Ninja can't track changes in generated files properly

[Hsilgos]

When lime files are changed it trigger custom step to regenerate code. It triggers to recompile *_glue.cpp because they are specified as OUTPUT of custom command which runs runGenerate.cmake. But no generated headers are specified as OUTPUT (because mainly it's unknown at configuration time which headers will be generated). So ninja doesn't recompile code which includes those headers (at this run right after lime file is changed). It's necessary to trigger build again to recompile rest of code.

May be one of possible solutions is to specify common headers which are included in other generated headers as OUTPUT?