pyboolnet is a Python package for the generation, modification and analysis of Boolean networks. The accompanying paper was published with Bioinformatics and is available at
For report bugs, request features and give feedback at issues or contact
- [email protected] (developer)
- [email protected]
The documentation and tutorials are hosted here:
For examples of attractors, basins and phenotypes, browse the model repository here:
To install the pyboolnet master branch use:
pip3 install pip --upgrade
pip3 install --force-reinstall git+https://github.com/hklarner/pyboolnet
To install a tagged version use the @:
pip3 install pip --upgrade
pip3 install git+https://github.com/hklarner/[email protected]
For release notes, see
clasp and gringo need to be on installed:
apt install clasp
apt install gringo
$ pyboolnet -h
$ pyboolnet --trap-spaces --type min grieco_mapk.bnet
- send pull requests to the
developbranch - add tests to
pyboolnet/tests/