From 4d0191dd216494af9772f5db5c55f956e2a94091 Mon Sep 17 00:00:00 2001 From: SEHI L'YI Date: Thu, 16 May 2024 09:56:24 -0400 Subject: [PATCH] feat: upgrade gosling.js to 0.17.0 (#143) --- package.json | 2 +- yarn.lock | 337 ++++----------------------------------------------- 2 files changed, 22 insertions(+), 317 deletions(-) diff --git a/package.json b/package.json index cb297822..669609bd 100644 --- a/package.json +++ b/package.json @@ -23,7 +23,7 @@ "@types/react-dom": "^17.0.11", "@types/react-router-dom": "^5.2.0", "buffer": "^6.0.3", - "gosling.js": "^0.11.0", + "gosling.js": "^0.17.0", "idb": "^7.0.2", "lodash": "^4.17.21", "path": "^0.12.7", diff --git a/yarn.lock b/yarn.lock index c9bbcfbd..b06b008b 100644 --- a/yarn.lock +++ b/yarn.lock @@ -558,231 +558,11 @@ estree-walker "^2.0.1" picomatch "^2.2.2" -"@types/bezier-js@^4.1.0": - version "4.1.0" - resolved "https://registry.yarnpkg.com/@types/bezier-js/-/bezier-js-4.1.0.tgz#e1b023cc0a6e53492d0249a0711a3e73d1dfc8fe" - integrity sha512-ElU16s8E6Pr6magp8ihwH1O8pbUJASbMND/qgUc9RsLmP3lMLHiDMRXdjtaObwW5GPtOVYOsXDUIhTIluT+yaw== - 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version "3.0.0" - resolved "https://registry.yarnpkg.com/@types/rbush/-/rbush-3.0.0.tgz#b6887d99b159e87ae23cd14eceff34f139842aa6" - integrity sha512-W3ue/GYWXBOpkRm0VSoifrP3HV0Ni47aVJWvXyWMcbtpBy/l/K/smBRiJ+fI8f7shXRjZBiux+iJzYbh7VmcZg== - "@types/react-dom@^17.0.11": version "17.0.11" resolved "https://registry.yarnpkg.com/@types/react-dom/-/react-dom-17.0.11.tgz#e1eadc3c5e86bdb5f7684e00274ae228e7bcc466" @@ -861,11 +626,6 @@ resolved "https://registry.yarnpkg.com/@types/scheduler/-/scheduler-0.16.2.tgz#1a62f89525723dde24ba1b01b092bf5df8ad4d39" integrity sha512-hppQEBDmlwhFAXKJX2KnWLYu5yMfi91yazPb2l+lbJiwW+wdo1gNeRA+3RgNSO39WYX2euey41KEwnqesU2Jew== -"@types/uuid@^8.3.1": - version "8.3.4" - resolved "https://registry.yarnpkg.com/@types/uuid/-/uuid-8.3.4.tgz#bd86a43617df0594787d38b735f55c805becf1bc" - integrity sha512-c/I8ZRb51j+pYGAu5CrFMRxqZ2ke4y2grEBO5AUjgSkSk+qT2Ea+OdWElz/OiMf5MNpn2b17kuVBwZLQJXzihw== - "@typescript-eslint/eslint-plugin@^4.29.2": version "4.29.2" resolved "https://registry.yarnpkg.com/@typescript-eslint/eslint-plugin/-/eslint-plugin-4.29.2.tgz#f54dc0a32b8f61c6024ab8755da05363b733838d" @@ -1459,7 +1219,7 @@ d3-dsv@^2.0.0: resolved "https://registry.yarnpkg.com/d3-format/-/d3-format-2.0.0.tgz#a10bcc0f986c372b729ba447382413aabf5b0767" integrity sha512-Ab3S6XuE/Q+flY96HXT0jOXcM4EAClYFnRGY5zsjRGNy6qCYrQsMffs7cV5Q9xejb35zxW5hf/guKw34kvIKsA== -"d3-format@1 - 3": +"d3-format@1 - 3", d3-format@^3.1.0: version "3.1.0" resolved "https://registry.yarnpkg.com/d3-format/-/d3-format-3.1.0.tgz#9260e23a28ea5cb109e93b21a06e24e2ebd55641" integrity sha512-YyUI6AEuY/Wpt8KWLgZHsIU86atmikuoOmCfommt0LYHiQSPjvX2AcFc38PX0CBpr2RCyZhjex+NS/LPOv6YqA== @@ -1701,11 +1461,6 @@ email-addresses@^3.0.1: resolved "https://registry.yarnpkg.com/email-addresses/-/email-addresses-3.1.0.tgz#cabf7e085cbdb63008a70319a74e6136188812fb" integrity sha512-k0/r7GrWVL32kZlGwfPNgB2Y/mMXVTq/decgLczm/j34whdaspNrZO8CnXPf1laaHxI6ptUlsnAxN+UAPw+fzg== -emitter-component@^1.1.1: - version "1.1.1" - resolved "https://registry.yarnpkg.com/emitter-component/-/emitter-component-1.1.1.tgz#065e2dbed6959bf470679edabeaf7981d1003ab6" - integrity sha512-G+mpdiAySMuB7kesVRLuyvYRqDmshB7ReKEVuyBPkzQlmiDiLrt7hHHIy4Aff552bgknVN7B2/d3lzhGO5dvpQ== - emoji-regex@^8.0.0: version "8.0.0" resolved "https://registry.yarnpkg.com/emoji-regex/-/emoji-regex-8.0.0.tgz#e818fd69ce5ccfcb404594f842963bf53164cc37" @@ -2433,15 +2188,10 @@ gopd@^1.0.1: dependencies: get-intrinsic "^1.1.3" -gosling-theme@^0.0.10: - version "0.0.10" - resolved "https://registry.yarnpkg.com/gosling-theme/-/gosling-theme-0.0.10.tgz#5a4c2d0d24f90fe47c293335cd67832be6cf4d54" - integrity sha512-GRm+XGeSGhKBjM/bNyeUkwp6tjnFKpNbywr58WzzA2qSA4RFPOoitS03R7xpYxqLXBGMFgahkyYd9Mostd2Csw== - -gosling.js@^0.11.0: - version "0.11.0" - resolved "https://registry.yarnpkg.com/gosling.js/-/gosling.js-0.11.0.tgz#a9cca2db816cb03e487c85dfd1f575a1a0c9d5e0" - integrity sha512-i4aZF/mnZtgeyAS3pRFMrId75IpteuAziVqXR3mm4kaKimilIanXNfa2oxARGYynhSYh+CDcIc3ruAWOtYlhCQ== +gosling.js@^0.17.0: + version "0.17.0" + resolved "https://registry.yarnpkg.com/gosling.js/-/gosling.js-0.17.0.tgz#68d9520b78c7a9a97a3db512ad836b9a3abf6cb1" + integrity sha512-AM63ZID/B/A5UUPqj72QBQRGYiuvEt8apOEvv0NPjCT5n8yxy2urNjvLqfGUOiwCMmQNfHuUDTtj0B1bNRPL1A== dependencies: "@gmod/bam" "^1.1.18" "@gmod/bbi" "^3.0.1" @@ -2449,12 +2199,6 @@ gosling.js@^0.11.0: "@gmod/gff" "^1.3.0" "@gmod/tabix" "^1.5.6" "@gmod/vcf" "^5.0.10" - "@types/bezier-js" "^4.1.0" - "@types/d3" "^7.0.0" - "@types/lodash" "^4.14.151" - "@types/node" "^18.6.2" - "@types/rbush" "^3.0.0" - "@types/uuid" "^8.3.1" allotment "^1.19.0" bezier-js "4.0.3" buffer "^6.0.3" @@ -2462,28 +2206,26 @@ gosling.js@^0.11.0: d3-array "^2.5.1" d3-color "^2.0.0" d3-dsv "^2.0.0" + d3-format "^3.1.0" d3-scale "^3.2.1" d3-scale-chromatic "^2.0.0" d3-shape "^2.0.0" events "^3.3.0" fflate "^0.7.1" generic-filehandle "^3.0.1" - gosling-theme "^0.0.10" - higlass "^1.12.4" + higlass "^1.13.4" higlass-register "^0.3.0" higlass-text "^0.1.1" json-stringify-pretty-compact "^2.0.0" jspdf "^2.3.1" lodash-es "^4.17.21" - mixwith "^0.1.1" + monaco-editor "^0.27.0" nanoevents "^7.0.1" pubsub-js "^1.9.3" quick-lru "^6.1.1" rbush "^3.0.1" - react-grid-layout "^1.2.5" stream-browserify "^3.0.0" threads "^1.6.4" - uuid "^8.3.2" graceful-fs@^4.1.6: version "4.2.11" @@ -2556,10 +2298,10 @@ higlass-text@^0.1.1: higlass-register "^0.3.0" slugid "^2.0.0" -higlass@^1.12.4: - version "1.12.4" - resolved "https://registry.yarnpkg.com/higlass/-/higlass-1.12.4.tgz#e494908a2316055ba31f01dfba4205da930eaf33" - integrity sha512-MfjB6RHjTAqWxi5PjoyetnIigdzjcnTBzOdCSaU5ek6G3ewytuXBLD6KIOKUGBRT2D8cfb4Cz/TP6ZzSDBd3kw== +higlass@^1.13.4: + version "1.13.4" + resolved "https://registry.yarnpkg.com/higlass/-/higlass-1.13.4.tgz#3bc837713bce99cc8e8e05fea8a60555e18cec56" + integrity sha512-mIr+Yi5aR0zBAB9iqlqTz/K3ZusrGz8f20g5DHaaRZ/FzMOcFsdL+9ESIPndPZrN2Y/GQ4CHilNjPTTSncIOTg== dependencies: ajv "^6.10.0" box-intersect "^1.0.1" @@ -2589,15 +2331,12 @@ higlass@^1.12.4: pub-sub-es "^2.0.1" react-checkbox-tree "^1.7.3" react-color "^2.13.8" - react-contextmenu "^2.9.2" react-grid-layout "^0.16.6" - react-resizable "^1.8.0" react-simple-code-editor "^0.9.10" react-sortable-hoc "^1.10.1" reactcss "^1.2.3" robust-point-in-polygon "^1.0.3" - slugid "^3.1.0" - stream "0.0.2" + slugid "^3.2.0" url-parse "^1.4.3" vkbeautify "^0.99.3" @@ -3110,10 +2849,10 @@ minimist@^1.2.5: resolved "https://registry.yarnpkg.com/minimist/-/minimist-1.2.5.tgz#67d66014b66a6a8aaa0c083c5fd58df4e4e97602" integrity sha512-FM9nNUYrRBAELZQT3xeZQ7fmMOBg6nWNmJKTcgsJeaLstP/UODVpGsr5OhXhhXg6f+qtJ8uiZ+PUxkDWcgIXLw== -mixwith@^0.1.1: - version "0.1.1" - resolved "https://registry.yarnpkg.com/mixwith/-/mixwith-0.1.1.tgz#c8995918c5b61fbfda9ad377a857cd47750541c0" - integrity sha512-DQsf/liljH/9e+94jR+xfK8vlKceeKdOM9H9UEXLwGuvEEpO6debNtJ9yt1ZKzPKPrwqGxzMdu0BR1fnQb6i4A== +monaco-editor@^0.27.0: + version "0.27.0" + resolved "https://registry.yarnpkg.com/monaco-editor/-/monaco-editor-0.27.0.tgz#4b69108bb1dc1f60174c5dcdf51bc5306ab5ba26" + integrity sha512-UhwP78Wb8w0ZSYoKXQNTV/0CHObp6NS3nCt51QfKE6sKyBo5PBsvuDOHoI2ooBakc6uIwByRLHVeT7+yXQe2fQ== ms@2.1.2: version "2.1.2" @@ -3160,7 +2899,7 @@ node-releases@^1.1.73: resolved "https://registry.yarnpkg.com/node-releases/-/node-releases-1.1.74.tgz#e5866488080ebaa70a93b91144ccde06f3c3463e" integrity sha512-caJBVempXZPepZoZAPCWRTNxYQ+xtG/KAi4ozTA5A+nJ7IU+kLQCbqaUjb5Rwy14M9upBWiQ4NutcmW04LJSRw== -object-assign@^4.0.1, object-assign@^4.1.0, object-assign@^4.1.1: +object-assign@^4.0.1, object-assign@^4.1.1: version "4.1.1" resolved "https://registry.yarnpkg.com/object-assign/-/object-assign-4.1.1.tgz#2109adc7965887cfc05cbbd442cac8bfbb360863" integrity sha512-rJgTQnkUnH1sFw8yT6VSU3zD3sWmu6sZhIseY8VX+GRu3P6F7Fu+JNDoXfklElbLJSnc3FUQHVe4cU5hj+BcUg== @@ -3588,14 +3327,6 @@ react-color@^2.13.8: reactcss "^1.2.0" tinycolor2 "^1.4.1" -react-contextmenu@^2.9.2: - version "2.14.0" - resolved "https://registry.yarnpkg.com/react-contextmenu/-/react-contextmenu-2.14.0.tgz#d8966f30614b9b780b928be4c8d92bd740d55cdd" - integrity sha512-ktqMOuad6sCFNJs/ltEwppN8F0YeXmqoZfwycgtZR/MxOXMYx1xgYC44SzWH259HdGyshk1/7sXGuIRwj9hzbw== - dependencies: - classnames "^2.2.5" - object-assign "^4.1.0" - react-dom@16.13.1: version "16.13.1" resolved "https://registry.yarnpkg.com/react-dom/-/react-dom-16.13.1.tgz#c1bd37331a0486c078ee54c4740720993b2e0e7f" @@ -3614,7 +3345,7 @@ react-draggable@3.x: classnames "^2.2.5" prop-types "^15.6.0" -react-draggable@^4.0.0, react-draggable@^4.0.3: +react-draggable@^4.0.3: version "4.4.5" resolved "https://registry.yarnpkg.com/react-draggable/-/react-draggable-4.4.5.tgz#9e37fe7ce1a4cf843030f521a0a4cc41886d7e7c" integrity