README.md

SC3 paper figures

This repository contains scripts for recreation of the figures from the SC3 paper.

Required R libraries

cowplot
dplyr
googleVis
pheatmap

Fig. 1

data_c
script
pdf

data_d
script
pdf

Fig. 2

data_a
data_c
data_d
script
pdf

Fig. 3

data
script
pdf

Fig. S1

data
script

Fig. S2

data
script

Fig. S3

data_a
data_b
data_c
data_d
script

Fig. S4

data_a
data_b
data_c
data_d
data_e
script

Fig. S5

data_a
script_a
pdf_a

data_b
html_b
script_b
pdf_b

Fig. S6

data_b
data_c
script
pdf

Fig. S7

data_a1
data_a2
data_b1
data_b2
script

Fig. S12

data_a
script
pdf

Session Info

R Under development (unstable) (2016-10-20 r71540)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X Yosemite 10.10.5

locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] pheatmap_1.0.8  googleVis_0.6.1 dplyr_0.5.0     cowplot_0.7.0   ggplot2_2.2.1  

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.8        codetools_0.2-15   assertthat_0.1     grid_3.4.0         plyr_1.8.4        
 [6] R6_2.2.0           jsonlite_1.1       gtable_0.2.0       DBI_0.5-1          magrittr_1.5      
[11] scales_0.4.1       lazyeval_0.2.0     RColorBrewer_1.1-2 tools_3.4.0        munsell_0.4.3     
[16] colorspace_1.3-1   tibble_1.2