Can't locate Unix/Processors.pm in @INC

[karoraw1]

I will try to include as much info as possible here.

I installed muscle and usearch manually beforehand and tried the ./install.tcsh skip skip option for installation. The installation process failed many times because one or another of the modules would not install. The script tried to force installation but this did not succeed in some instances. I used the following procedure to manually install IO-Pipe-Producer-2.01.tar.gz, Sys-MemInfo-0.98.tar.gz, Math-Random-0.72.tar.gz, and Unix-Processors-2.044.tar.gz :

$ wget http://search.cpan.org/CPAN/authors/id/W/WS/WSNYDER/Unix-Processors-2.044.tar.gz
$ tar xvzf Unix-Processors-2.044.tar.gz
$ cd Unix-Processors-2.044/
$ perl Makefile.PL INSTALL_BASE=/home-3/[email protected] #My $HOME directory
$ make test
    All tests successful.
    Files=3, Tests=11,  0 wallclock secs ( 0.05 usr  0.01 sys +  0.11 cusr  0.08 csys =  0.25 CPU)
    Result: PASS
$ make install
    Running Mkbootstrap for Unix::Processors ()
    chmod 644 "Processors.bs"
    Manifying 2 pod documents
    Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
    Installing /home-3/[email protected]/lib/perl5/x86_64-linux/auto/Unix/Processors/Processors.so
    Installing /home-3/[email protected]/lib/perl5/x86_64-linux/Unix/Processors.pm
    Installing /home-3/[email protected]/lib/perl5/x86_64-linux/Unix/Processors/Info.pm
    Installing /home-3/[email protected]/man/man3/Unix::Processors.3
    Installing /home-3/[email protected]/man/man3/Unix::Processors::Info.3
    Appending installation info to /home-3/[email protected]/lib/perl5/x86_64-linux/perllocal.pod

This allowed installation of CFF to complete, however the test scripts failed. I commented out the sections of run_CFF_on_Fast*.tcsh that were breaking down on the results of the getconf ARG_MAX command. I still couldn't run the example scripts because of an error thrown by the filterIndels.pl command:

Can't locate Unix/Processors.pm in @INC (you may need to install the Unix::Processors module) (@INC contains: /home-3/[email protected]/perl5/lib/perl5/5.22.0/x86_64-linux /home-3/[email protected]/perl5/lib/perl5/5.22.0 /home-3/[email protected]/perl5/lib/perl5/x86_64-linux /home-3/[email protected]/perl5/lib/perl5 /cm/shared/apps/perl/5.22.0/lib/site_perl/5.22.0/x86_64-linux /cm/shared/apps/perl/5.22.0/lib/site_perl/5.22.0 /cm/shared/apps/perl/5.22.0/lib/5.22.0/x86_64-linux /cm/shared/apps/perl/5.22.0/lib/5.22.0 .).
BEGIN failed--compilation aborted.

I finally got everything to work after I re-installed Unix::Processors using the simpler method:

$ perl -MCPAN -e shell
$ cpan[1]> install Unix::Processors

After this second installation, the ./install.tcsh skip skip command ran through to the end and everything seems to be in order now 👍

This might be an issue that I brought upon myself somehow. I am not familiar with perl at all. I just figured I should let someone know about my struggles.

[hepcat72]

Thanks for the report. I'm sure this info may be useful to others out there who encounter similar difficulties. Sorry for the late response.