sha512-OMHzJdyJbYTZo4uQE393fHcqqPYsEtkjfMgvCHr6rejT+Ezn4OZbNyGH50vv+SunC1RMvwOTSWkEODQLzw1M9g== @@ -3633,17 +3364,6 @@ react-grid-layout@^0.16.6: react-draggable "3.x" react-resizable "1.x" -react-grid-layout@^1.2.5: - version "1.3.4" - resolved "https://registry.yarnpkg.com/react-grid-layout/-/react-grid-layout-1.3.4.tgz#4fa819be24a1ba9268aa11b82d63afc4762a32ff" - integrity sha512-sB3rNhorW77HUdOjB4JkelZTdJGQKuXLl3gNg+BI8gJkTScspL1myfZzW/EM0dLEn+1eH+xW+wNqk0oIM9o7cw== - dependencies: - clsx "^1.1.1" - lodash.isequal "^4.0.0" - prop-types "^15.8.1" - react-draggable "^4.0.0" - react-resizable "^3.0.4" - react-is@^16.13.1, react-is@^16.6.0, react-is@^16.7.0: version "16.13.1" resolved "https://registry.yarnpkg.com/react-is/-/react-is-16.13.1.tgz#789729a4dc36de2999dc156dd6c1d9c18cea56a4" @@ -3654,7 +3374,7 @@ react-refresh@^0.10.0: resolved "https://registry.yarnpkg.com/react-refresh/-/react-refresh-0.10.0.tgz#2f536c9660c0b9b1d500684d9e52a65e7404f7e3" integrity sha512-PgidR3wST3dDYKr6b4pJoqQFpPGNKDSCDx4cZoshjXipw3LzO7mG1My2pwEzz2JVkF+inx3xRpDeQLFQGH/hsQ== -react-resizable@1.x, react-resizable@^1.8.0: +react-resizable@1.x: version "1.11.1" resolved "https://registry.yarnpkg.com/react-resizable/-/react-resizable-1.11.1.tgz#02ca6850afa7a22c1b3e623e64aef71ee252af69" integrity sha512-S70gbLaAYqjuAd49utRHibtHLrHXInh7GuOR+6OO6RO6uleQfuBnWmZjRABfqNEx3C3Z6VPLg0/0uOYFrkfu9Q== @@ -3662,14 +3382,6 @@ react-resizable@1.x, react-resizable@^1.8.0: prop-types "15.x" react-draggable "^4.0.3" -react-resizable@^3.0.4: - version "3.0.5" - resolved "https://registry.yarnpkg.com/react-resizable/-/react-resizable-3.0.5.tgz#362721f2efbd094976f1780ae13f1ad7739786c1" - integrity sha512-vKpeHhI5OZvYn82kXOs1bC8aOXktGU5AmKAgaZS4F5JPburCtbmDPqE7Pzp+1kN4+Wb81LlF33VpGwWwtXem+w== - dependencies: - prop-types "15.x" - react-draggable "^4.0.3" - react-router-dom@^5.2.0: version "5.3.3" resolved "https://registry.yarnpkg.com/react-router-dom/-/react-router-dom-5.3.3.tgz#8779fc28e6691d07afcaf98406d3812fe6f11199" @@ -3969,7 +3681,7 @@ slice-ansi@^4.0.0: astral-regex "^2.0.0" is-fullwidth-code-point "^3.0.0" -slugid@^2.0.0, slugid@^3.0.0, slugid@^3.1.0: +slugid@^2.0.0, slugid@^3.0.0, slugid@^3.2.0: version "3.0.0" resolved "https://registry.yarnpkg.com/slugid/-/slugid-3.0.0.tgz#57cb692641a20feb4a1d774b2ad11594c9aa6125" integrity sha512-MIir9SJS6BQFjFg8DHGMgPkDg21huT0+kYHiS6NkkWZXHSEdgIECo3nUVEG3GDkmecBTy+zRs6pCvPhpk4bKcg== @@ -4004,13 +3716,6 @@ stream-browserify@^3.0.0: inherits "~2.0.4" readable-stream "^3.5.0" -stream@0.0.2: - version "0.0.2" - resolved "https://registry.yarnpkg.com/stream/-/stream-0.0.2.tgz#7f5363f057f6592c5595f00bc80a27f5cec1f0ef" - integrity sha512-gCq3NDI2P35B2n6t76YJuOp7d6cN/C7Rt0577l91wllh0sY9ZBuw9KaSGqH/b0hzn3CWWJbpbW0W0WvQ1H/Q7g== - dependencies: - emitter-component "^1.1.1" - string-width@^4.2.0: version "4.2.2" resolved "https://registry.yarnpkg.com/string-width/-/string-width-4.2.2.tgz#dafd4f9559a7585cfba529c6a0a4f73488ebd4c5"