-puma +https://github.com/jbussemaker/SBArchOpt +https://github.com/big-data-lab-team/spot +https://github.com/ropensci/cleanEHR +https://github.com/OrlandoLam/SAMT +https://github.com/Gaiana/nirdust +https://github.com/cnsetzer/kilopop +https://github.com/nlesc-sherlock/Rig +https://github.com/valeriabonapersona/RePAIR +https://github.com/freebayes/freebayes +https://github.com/telegraphic/PyGSM +https://github.com/palumbom/GRASS +https://github.com/raufs/skDER +https://github.com/mwaskom/seaborn +https://github.com/nickjcroucher/gubbins +https://github.com/jianlin-cheng/DRCon +https://github.com/ropensci/PostcodesioR +https://github.com/citation-file-format/cff-converter-python +https://github.com/FofanovLab/mtsv_tools +https://github.com/ropensci/git2rdata +https://github.com/kbarbary/extinction +https://github.com/ECP-copa/Cabana +https://github.com/maxmahlke/ssos +https://github.com/ropensci/ezknitr +https://github.com/hongli-ma/RNANetMotif +https://github.com/LTLA/gesel.js +https://github.com/RiccardoBiondi/segmentation +https://github.com/brentp/peddy https://github.com/icredd-cheminfo/CGRdb2 +https://github.com/creanero/locus +https://github.com/rhenanbartels/hrv +https://github.com/cbrueffer/tophat-recondition +https://github.com/taehoryu/TDEmass +https://github.com/LucaMalavolta/PyORBIT +https://github.com/hcdenbakker/sepia +https://github.com/merenlab/anvio +https://github.com/ropensci/citesdb +https://github.com/yesint/EnCurv +https://github.com/ACCarnall/SpectRes +https://github.com/Ramialison-Lab-ARMI/3DCardiomics +https://github.com/jonathansick/MoAstro +https://github.com/rajeshmondal18/FoF-Halo-finder +https://github.com/ropensci/spatsoc +https://github.com/fstrozzi/Fastool +https://github.com/johnh2o2/cuvarbase +https://github.com/adammoss/supernovae +https://github.com/rx-li/EasyCellType +https://github.com/semaphoreP/whereistheplanet +https://github.com/yuliadm/mixComp +https://github.com/mikaelLEROY/AxionNS_RayTracing +https://github.com/spacetx/starfish +https://github.com/johannes-titz/cofad +https://github.com/Someone789/galax2d +https://github.com/parkus/ffd +https://github.com/daissi/thesias +https://github.com/wtraylor/modular_megafauna_model +https://github.com/IBM/fold2seq +https://github.com/PetervanLunteren/EcoAssist +https://github.com/astro-informatics/massmappy +https://github.com/carronj/lenspyx +https://github.com/jradavenport/appaloosa +https://github.com/UFParLab/aces4 +https://github.com/DEIB-GECO/BC_Intrinsic_subtyping +https://github.com/plazar/TOASTER +https://github.com/pnsaevik/effluent +https://github.com/alan-turing-institute/MLJ.jl +https://github.com/ropensci/graphql +https://github.com/tldr-group/taufactor +https://github.com/ERA-URBAN/wrfpy +https://github.com/ntoles/tristan-mp-pitp +https://github.com/etempel/Bisous +https://github.com/dh4gan/grapus +https://github.com/JulianBMunoz/RelicFast +https://github.com/napakalas/casbert +https://github.com/gijut/gnucash +https://github.com/anmolter/XLUR +https://github.com/devries/analytic_infall +https://github.com/tseemann/samclip +https://github.com/Narayana-Rao/PolSAR-tools +https://github.com/natashabatalha/PandExo +https://github.com/BasilioRuiz/SIR-code +https://github.com/abonaldi/TRECS +https://github.com/cweniger/swordfish +https://github.com/dfm/exopop +https://github.com/mrc-ide/drjacoby +https://github.com/user29A/fastrometry +https://github.com/davtsang/slimplectic +https://github.com/calboo/Wigglewave +https://github.com/ethicsai/ethical-smart-grid +https://github.com/austinpeel/herculens +https://github.com/arviz-devs/preliz +https://github.com/AlexMikes/AutoFunc +https://github.com/EliabCanul/nauyaca +https://github.com/prashjet/popkinmocks +https://github.com/low-sky/cprops +https://github.com/optimusmoose/jsms +https://github.com/SebOliver/PCA +https://github.com/CEED/libCEED +https://github.com/TRIQS/solid_dmft +https://github.com/LBNL-ETA/MSWH +https://github.com/umbramortem/nProFit +https://github.com/pscicluna/precision +https://github.com/frescigno/magpy_rv +https://github.com/ropensci/ckanr +https://github.com/ropensci/landscapetools +https://github.com/NLeSC/ExtJS-DateTime +https://github.com/mwalmsley/zoobot +https://github.com/SihanJiao/J-comb +https://github.com/ArkajyotiSaha/RandomForestsGLS +https://github.com/damonge/CRIME +https://github.com/Ambuj-UF/APOP +https://github.com/JiangYuTS/FacetClumps +https://github.com/alex-b-davis/gubas +https://github.com/TommasoRonconi/scampy +https://github.com/AP6YC/AdaptiveResonance.jl +https://github.com/bokunoBike/m6AGE +https://github.com/JohannesBuchner/UltraNest +https://github.com/chainsawriot/oolong +https://github.com/candYgene/siga +https://github.com/basp-group/Puri-Psi +https://github.com/aqtech-ca/mctreesearch4j +https://github.com/danhey/echelle +https://github.com/DReichLab/EIG +https://github.com/mc-imperial/jfs +https://github.com/rauschenberger/transreg +https://github.com/phelelani/nf-rnaSeqCount +https://github.com/richford/groupyr +https://github.com/shihyuntang/igrins_rv +https://github.com/xenon-middleware/xenon-grpc +https://github.com/rauschenberger/joinet +https://github.com/yangao07/TideHunter +https://github.com/flu-crew/smot +https://github.com/phac-nml/mob-suite +https://github.com/BradhamLab/icat +https://github.com/PacificBiosciences/IsoSeq +https://github.com/ryansmcgee/seirsplus +https://github.com/jobovy/stream-stream +https://github.com/eucp-project/storyboards +https://github.com/EcoJulia/Microbiome.jl +https://github.com/blind-contours/SuperNOVA +https://github.com/webbjj/m2mcluster +https://github.com/thomas0809/MolScribe +https://github.com/ANNACRNN/REBOUND_fragmentation +https://github.com/jendelel/PrankWebApp +https://github.com/andresmegias/radex-python +https://github.com/ropensci/phonfieldwork +https://github.com/snad-space/coniferest +https://github.com/PDB-REDO/density-fitness +https://github.com/ropensci/medrxivr +https://github.com/MIAnalyzer/MIA +https://github.com/reggiebernardo/PTAfast +https://github.com/ropensci/tidypmc +https://github.com/cheginit/HyRiver +https://github.com/alexriss/SpmImageTycoon.jl +https://github.com/moranegg/AffectationRO +https://github.com/ropensci/rnoaa +https://github.com/xuanxu/starmatrix +https://github.com/ropensci/mapr +https://github.com/benstahl92/deepSIP +https://github.com/JustinYKC/FEPOPS +https://github.com/SESMG/SESMG +https://github.com/lbcb-sci/graphmap2 +https://github.com/DEIB-GECO/CombSAFE +https://github.com/jdber1/opendrop +https://github.com/ropensci/rcitoid +https://github.com/mgckind/easyaccess +https://github.com/valboz/VBBinaryLensing +https://github.com/vcflib/tabixpp +https://github.com/CliMA/EnsembleKalmanProcesses.jl +https://github.com/sibirrer/psfr +https://github.com/Higgins00/TESS-Localize +https://github.com/ropensci/rdefra +https://github.com/wtsi-hpag/HiLine +https://github.com/hyosubkim/bayes-toolbox +https://github.com/UgoLomoio/gtex_visualizer +https://github.com/nanoporetech/pinfish +https://github.com/ropensci/rgpdd +https://github.com/zpenoyre/CausticFrog +https://github.com/loosolab/TOBIAS +https://github.com/editeodoro/Bbarolo +https://github.com/wfondrie/mokapot +https://github.com/paulhjkelly/taskgraph-metaprogramming +https://github.com/cdanielmachado/reframed +https://github.com/mmollina/viewpoly +https://github.com/secimTools/SECIMTools +https://github.com/pmelchior/skylens +https://github.com/ropensci/gtfsr +https://github.com/hz1010/FIPRESCI_data_analysis +https://github.com/MillionConcepts/lhorizon +https://github.com/rikenbit/dcTensor +https://github.com/NLeSC/esibayes +https://github.com/CosmoStatGW/MGCosmoPop +https://github.com/jbuisine/macop +https://github.com/PaulKuin/uvotpy +https://github.com/ExObsSim/ExoRad2-public +https://github.com/Starlink/starjava +https://github.com/ropensci/pangaear +https://github.com/DidierMurilloF/FielDHub +https://github.com/ramadatta/CPgeneProfiler +https://github.com/JuliaArrays/BlockArrays.jl +https://github.com/Natsiopoulos/ARDL +https://github.com/tseemann/barrnap +https://github.com/nlesc-nano/flamingo +https://github.com/C3BI-pasteur-fr/toppred +https://github.com/plumed/plumed2 +https://github.com/dunhamlab/PacRAT +https://github.com/cylammarco/ASPIRED +https://github.com/matthiaslee/Xmatch +https://github.com/cumbof/honto +https://github.com/ci-for-research/self-hosted-runners +https://github.com/ylab-hi/ScanExitronLR +https://github.com/EISy-as-Py/hardy +https://github.com/Heldenkombinat/Logodetect +https://github.com/Nextomics/nextsv +https://github.com/seqan/flexbar +https://github.com/rajewsky-lab/spacemake +https://github.com/rust-bio/rust-bio-tools +https://github.com/mlr-org/mcboost +https://github.com/changhoonhahn/pySpectrum +https://github.com/libgamera/GAMERA +https://github.com/exosports/MARGE +https://github.com/octopus-sensing/octopus-sensing +https://github.com/najoshi/sickle +https://github.com/stevenweaver/seqcomplexity +https://github.com/husseinaluie/FlowSieve +https://github.com/TianlaiProject/tlpipe +https://github.com/Via-Appia/via-appia-online-viewer +https://github.com/online-behaviour/machine-learning +https://github.com/BritishGeologicalSurvey/pyvolcans +https://github.com/indralab/pybiopax +https://github.com/bioinfo-ut/GenomeTester4 +https://github.com/YesselmanLab/rna_map +https://github.com/pymatting/pymatting +https://github.com/neurogenomics/MAGMA_Celltyping +https://github.com/NNSSA/GALLUMI_public +https://github.com/D-Crake/HEADSS +https://github.com/tomlouden/SPIDERMAN +https://github.com/ropensci/rdryad +https://github.com/HinLeung622/pipes_vis +https://github.com/msolpera/pyUPMASK +https://github.com/bempp/bempp-cl +https://github.com/ropensci/rzmq +https://github.com/rezeebe/orbitN +https://github.com/PDB-REDO/tortoize +https://github.com/ropensci/taxa +https://github.com/marcelm/dnaio +https://github.com/RuthAngus/stardate +https://github.com/t-brandt/acorns-adi +https://github.com/pybamm-team/PyBaMM +https://github.com/max0x7ba/atomic_queue https://github.com/arviz-devs/arviz -https://github.com/IMS-MAXIMS/openMAXIMS -https://github.com/OpenMD/OpenMD -https://github.com/bradkav/DMRadon -https://github.com/blankhaar/PORTAL -https://github.com/sib-swiss/glittr +https://github.com/COVID-IWG/epimargin +https://github.com/ropensci-review-tools/srr +https://github.com/jharno/cubep3m +https://github.com/genner-lab/meta-fish-lib +https://github.com/amkram/shusher +https://github.com/afeinstein20/eleanor +https://github.com/james-m-osborn/astrosat +https://github.com/Merck/pkglite +https://github.com/ropensci/ijtiff +https://github.com/basp-group/sopt +https://github.com/Peppags/CNN-SVR +https://github.com/OwenWard/ppdiag +https://github.com/nlesc-nano/CAT +https://github.com/damonge/CUTE +https://github.com/toddy15/medicalterms +https://github.com/cmzmasek/forester +https://github.com/HajimeKawahara/exojax +https://github.com/jpcoles/glass +https://github.com/dlakaplan/pulsarsurveyscraper +https://github.com/AA-ALERT/AMBER +https://github.com/phipsonlab/propeller-paper-analysis +https://github.com/BMILAB/scLINE +https://github.com/devitocodes/devito +https://github.com/RosettaCommons/RoseTTAFold +https://github.com/vcflib/bio-vcf +https://github.com/BrianAronson/birankr +https://github.com/3D-e-Chem/knime-python-node-archetype +https://github.com/LCOGT/banzai-nres +https://github.com/christopherlovell/sengi +https://github.com/delphes/delphes +https://github.com/ruta-k/uGMRT-pipeline +https://github.com/ropensci/cld2 +https://github.com/sfeeney/ddspectra +https://github.com/rzellem/EXOTIC +https://github.com/HorvathLab/ReQTL +https://github.com/VNNikolaidis/nnlib2Rcpp +https://github.com/oschwengers/platon +https://github.com/gmbrandt/xwavecal +https://github.com/ndaniel/fusioncatcher +https://github.com/prdm0/ropenblas +https://github.com/dvallesp/ASOHF +https://github.com/v-morello/riptide +https://github.com/ropensci/ecoengine +https://github.com/Valcin/BE_HaPPy +https://github.com/wdecoster/nanofilt +https://github.com/rvaser/bioparser +https://github.com/ropensci/unifir +https://github.com/moead-framework/framework +https://github.com/CederGroupHub/sparse-lm +https://github.com/BioMeCIS-Lab/OpenOmics +https://github.com/VMBoehm/MADLens +https://github.com/davidsoergel/rtax +https://github.com/soraxas/sbp-env https://github.com/dsoave/JLS -https://github.com/UAMCAntwerpen/LEADD -https://github.com/rnikutta/rhocube -https://github.com/OttoStruve/muler -https://github.com/liulizhi1996/HPODNets -https://github.com/DeepRegNet/DeepReg -https://github.com/AA-ALERT/frbcat-web -https://github.com/davidaknowles/leafcutter -https://github.com/MesserLab/SLiM -https://github.com/e-merlin/eMERLIN_CASA_pipeline -https://github.com/ropensci/helminthR -https://github.com/nh13/DWGSIM -https://github.com/PacificBiosciences/kineticsTools -https://github.com/gasparl/possa -https://github.com/ccsb-scripps/Illustrate -https://github.com/ropensci/tarchetypes -https://github.com/klb2/qmkpy -https://github.com/reedacartwright/ngila -https://github.com/andersdot/photoParallax -https://github.com/galaxyproject/ansible-tiaas2 -https://github.com/DEIB-GECO/GeneNetFusion -https://github.com/ropensci/refsplitr -https://github.com/yangao07/TideHunter -https://github.com/sanjibs/bmcmc -https://github.com/TheJacksonLaboratory/drug-synergy -https://github.com/jdeast/EXOFASTv2 -https://github.com/ropensci-org/pkgreviewr -https://github.com/openscm/openscm-twolayermodel -https://github.com/Valires/er-evaluation -https://github.com/ChenfuShi/HiChIP_peaks -https://github.com/JohannesBuchner/nway -https://github.com/jmhuie/Slicer-SegmentGeometry -https://github.com/jfarek/alignstats -https://github.com/sbailey/empca -https://github.com/eWaterCycle/setup-singularity -https://github.com/pni-lab/mlconfound -https://github.com/jadexter/grtrans -https://github.com/brian-team/brian2 -https://github.com/bihealth/sodar_core -https://github.com/PopMedNet-Team/popmednet -https://github.com/ropensci/rrricanesdata -https://github.com/wilsonrljr/sysidentpy -https://github.com/olivares-j/Kalkayotl -https://github.com/medvedevgroup/TwoPaCo -https://github.com/RadioAstronomySoftwareGroup/pyuvdata -https://github.com/vcflib/tabixpp -https://github.com/tripathi/Atmospheric-Athena -https://github.com/RavenGan/GR2D2 -https://github.com/EOSC-LOFAR/lofar-ld -https://github.com/pjedge/longshot -https://github.com/zheng-lh/UBER -https://github.com/compomics/COSS -https://github.com/ABM4ALL/Melodie -https://github.com/SAIL-Labs/AMICAL -https://github.com/JolleJolles/pirecorder -https://github.com/1054/Crab.Toolkit.michi2 -https://github.com/domenico-simone/rmlst_api -https://github.com/hamers/secularmultiple -https://github.com/ropensci-review-tools/autotest -https://github.com/SJLeo/FFSD -https://github.com/migueldvb/cine -https://github.com/HUST-DataMan/FRMC -https://github.com/loosolab/TOBIAS -https://github.com/ESMValGroup/ESMValTool -https://github.com/BackofenLab/Peakhood -https://github.com/ropensci/hydroscoper -https://github.com/dfujim/bfit -https://github.com/eelregit/covdisc -https://github.com/wangsiwei2010/FPMVS-CAG -https://github.com/quatrope/ProperImage -https://github.com/odelaneau/shapeit5 -https://github.com/pipliggins/EVolve -https://github.com/uedaLabR/nanoDoc -https://github.com/valerio-marra/CalPriorSNIa -https://github.com/NASA-PDS/naif-pds4-bundler -https://github.com/RozanskiT/suppnet -https://github.com/rinikerlab/Ensembler -https://github.com/hrwakeford/ExoTiC-ISM +https://github.com/ropensci/dittodb +https://github.com/ropensci/osmdata +https://github.com/cwieder/py-ssPA +https://github.com/NLeSC/eEcology-Classification +https://github.com/ryanvarley/ExoData +https://github.com/ahoward-cf/ppmap +https://github.com/DebduttaPaul/luminosity_function_of_lGRBs +https://github.com/GRTLCollaboration/GRChombo +https://github.com/tseemann/VelvetOptimiser +https://github.com/aewallin/allantools +https://github.com/casaluca/bolometric-corrections +https://github.com/pec27/smerfs +https://github.com/czbiohub/cerebra +https://github.com/PacificBiosciences/bam2fastx +https://github.com/ranieremenezes/easyFermi +https://github.com/ictr/covid19-outbreak-simulator +https://github.com/schochastics/signnet +https://github.com/CRPropa/CRPropa2 +https://github.com/BjoernBiltzinger/pyspi +https://github.com/samconnolly/DELightcurveSimulation +https://github.com/refresh-bio/Whisper +https://github.com/ropensci/FedData +https://github.com/ImperialCollegeLondon/epidemia https://github.com/biobakery/halla -https://github.com/nlesc-nano/Moka -https://github.com/c-zhou/yahs -https://github.com/moranegg/AffectationRO -https://github.com/yupidevs/pactus -https://github.com/Hegghammer/daiR -https://github.com/amusecode/amuse -https://github.com/rasg-affiliates/healvis -https://github.com/nitadori/SCF-FDPS -https://github.com/astro-friedel/CADRE -https://github.com/compomics/DeepLC -https://github.com/rhayes777/PyAutoFit -https://github.com/hotokezaka/HeatingRate -https://github.com/OpenWaterAnalytics/pyswmm -https://github.com/taranu/AllStarFit -https://github.com/dondi/GRNsight -https://github.com/ideasrule/platon -https://github.com/cosimameyer/overviewR -https://github.com/rsnemmen/BCES -https://github.com/GregoryFaust/yaha -https://github.com/stammler/dustpylib -https://github.com/dutilh/CAT -https://github.com/dtamayo/reboundx -https://github.com/rfeldmann/leopy -https://github.com/jkimlab/msPIPE -https://github.com/auckland-cosmo/interp-mc -https://github.com/ropensci/hunspell -https://github.com/hpparvi/PyTransit -https://github.com/erikbern/ann-benchmarks -https://github.com/conda/pycosat -https://github.com/franpoz/SHERLOCK -https://github.com/ropensci/emld -https://github.com/oorb/oorb -https://github.com/dgarrimar/sqtlseeker2-nf -https://github.com/equib/pyEQUIB -https://github.com/LSSTDESC/chroma -https://github.com/dmilakovic/QSOSIM10 -https://github.com/GooglingTheCancerGenome/sv-callers -https://github.com/bcgsc/abyss -https://github.com/ropensci/tic -https://github.com/idrugLab/hignn -https://github.com/abschneider/StrainHub -https://github.com/PCMSolver/pcmsolver -https://github.com/jpcoles/glass -https://github.com/anchal-009/SAVED21cm -https://github.com/sncosmo/sncosmo -https://github.com/UCD4IDS/WaveletsExt.jl -https://github.com/Planet-AI-GmbH/tfaip -https://github.com/taehoryu/TDEmass -https://github.com/adammoss/supernovae -https://github.com/bootphon/phonemizer -https://github.com/walaj/svaba -https://github.com/BioGearsEngine/core -https://github.com/davidkipping/ECCSAMPLES -https://github.com/hippke/communication -https://github.com/kdm9/axe -https://github.com/PaulKuin/uvotpy -https://github.com/DrMarc/slab -https://github.com/diCenzo-GC/Tn-Core-webserver +https://github.com/tkerscher/blast +https://github.com/BoPeng/simuPOP +https://github.com/ArtRand/signalAlign +https://github.com/matthiasdemuzere/w2w +https://github.com/ropensci/codemetar +https://github.com/ropensci/googleLanguageR +https://github.com/wmalab/EnHiC +https://github.com/ImperialCollegeLondon/research-software-directory +https://github.com/CMU-SAFARI/BLEND +https://github.com/biomedia-mira/deepscm +https://github.com/aprsa/dips +https://github.com/mattyowl/fitScalingRelation +https://github.com/ropensci/RefManageR +https://github.com/Illumina/SpliceAI +https://github.com/bpairet/mayo_hci +https://github.com/Sarc-Graph/sarcgraph +https://github.com/mjuric/galfast +https://github.com/jstuecker/adiabatic-tides +https://github.com/iomega/paired-data-form +https://github.com/CosmoStat/Glimpse +https://github.com/ulebreui/shark +https://github.com/BIC-MNI/libminc +https://github.com/mtakahiro/gsf +https://github.com/Yomguithereal/talisman +https://github.com/MesquiteProject/MesquiteCore +https://github.com/gramos/imagetooth +https://github.com/sPaMFouR/RedPipe +https://github.com/ParkvilleData/MetaGenePipe +https://github.com/MOSAICS-NIH/MOSAICS +https://github.com/IKNL/vantage6 +https://github.com/facebookresearch/faiss +https://github.com/TriPed-Robot/trip_kinematics +https://github.com/galizia-lab/pyview +https://github.com/gnave/pybranch +https://github.com/biocircuits/bioscrape +https://github.com/NLeSC/EEG-epilepsy-diagnosis +https://github.com/brainets/frites +https://github.com/ycwu1030/EvoEMD +https://github.com/zkdtc/MLC_ELGs +https://github.com/PGB-LIV/MHCVision +https://github.com/conchoecia/pauvre +https://github.com/CRPropa/CRPropa3 +https://github.com/ERA-URBAN/fm128_radar +https://github.com/zoometh/iconr +https://github.com/osallou/cassiopee-c +https://github.com/rrwick/Filtlong +https://github.com/ropensci/jsonvalidate +https://github.com/SNOwGLoBES/snowglobes +https://github.com/sfarrens/sf_deconvolve +https://github.com/biocore-ntnu/epic2 +https://github.com/ImperialCollegeLondon/champ +https://github.com/tseemann/shovill +https://github.com/abs2k12/COCOA +https://github.com/RECETOX/RIAssigner +https://github.com/research-software-directory/research-software-directory +https://github.com/ORNL/curifactory +https://github.com/sanger-pathogens/assembly-stats +https://github.com/ropensci/refimpact +https://github.com/fairdataihub/SPARClink +https://github.com/CosmoStat/CosmoPMC +https://github.com/Kaixhin/FGLab +https://github.com/Beuth-Erdelt/DBMS-Benchmarker +https://github.com/ropensci/cyphr +https://github.com/matsen/pplacer +https://github.com/ropensci/smapr +https://github.com/SchmollerLab/Cell_ACDC +https://github.com/nathanchara/l1periodogram +https://github.com/grburgess/ronswanson +https://github.com/ropensci/DataSpaceR +https://github.com/FredHutch/SEACR +https://github.com/FINNGEN/lavaa-react +https://github.com/PeterKamphuis/FAT +https://github.com/Samreay/Barry +https://github.com/dpseidel/stmove +https://github.com/OSS-Lab/ChemChaste +https://github.com/eWaterCycle/setup-singularity +https://github.com/SwiftVISA/SwiftVISASwift +https://github.com/Yu-Group/veridical-flow +https://github.com/mishioo/tesliper +https://github.com/parklab/LiRA +https://github.com/maickrau/MBG +https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library https://github.com/htjb/maxsmooth -https://github.com/sidmohite/nimbus-astro -https://github.com/siara-cc/Unishox2 -https://github.com/yungkipreos/Min-CaLM -https://github.com/fjankowsk/scatfit -https://github.com/Smith42/pix2prof -https://github.com/flexible-atomic-code/fac -https://github.com/TNOCS/csWeb -https://github.com/ropensci/predictNMB -https://github.com/cpinte/casa_cube -https://github.com/ropensci/rnassqs -https://github.com/poldracklab/nitransforms -https://github.com/psi4/psi4 -https://github.com/radiocosmology/caput +https://github.com/Ruiz-HCI-Lab/ggMOB +https://github.com/szhorvat/IGraphM +https://github.com/pcubillos/pyratbay +https://github.com/skiehl/lcsim +https://github.com/ImperialCollegeLondon/rcs-pacemakers +https://github.com/wajidarshad/ESIDE +https://github.com/patscott/pippi +https://github.com/ropensci/internetarchive +https://github.com/JuliaArrays/LazyArrays.jl +https://github.com/ORNL/tx2 +https://github.com/ColemanRHarris/mxnorm +https://github.com/NLeSC/hadrianus-scripts +https://github.com/eblur/dust +https://github.com/ropensci/qpdf +https://github.com/esquivas/guacho +https://github.com/ropensci/Rclean +https://github.com/elixir-luxembourg/daisy +https://github.com/DLR-RM/BlenderProc https://github.com/starkit/wsynphot -https://github.com/xiaofengsong/pHisPred -https://github.com/veragluscevic/dmdd -https://github.com/ProfessorBrunner/rc3-pipeline -https://github.com/bancaditalia/black-it -https://github.com/tpapp/MCMCDiagnostics.jl -https://github.com/secastel/phaser -https://github.com/jeffcsauer/arcos_arcospy_information -https://github.com/spectrapepper/spectrapepper -https://github.com/tomasstolker/ARTES -https://github.com/sunpy/ndcube -https://github.com/ropensci/antiword -https://github.com/YenWenWang/HapDipKinship -https://github.com/NLESC-JCER/QMCblip -https://github.com/pudu-py/pudu -https://github.com/bjmorgan/py-sc-fermi -https://github.com/ropensci/riem -https://github.com/GreiffLab/immuneREF -https://github.com/ropensci/gtfsr -https://github.com/xenon-middleware/xenon-flow -https://github.com/rvaser/sword -https://github.com/jan-rybizki/Chempy -https://github.com/ABard0/MDGF-MCEC -https://github.com/Caltech-IPAC/Montage -https://github.com/musevlt/muse-psfr -https://github.com/FergusDonnan/PyROA -https://github.com/csabiu/kstat -https://github.com/zhoux85/scAdapt -https://github.com/ejhigson/nestcheck -https://github.com/telatin/seqfu2 -https://github.com/AntonelliLab/seqcap_processor -https://github.com/ropensci/nlrx -https://github.com/vibbits/phyd3 -https://github.com/barklem/abo-cross -https://github.com/dzerbino/velvet -https://github.com/tanhevg/GpABC.jl -https://github.com/miguelcarcamov/gpuvmem -https://github.com/nasa/prog_models +https://github.com/HCGB-IGTP/spaTyper +https://github.com/ropensci/geojsonio +https://github.com/SeamusClarke/BTS +https://github.com/zhangjunpeng411/SCOM +https://github.com/miguelzuma/hi_class_public +https://github.com/NBISweden/AGAT +https://github.com/sklasfeld/DANPOS3 +https://github.com/fkiwy/AstroToolBox +https://github.com/rfeldmann/leopy +https://github.com/FCS-analysis/multipletau +https://github.com/alphaparrot/ExoPlaSim +https://github.com/pkgw/pwkit +https://github.com/CDSP-SCPO/dataverse-feed +https://github.com/yungkipreos/Min-CaLM +https://github.com/juliotux/astropop https://github.com/puregome/notebooks -https://github.com/nf-core/viralrecon -https://github.com/ariedel/lacewing -https://github.com/IftachSadeh/ANNZ -https://github.com/ITA-Solar/rh -https://github.com/etal/cnvkit -https://github.com/easystats/performance -https://github.com/atmos-cloud-sim-uj/PySDM -https://github.com/ronnyerrmann/HiFLEx -https://github.com/barnabytprowe/imcom -https://github.com/PNNL-m-q/mza -https://github.com/exoclime/VULCAN -https://github.com/ANTsX/ANTs -https://github.com/longfei8533/SDC +https://github.com/conda/conda +https://github.com/lmfit/lmfit-py +https://github.com/astropy/SPISEA +https://github.com/N-BodyShop/smooth +https://github.com/IndrajeetPatil/statsExpressions +https://github.com/mrc-ide/dde +https://github.com/jbattat/pep_core +https://github.com/tum-esm/pyra +https://github.com/vwesselkamp/ernie-extension +https://github.com/prioritizr/wdpar +https://github.com/JianjunTan-Beijing/LPI-CSFFR +https://github.com/hfarias/mask_galaxy +https://github.com/JLBLine/PUMA +https://github.com/wathela/FIRST-CLASSIFIER +https://github.com/MariaTsantaki/FASMA-synthesis +https://github.com/junkoda/sidm-nbody +https://github.com/SamDuffield/bmm +https://github.com/jianghuaijie/scLRTC +https://github.com/devsim/devsim +https://github.com/phac-nml/biohansel +https://github.com/keatonb/Pyriod +https://github.com/ropensci/spocc +https://github.com/gerddie/maxflow +https://github.com/tessgi/tvguide +https://github.com/cwinpy/cwinpy +https://github.com/mjshao06/pdifFinder +https://github.com/ropensci/opencv +https://github.com/lanzen/ampliconnoise +https://github.com/mzechmeister/serval +https://github.com/fabiopardo/tonic +https://github.com/mostanes/umbrella2 +https://github.com/samtools/bcftools +https://github.com/ELELAB/cancermuts +https://github.com/SCM-NV/qmflows +https://github.com/ICRAR/libprofit +https://github.com/AA-ALERT/AstroData https://github.com/vimc/vaultr -https://github.com/mpokorny/vysmaw -https://github.com/gwastro/pycbc -https://github.com/mdsteiner/EFAtools -https://github.com/Zafiirah13/meercrab -https://github.com/Degiacomi-Lab/molearn -https://github.com/duffell/Disco -https://github.com/wdecoster/nanopack -https://github.com/megbedell/wobble -https://github.com/wdecoster/NanoPlot -https://github.com/julie-forman-kay-lab/SPyCi-PDB -https://github.com/stevertaylor/gw_pta_emulator -https://github.com/jkrogager/VoigtFit -https://github.com/CliMA/Oceananigans.jl -https://github.com/NLeSC/eEcology-Classification -https://github.com/PrincetonUniversity/Athena-Cversion -https://github.com/ppsp-team/PyNM -https://github.com/radiocosmology/driftscan -https://github.com/ropensci/mcbette -https://github.com/gear-genomics/tracy -https://github.com/PacificBiosciences/IsoSeq -https://github.com/bbfrederick/stabilitycalc -https://github.com/eWaterCycle/jupyterlab_thredds -https://github.com/jczarnowski/DeepFactors -https://github.com/demorest/nanopipe -https://github.com/cadop/seg1d -https://github.com/SciOmicsLab/PhenoComb -https://github.com/spiketools/spiketools -https://github.com/shinichiroando/sashimi-c -https://github.com/hippke/wotan -https://github.com/healytwin1/HISS -https://github.com/haowenz/chromap -https://github.com/SegataLab/lefse -https://github.com/mlarichardson/CosmosCanvas -https://github.com/djones1040/PythonPhot -https://github.com/Illumina/manta -https://github.com/QuantumPlasma/SFQEDtoolkit -https://github.com/telatin/covtobed -https://github.com/EISy-as-Py/hardy -https://github.com/flu-crew/smot -https://github.com/SYalouz/QuantNBody -https://github.com/leotac/joypy -https://github.com/genouest/biomaj-daemon -https://github.com/OpenMDAO/dymos -https://github.com/netrias/rnassist -https://github.com/savage13/sacio -https://github.com/pybamm-team/PyBaMM -https://github.com/3D-e-Chem/knime-silicos-it -https://github.com/simonsobs/mnms -https://github.com/tobiasrausch/wally -https://github.com/arvados/arvados -https://github.com/NLeSC/cptm -https://github.com/ZhaiLab-SUSTech/FLEPSeq -https://github.com/jdber1/opendrop -https://github.com/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report -https://github.com/miguelzuma/hi_class_public -https://github.com/mrirecon/view -https://github.com/mwvgroup/pwv_kpno -https://github.com/JuliaQX/QXTools.jl -https://github.com/ropensci/rsat -https://github.com/Gabaldonlab/perSVade -https://github.com/ClusterMonteCarlo/CMC-COSMIC -https://github.com/erf-model/ERF -https://github.com/epiforecasts/covidregionaldata -https://github.com/brsynth/rp2paths -https://github.com/dh4gan/taktent -https://github.com/dunhamlab/PacRAT -https://github.com/saphir746/BiobankRead-Bash -https://github.com/ropensci/citesdb -https://github.com/JannisHoch/copro -https://github.com/ORNL/tx2 -https://github.com/nasa/simupy-flight -https://github.com/ropensci/rppo -https://github.com/lasseignelab/CINmetrics -https://github.com/ropensci/spelling +https://github.com/Kaixhin/FGMachine +https://github.com/UoMMIB/TFBMiner +https://github.com/gourabghoshroy/MPVNN +https://github.com/fcastagna/preprofit +https://github.com/exosports/transit +https://github.com/tmcclintock/cluster_toolkit +https://github.com/3D-e-Chem/knime-klifs +https://github.com/robertwissing/EOS +https://github.com/temken/DarkARC +https://github.com/federicomarulli/CosmoBolognaLib +https://github.com/MASILab/pyPheWAS +https://github.com/vijayvarma392/binaryBHexp +https://github.com/desihub/desitarget +https://github.com/ropensci/tracerer +https://github.com/farhanferoz/SkyNet +https://github.com/NLeSC/spot +https://github.com/tobias-dv-lnu/s4rdm3x +https://github.com/max-little/GRAPL +https://github.com/beagle-dev/beagle-lib +https://github.com/CTU-Bern/presize +https://github.com/NeamulKabir/EnsembleFam +https://github.com/Effective-Quadratures/Effective-Quadratures +https://github.com/nespinoza/exonailer +https://github.com/chervias/DustFilaments +https://github.com/RECETOX/recetox-msfinder +https://github.com/faasm/faasm +https://github.com/quatrope/feets +https://github.com/RECETOX/MSMetaEnhancer +https://github.com/ymocquar/HOODESolver.jl +https://github.com/r-lib/gert +https://github.com/leirufeng/iEnhancer-DCSV +https://github.com/zgazak/TAP +https://github.com/timothydmorton/VESPA +https://github.com/ahcm/ffindex +https://github.com/MoreiraLAB/mensadb-open +https://github.com/IMS-MAXIMS/openMAXIMS +https://github.com/mkelley/zchecker +https://github.com/AdrianA-T/cytomorph +https://github.com/ixkael/3DEX +https://github.com/michaelhb/superplot +https://github.com/TRASAL/AMBER +https://github.com/ni1o1/transbigdata +https://github.com/barnabytprowe/imcom +https://github.com/jonaselgammal/GPry +https://github.com/chanzuckerberg/czid-dag +https://github.com/tvwenger/kd +https://github.com/ropensci/rnassqs +https://github.com/phelelani/nf-rnaSeqMetagen +https://github.com/ropensci/av +https://github.com/ropensci/beautier +https://github.com/ANTsX/ANTs +https://github.com/YenWenWang/HapDipKinship +https://github.com/rickhelmus/patRoon +https://github.com/3D-e-Chem/knime-plants +https://github.com/WMD-group/MacroDensity +https://github.com/AFD-Illinois/ebhlight +https://github.com/jakelever/civicmine +https://github.com/mattpitkin/psrqpy +https://github.com/danielemichilli/SpS +https://github.com/e-mental-health/data-processing +https://github.com/bcgsc/tigmint +https://github.com/HAWinther/FML +https://github.com/ToyotaCRDL/mahos +https://github.com/johncwok/CategoricalTimeSeries.jl +https://github.com/dolfin-adjoint/pyadjoint +https://github.com/ronshnapp/MyPTV +https://github.com/3D-e-Chem/3D-e-Chem-VM +https://github.com/damocles-code/damocles +https://github.com/skovaka/UNCALLED +https://github.com/databio/GenomicDistributions +https://github.com/annehutter/astraeus +https://github.com/wokast/PyCactus +https://github.com/engyasin/Offline_MOT +https://github.com/Punzo/SlicerAstro +https://github.com/pangenome/smoothxg +https://github.com/rambaut/jebl2 +https://github.com/ropensci/outsider.base +https://github.com/tronsgaard/barycorr +https://github.com/facom/tidev +https://github.com/ropensci/osmplotr +https://github.com/moscibrodzka/ipole +https://github.com/signaturescience/skater +https://github.com/leonzheng2/butterfly +https://github.com/nasa/kepler-robovetter +https://github.com/rikenbit/iTensor +https://github.com/McMahonCosmologyGroup/holosim-ml +https://github.com/tzhu-bio/UMI-ATAC-seq +https://github.com/pmelchior/scarlet +https://github.com/brentp/cyvcf2 +https://github.com/grant-m-s/AstronomicAL +https://github.com/CatarinaMMarques/FisherCosmology +https://github.com/dartoon/galight +https://github.com/stammler/dustpy +https://github.com/tpospisi/NNKCDE +https://github.com/jodyphelan/tb-ml +https://github.com/yangfangs/test_GFICLEE +https://github.com/mbejger/polgraw-allsky +https://github.com/institut-de-genomique/HAPO-G +https://github.com/YuSugihara/MutMap +https://github.com/wjakethompson/measr +https://github.com/oliverphilcox/Spectra-Without-Windows +https://github.com/Pithikos/C-Thread-Pool +https://github.com/ropensci/suppdata +https://github.com/danielkoll/tidally-locked-coordinates +https://github.com/sheydenreich/threepoint +https://github.com/CityU-AIM-Group/HTD +https://github.com/BU-ISCIII/iSkyLIMS +https://github.com/ejhigson/perfectns +https://github.com/bxia888/CEFCIG +https://github.com/narunlifescience/runcircos-gui +https://github.com/tikk3r/legacystamps +https://github.com/kehrlab/PopDel +https://github.com/pratheesh3780/grapesAgri1 +https://github.com/carronj/plancklens +https://github.com/ropensci/ramlegacy +https://github.com/CavendishAstrophysics/postmortem +https://github.com/SSAGESproject/SSAGES +https://github.com/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY +https://github.com/gymreklab/GangSTR +https://github.com/eXtremeGravityInstitute/LISA-Massive-Black-Hole +https://github.com/aconley/mbb_emcee +https://github.com/GreenBankObservatory/gbtgridder +https://github.com/mischaschirmer/nebular +https://github.com/ratt-ru/eidos +https://github.com/EACcodes/TigerCI +https://github.com/sstadick/perbase +https://github.com/HuttleyLab/scitrack +https://github.com/minaskar/hankl https://github.com/MelanieKahl/MechAnalyze -https://github.com/calebclass/Shiny-NanoTube -https://github.com/CRPropa/CRPropa2 -https://github.com/ropensci/DataSpaceR -https://github.com/jtksai/PyCOOL -https://github.com/dynamics-of-stellar-systems/dynamite_release -https://github.com/mgcooper/baseflow -https://github.com/samtools/bcftools -https://github.com/csinva/imodels -https://github.com/SCECcode/pycsep -https://github.com/bd-j/prospector -https://github.com/henrycousins/gspa -https://github.com/jamesaird/FAST -https://github.com/liniguez/Insplico_simulations -https://github.com/NLeSC/PattyVis -https://github.com/dfm/photodynam -https://github.com/mdshw5/pyfaidx -https://github.com/lantunes/cellpylib -https://github.com/maxbernyk/lightcone -https://github.com/IKNL/vantage6 -https://github.com/fjdu/myRadex -https://github.com/haiyang1986/TVAR -https://github.com/wajidarshad/ESIDE -https://github.com/seawander/centerRadon -https://github.com/bempp/bempp-cl -https://github.com/mbillingr/libgdf -https://github.com/saeyslab/PeacoQC -https://github.com/FSEC-Photovoltaics/pvrpm-lcoe -https://github.com/xdf-modules/libxdf -https://github.com/NLeSC/embodied-emotions-scripts -https://github.com/bmorris3/aesop -https://github.com/infer-actively/pymdp -https://github.com/ropensci/jenkins -https://github.com/BioMedIA/MIRTK -https://github.com/Kaixhin/PlaNet -https://github.com/undark-lab/sstrax -https://github.com/ocxtal/minialign -https://github.com/bcgov/bcdata -https://github.com/luizfelippesr/galmag -https://github.com/EddyRivasLab/hmmer -https://github.com/cweniger/swordfish -https://github.com/V-Bernal/GeneNetTools -https://github.com/CMU-SAFARI/BLEND -https://github.com/BiocomputeLab/paraSBOLv -https://github.com/biolab/orange3 +https://github.com/ropensci/taxlist +https://github.com/smaret/astrochem 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-https://github.com/ECSHackWeek/impedance.py -https://github.com/datalad/datalad -https://github.com/delve-team/delve +https://github.com/N-Wouda/ALNS +https://github.com/InsightSoftwareConsortium/ITK +https://github.com/cython/cython https://github.com/vatlab/sos-notebook -https://github.com/SietzeN/glottospace +https://github.com/pysal/spaghetti +https://github.com/JuliaDynamics/DrWatson.jl +https://github.com/GeminiDRSoftware/DRAGONS +https://github.com/plotly/dash +https://github.com/skypyproject/skypy +https://github.com/statdivlab/rigr +https://github.com/mortonne/psifr +https://github.com/pytorch/vision +https://github.com/CLARIAH/grlc +https://github.com/hpc-social/map +https://github.com/thomaspinder/GPJax +https://github.com/cogent3/cogent3 +https://github.com/NicolasHug/Surprise +https://github.com/xgi-org/xgi +https://github.com/colour-science/colour +https://github.com/parmoo/parmoo +https://github.com/AMReX-Astro/Castro +https://github.com/snad-space/ztf-viewer +https://github.com/ConnorStoneAstro/AutoProf +https://github.com/lucydot/effmass +https://github.com/cholla-hydro/cholla +https://github.com/pymedphys/pymedphys +https://github.com/sblunt/orbitize +https://github.com/blackjax-devs/blackjax +https://github.com/ropensci/lightr +https://github.com/mirapy-org/mirapy +https://github.com/ropensci/tidyqpcr +https://github.com/traja-team/traja https://github.com/ynop/audiomate -https://github.com/matplotlib/matplotlib -https://github.com/snowformatics/macrobot -https://github.com/JPenuchot/ctbench -https://github.com/TrackerControl/tracker-control-android -https://github.com/ropenscilabs/gendercoder -https://github.com/DataverseLabs/pyinterpolate https://github.com/jbytecode/LinRegOutliers -https://github.com/einsteinpy/einsteinpy +https://github.com/williamjameshandley/anesthetic +https://github.com/JPenuchot/ctbench +https://github.com/syasini/AstroPaint +https://github.com/hpc-social/jobs +https://github.com/scverse/anndata +https://github.com/gridap/Gridap.jl +https://github.com/qutip/qutip +https://github.com/JuliaManifolds/Manopt.jl +https://github.com/tensorflow/tensorflow +https://github.com/roualdes/bridgestan +https://github.com/CAMI-challenge/CAMITAX +https://github.com/ropensci/BaseSet +https://github.com/scikit-learn/scikit-learn +https://github.com/sxs-collaboration/spectre +https://github.com/ElectionDataAnalysis/electiondata +https://github.com/su2code/SU2 +https://github.com/snowformatics/macrobot +https://github.com/Jammy2211/PyAutoLens +https://github.com/adbar/htmldate +https://github.com/mathLab/PINA +https://github.com/tardis-sn/carsus +https://github.com/spack/spack +https://github.com/open2c/cooler +https://github.com/aiidateam/aiida-core +https://github.com/palaimon/ipyannotator +https://github.com/NLeSC/litstudy +https://github.com/JuliaPlots/Makie.jl +https://github.com/ropensci/webchem https://github.com/mad-lab-fau/tpcp -https://github.com/biaslab/RxInfer.jl -https://github.com/sjvrijn/mf2 +https://github.com/BiomedSciAI/fuse-med-ml +https://github.com/precice/micro-manager +https://github.com/stan-dev/stan +https://github.com/networkx/networkx +https://github.com/hpc-social/events +https://github.com/pvlib/pvlib-python +https://github.com/xoopR/set6 https://github.com/glotzerlab/coxeter -https://github.com/DataBiosphere/toil -https://github.com/statdivlab/rigr -https://github.com/open2c/cooler -https://github.com/mzy2240/ESA -https://github.com/JuliaSmoothOptimizers/PDENLPModels.jl -https://github.com/sunpy/sunpy -https://github.com/sblunt/orbitize https://github.com/jobovy/galpy -https://github.com/JuliaDynamics/DrWatson.jl -https://github.com/tardis-sn/tardis -https://github.com/TeamCOMPAS/COMPAS -https://github.com/jupyterlab/jupyterlab -https://github.com/Martinsos/edlib -https://github.com/multiscale/muscle3 -https://github.com/pytorch/vision -https://github.com/undark-lab/swyft -https://github.com/palaimon/ipyannotator -https://github.com/pmeier/pystiche -https://github.com/williamjameshandley/anesthetic -https://github.com/SISPO-developers/sispo -https://github.com/ranocha/SummationByPartsOperators.jl -https://github.com/mortonne/psifr -https://github.com/llrs/experDesign -https://github.com/atomec-project/atoMEC -https://github.com/bluesky/bluesky -https://github.com/JuliaHEP/UnROOT.jl -https://github.com/jump-dev/JuMP.jl -https://github.com/hoechenberger/questplus -https://github.com/Qiskit/rustworkx -https://github.com/fAndreuzzi/BisPy -https://github.com/syasini/AstroPaint -https://github.com/AMReX-Astro/Castro -https://github.com/pysal/spaghetti -https://github.com/traja-team/traja -https://github.com/VirtualPlanetaryLaboratory/vplanet -https://github.com/nu-radio/NuRadioMC -https://github.com/DavidT3/XGA -https://github.com/reizio/reiz.io -https://github.com/firefly-cpp/NiaARM -https://github.com/nextstrain/auspice -https://github.com/CQCL/qujax -https://github.com/scverse/scanpy -https://github.com/lumen-org/lumen -https://github.com/MrMinimal64/multivar_horner -https://github.com/numba/numba -https://github.com/econ-ark/HARK -https://github.com/joglekara/VlaPy https://github.com/JulianKarlBauer/mechkit -https://github.com/simd-everywhere/simde -https://github.com/snek5000/snek5000 -https://github.com/JuliaLang/julia +https://github.com/catboost/catboost +https://github.com/riogroup/SORA +https://github.com/feature-engine/feature_engine +https://github.com/glotzerlab/hoomd-blue +https://github.com/jmejia8/Metaheuristics.jl +https://github.com/geopandas/geopandas https://github.com/jameschapman19/cca_zoo -https://github.com/SchlossLab/mikropml -https://github.com/ml-evs/matador -https://github.com/CIRADA-Tools/RM-Tools -https://github.com/ipython/ipython -https://github.com/precice/micro-manager -https://github.com/MESAHub/mesa -https://github.com/GeminiDRSoftware/DRAGONS \ No newline at end of file +https://github.com/SDXorg/pysd +https://github.com/nextstrain/nextclade +https://github.com/ECP-WarpX/WarpX \ No newline at end of file diff --git a/docs/_issues/2020-07-30-pandas-dev-pandas-35484.md b/docs/_issues/2020-07-30-pandas-dev-pandas-35484.md deleted file mode 100644 index bf295c57..00000000 --- a/docs/_issues/2020-07-30-pandas-dev-pandas-35484.md +++ /dev/null @@ -1,8 +0,0 @@ ---- -tags: ["IO-SQL","Needs-Tests","alignment","data-analysis","data-science","flexible","pandas","python"] -title: "BUG: read_sql no longer works simply with SqlAlchemy selectables and a quick fix" -html_url: "https://github.com/pandas-dev/pandas/issues/35484" -user: "machow" -repo: "pandas-dev/pandas" ---- - diff --git a/docs/_issues/2021-12-09-matplotlib-matplotlib-21898.md b/docs/_issues/2021-12-09-matplotlib-matplotlib-21898.md new file mode 100644 index 00000000..7db17ac8 --- /dev/null +++ b/docs/_issues/2021-12-09-matplotlib-matplotlib-21898.md @@ -0,0 +1,8 @@ +--- +tags: ["Difficulty-Medium","Good-first-issue","New-feature","data-science","data-visualization","gtk","hacktoberfest","matplotlib","plotting","python","qt","tk","topic-ticks-axis-labels","wx"] +title: "Reprs on formatters and locaters" +html_url: "https://github.com/matplotlib/matplotlib/issues/21898" +user: "story645" +repo: "matplotlib/matplotlib" +--- + diff --git a/docs/_issues/2023-04-02-biaslab-RxInfer.jl-94.md b/docs/_issues/2023-04-02-biaslab-RxInfer.jl-94.md index c0969025..84888fae 100644 --- a/docs/_issues/2023-04-02-biaslab-RxInfer.jl-94.md +++ b/docs/_issues/2023-04-02-biaslab-RxInfer.jl-94.md @@ -1,7 +1,7 @@ --- tags: ["documentation","enhancement"] title: "Suggestions for documentation and features" -html_url: "https://github.com/biaslab/RxInfer.jl/issues/94" +html_url: "https://github.com/ReactiveBayes/RxInfer.jl/issues/94" user: "John-Boik" repo: "biaslab/RxInfer.jl" --- diff --git a/docs/_issues/2023-12-15-firedrakeproject-firedrake-3294.md b/docs/_issues/2023-12-15-firedrakeproject-firedrake-3294.md deleted file mode 100644 index 787c43fa..00000000 --- a/docs/_issues/2023-12-15-firedrakeproject-firedrake-3294.md +++ /dev/null @@ -1,8 +0,0 @@ ---- -tags: ["documentation","straightforward"] -title: "DOCS: Example in documentation does not run, it is missing the variable definition of 1`line`." -html_url: "https://github.com/firedrakeproject/firedrake/issues/3294" -user: "p479h" -repo: "firedrakeproject/firedrake" ---- - diff --git a/docs/_issues/2023-12-17-vprusso-toqito-379.md b/docs/_issues/2023-12-17-vprusso-toqito-379.md deleted file mode 100644 index 8ea65169..00000000 --- a/docs/_issues/2023-12-17-vprusso-toqito-379.md +++ /dev/null @@ -1,8 +0,0 @@ ---- -tags: ["feature-request","matrix-analysis","physics","python","python-3","quantum","quantum-computing","quantum-information","unitaryhack"] -title: "Generate random circulant Gram matrix of specified dimension." -html_url: "https://github.com/vprusso/toqito/issues/379" -user: "vprusso" -repo: "vprusso/toqito" ---- - diff --git a/docs/_issues/2023-12-17-vprusso-toqito-381.md b/docs/_issues/2023-12-17-vprusso-toqito-381.md deleted file mode 100644 index c2459ef3..00000000 --- a/docs/_issues/2023-12-17-vprusso-toqito-381.md +++ /dev/null @@ -1,8 +0,0 @@ ---- -tags: ["feature-request","matrix-analysis","physics","python","python-3","quantum","quantum-computing","quantum-information","unitaryhack"] -title: "Cyclic permutation matrix of dimension \"d\"" -html_url: "https://github.com/vprusso/toqito/issues/381" -user: "vprusso" -repo: "vprusso/toqito" ---- - diff --git a/docs/_issues/2024-01-03-matplotlib-matplotlib-27596.md b/docs/_issues/2024-01-03-matplotlib-matplotlib-27596.md deleted file mode 100644 index 6be0b22e..00000000 --- a/docs/_issues/2024-01-03-matplotlib-matplotlib-27596.md +++ /dev/null @@ -1,8 +0,0 @@ ---- -tags: ["Difficulty-Medium","Good-first-issue","data-science","data-visualization","gtk","hacktoberfest","matplotlib","plotting","python","qt","status-confirmed-bug","tk","wx"] -title: "[Bug]: Markers with numeric name like CARETLEFT cannot be specified using a cycler" -html_url: "https://github.com/matplotlib/matplotlib/issues/27596" -user: "castilma" -repo: "matplotlib/matplotlib" ---- - diff --git a/docs/_issues/2024-01-08-scipy-scipy-19836.md b/docs/_issues/2024-01-08-scipy-scipy-19836.md index b0fc26db..41b8a4f4 100644 --- a/docs/_issues/2024-01-08-scipy-scipy-19836.md +++ b/docs/_issues/2024-01-08-scipy-scipy-19836.md @@ -1,6 +1,6 @@ --- tags: ["Documentation","algorithms","closember","python","scientific-computing","scipy"] -title: "DOC: remove incorrect guidance since SPEC 1" +title: "DOC: remove incorrect sentence about subpackage imports" html_url: "https://github.com/scipy/scipy/issues/19836" user: "lucascolley" repo: "scipy/scipy" diff --git a/docs/_issues/2024-01-09-pandas-dev-pandas-56804.md b/docs/_issues/2024-01-09-pandas-dev-pandas-56804.md new file mode 100644 index 00000000..c8d8c0a4 --- /dev/null +++ b/docs/_issues/2024-01-09-pandas-dev-pandas-56804.md @@ -0,0 +1,8 @@ +--- +tags: ["Docs","alignment","data-analysis","data-science","flexible","pandas","python"] +title: "DOC: fix EX03 errors in docstrings" +html_url: "https://github.com/pandas-dev/pandas/issues/56804" +user: "natmokval" +repo: "pandas-dev/pandas" +--- +