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iRODS container handles authentication and connection to iRODS server, and mounting an iRODS directory as a unix filesystem.
Launching workflow which ingests files from iRODS must include step to start iRODS container and mount it as a filesystem into the workflow container. It should be straightforward to expose the authenticated iRODS mount in the iRODS container on an isolated docker network, and then mount it as a volume in the workflow containers.
Need to explore network filesystem protocols, WebDAV/Davrods would be ideal for this use case but its openid authentication is not yet finished. Temporarily could use ftp or nfs.
The text was updated successfully, but these errors were encountered:
This is now pretty much solved by enabling Docker-in-Docker functionality in the base image. If this becomes a problem or lacks docker features required by a particular workflow, may explore other possibilities.
iRODS container handles authentication and connection to iRODS server, and mounting an iRODS directory as a unix filesystem.
Launching workflow which ingests files from iRODS must include step to start iRODS container and mount it as a filesystem into the workflow container. It should be straightforward to expose the authenticated iRODS mount in the iRODS container on an isolated docker network, and then mount it as a volume in the workflow containers.
Need to explore network filesystem protocols, WebDAV/Davrods would be ideal for this use case but its openid authentication is not yet finished. Temporarily could use ftp or nfs.
The text was updated successfully, but these errors were encountered: